RNA–Protein interactions for RNA: ENST00000558917.1

AC090888.3-201, humanhuman

BASIC

Gene AC090888.3, Length 509 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC090888.3-201ENST00000558917 AEBP2Q6ZN18 517 aaPredicted RBP28.12■■■□□ 2.09
AC090888.3-201ENST00000558917 CHIC1Q5VXU3 224 aa26.66■■□□□ 1.86
AC090888.3-201ENST00000558917 SENP3Q9H4L4 574 aaPredicted RBP24.02■■□□□ 1.44
AC090888.3-201ENST00000558917 PHF23Q9BUL5 403 aaPredicted RBP23.72■■□□□ 1.39
AC090888.3-201ENST00000558917 FOXD1Q16676 465 aa22.39■■□□□ 1.17
AC090888.3-201ENST00000558917 PLPPR3Q6T4P5 718 aa21.3■■□□□ 1
AC090888.3-201ENST00000558917 MSH5O43196 834 aa20.97■□□□□ 0.95