RNA–Protein interactions for RNA: ENST00000559496.5

ZEB1-216, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-216ENST00000559496 AEBP2Q6ZN18 517 aaPredicted RBP29.53■■■□□ 2.32
ZEB1-216ENST00000559496 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
ZEB1-216ENST00000559496 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
ZEB1-216ENST00000559496 PHF23Q9BUL5 403 aaPredicted RBP24.88■■□□□ 1.57
ZEB1-216ENST00000559496 FOXD1Q16676 465 aa23.38■■□□□ 1.33
ZEB1-216ENST00000559496 PLPPR3Q6T4P5 718 aa22.76■■□□□ 1.23
ZEB1-216ENST00000559496 PPP6R1Q9UPN7 881 aa22.1■■□□□ 1.13
ZEB1-216ENST00000559496 ADRA2BP18089 450 aa22.01■■□□□ 1.11
ZEB1-216ENST00000559496 PIAS4Q8N2W9 510 aaPredicted RBP21.88■■□□□ 1.09
ZEB1-216ENST00000559496 MSH5O43196 834 aa21.76■■□□□ 1.07
ZEB1-216ENST00000559496 POTEDQ86YR6 584 aa20.72■□□□□ 0.91
ZEB1-216ENST00000559496 MAPK8IP2Q13387 824 aaPredicted RBP20.13■□□□□ 0.81
ZEB1-216ENST00000559496 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
ZEB1-216ENST00000559496 PPP4R3CPQ6ZMV5 832 aa19.99■□□□□ 0.79
ZEB1-216ENST00000559496 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
ZEB1-216ENST00000559496 CNKSR2Q8WXI2 1034 aa19.55■□□□□ 0.72
ZEB1-216ENST00000559496 HOXD11P31277 338 aaPredicted RBP19.4■□□□□ 0.7
ZEB1-216ENST00000559496 RNF216Q9NWF9 866 aaPredicted RBP19.32■□□□□ 0.68
ZEB1-216ENST00000559496 NCBP3Q53F19 620 aaKnown RBP19.29■□□□□ 0.68
ZEB1-216ENST00000559496 NPM3O75607 178 aaKnown RBP19.05■□□□□ 0.64
ZEB1-216ENST00000559496 DCAF8L1A6NGE4 600 aa19.03■□□□□ 0.64
ZEB1-216ENST00000559496 KCNA4P22459 653 aa18.94■□□□□ 0.62
ZEB1-216ENST00000559496 DNAJC5BQ9UF47 199 aa18.71■□□□□ 0.59
ZEB1-216ENST00000559496 RNF39Q9H2S5 420 aa18.61■□□□□ 0.57
ZEB1-216ENST00000559496 CACNB1Q02641 598 aaPredicted RBP18.42■□□□□ 0.54
ZEB1-216ENST00000559496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.39■□□□□ 0.53
ZEB1-216ENST00000559496 C1QBPQ07021 282 aaKnown RBP18.35■□□□□ 0.53
ZEB1-216ENST00000559496 SLC4A2P04920 1241 aa18.13■□□□□ 0.49
ZEB1-216ENST00000559496 U3KPZ7 1027 aaPredicted RBP18.1■□□□□ 0.49
ZEB1-216ENST00000559496 SLC4A1APQ9BWU0 796 aaKnown RBP17.95■□□□□ 0.46
ZEB1-216ENST00000559496 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
ZEB1-216ENST00000559496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.66■□□□□ 0.42
ZEB1-216ENST00000559496 HNRNPUL2Q1KMD3 747 aaKnown RBP17.66■□□□□ 0.42
ZEB1-216ENST00000559496 CAPN15O75808 1086 aa17.63■□□□□ 0.41
ZEB1-216ENST00000559496 MYCNP04198 464 aaPredicted RBP17.61■□□□□ 0.41
ZEB1-216ENST00000559496 APLP2Q06481 763 aa17.59■□□□□ 0.41
ZEB1-216ENST00000559496 FOXD4L1Q9NU39 408 aa17.59■□□□□ 0.41
ZEB1-216ENST00000559496 SAMD1Q6SPF0 538 aaPredicted RBP17.58■□□□□ 0.4
ZEB1-216ENST00000559496 DSG3P32926 999 aa17.53■□□□□ 0.4
ZEB1-216ENST00000559496 ZBTB22O15209 634 aa17.45■□□□□ 0.38
ZEB1-216ENST00000559496 ZNF219Q9P2Y4 722 aaPredicted RBP17.45■□□□□ 0.38
ZEB1-216ENST00000559496 TRHP20396 242 aaPredicted RBP17.41■□□□□ 0.38
ZEB1-216ENST00000559496 ABCB7O75027 752 aa17.25■□□□□ 0.35
ZEB1-216ENST00000559496 ATF5Q9Y2D1 282 aaPredicted RBP17.17■□□□□ 0.34
ZEB1-216ENST00000559496 ATXN8OSP0DMR3 200 aa17.04■□□□□ 0.32
ZEB1-216ENST00000559496 POLA2Q14181 598 aa17.04■□□□□ 0.32
ZEB1-216ENST00000559496 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
ZEB1-216ENST00000559496 EHMT2Q96KQ7 1210 aa16.95■□□□□ 0.3
ZEB1-216ENST00000559496 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
ZEB1-216ENST00000559496 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
ZEB1-216ENST00000559496 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
ZEB1-216ENST00000559496 FBLN2P98095 1184 aa16.44■□□□□ 0.22
ZEB1-216ENST00000559496 MKRN4PQ13434 485 aaPredicted RBP16.42■□□□□ 0.22
ZEB1-216ENST00000559496 AKT1S1Q96B36 256 aa16.38■□□□□ 0.21
ZEB1-216ENST00000559496 POTEHQ6S545 545 aa16.28■□□□□ 0.2
ZEB1-216ENST00000559496 SPDYE2BA6NHP3 402 aa16.27■□□□□ 0.2
ZEB1-216ENST00000559496 SPDYE6P0CI01 402 aa16.27■□□□□ 0.2
ZEB1-216ENST00000559496 SPDYE2Q495Y8 402 aa16.27■□□□□ 0.2
ZEB1-216ENST00000559496 REM2Q8IYK8 340 aaPredicted RBP16.22■□□□□ 0.19
ZEB1-216ENST00000559496 CHRDL2Q6WN34 429 aa16.2■□□□□ 0.18
ZEB1-216ENST00000559496 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
ZEB1-216ENST00000559496 ZNF692Q9BU19 519 aaPredicted RBP16.08■□□□□ 0.16
ZEB1-216ENST00000559496 PITPNM1O00562 1244 aa16.04■□□□□ 0.16
ZEB1-216ENST00000559496 PIP4P2Q8N4L2 257 aa15.89■□□□□ 0.13
ZEB1-216ENST00000559496 SPDYE1Q8NFV5 336 aaPredicted RBP15.88■□□□□ 0.13
ZEB1-216ENST00000559496 FXR2P51116 673 aaKnown RBP eCLIP15.87■□□□□ 0.13
ZEB1-216ENST00000559496 PABPN1Q86U42 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
ZEB1-216ENST00000559496 CLEC11AQ9Y240 323 aa15.79■□□□□ 0.12
ZEB1-216ENST00000559496 SPDYE4A6NLX3 237 aa15.75■□□□□ 0.11
ZEB1-216ENST00000559496 NISCHQ9Y2I1 1504 aa15.68■□□□□ 0.1
ZEB1-216ENST00000559496 PRKAR2AP13861 404 aaKnown RBP15.62■□□□□ 0.09
ZEB1-216ENST00000559496 PRR29P0C7W0 189 aa15.61■□□□□ 0.09
ZEB1-216ENST00000559496 PROM2Q8N271 834 aa15.52■□□□□ 0.08
ZEB1-216ENST00000559496 STAG3Q9UJ98 1225 aa15.51■□□□□ 0.07
ZEB1-216ENST00000559496 CHADLQ6NUI6 762 aa15.49■□□□□ 0.07
ZEB1-216ENST00000559496 HAX1O00165 279 aa15.46■□□□□ 0.07
ZEB1-216ENST00000559496 SP7Q8TDD2 431 aaPredicted RBP15.41■□□□□ 0.06
ZEB1-216ENST00000559496 FKBP8Q14318 412 aa15.36■□□□□ 0.05
ZEB1-216ENST00000559496 C19orf67A6NJJ6 358 aa15.36■□□□□ 0.05
ZEB1-216ENST00000559496 EVX2Q03828 476 aa15.35■□□□□ 0.05
ZEB1-216ENST00000559496 CREBZFQ9NS37 354 aa15.35■□□□□ 0.05
ZEB1-216ENST00000559496 FARP1Q9Y4F1 1045 aaPredicted RBP15.32■□□□□ 0.04
ZEB1-216ENST00000559496 MNX1P50219 401 aaPredicted RBP15.15■□□□□ 0.02
ZEB1-216ENST00000559496 CD44P16070 742 aaKnown RBP15.13■□□□□ 0.01
ZEB1-216ENST00000559496 GABBR2O75899 941 aa15.02■□□□□ -0
ZEB1-216ENST00000559496 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
ZEB1-216ENST00000559496 MIER1Q8N108 512 aa14.99□□□□□ -0.01
ZEB1-216ENST00000559496 FBXO3Q9UK99 471 aa14.98□□□□□ -0.01
ZEB1-216ENST00000559496 PLEKHG5O94827 1062 aa14.97□□□□□ -0.01
ZEB1-216ENST00000559496 ZNF579Q8NAF0 562 aaKnown RBP14.97□□□□□ -0.01
ZEB1-216ENST00000559496 ZRANB1Q9UGI0 708 aa14.96□□□□□ -0.02
ZEB1-216ENST00000559496 CLCN6P51797 869 aa14.92□□□□□ -0.02
ZEB1-216ENST00000559496 PLCD3Q8N3E9 789 aa14.9□□□□□ -0.02
ZEB1-216ENST00000559496 PAK3O75914 559 aaPredicted RBP14.88□□□□□ -0.03
ZEB1-216ENST00000559496 ZBTB47Q9UFB7 747 aaPredicted RBP14.8□□□□□ -0.04
ZEB1-216ENST00000559496 PHF12Q96QT6 1004 aa14.78□□□□□ -0.04
ZEB1-216ENST00000559496 VASPP50552 380 aaPredicted RBP14.74□□□□□ -0.05
ZEB1-216ENST00000559496 RASEFQ8IZ41 740 aa14.74□□□□□ -0.05
ZEB1-216ENST00000559496 TSPYL2Q9H2G4 693 aaPredicted RBP14.74□□□□□ -0.05
ZEB1-216ENST00000559496 GALR2O43603 387 aaPredicted RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms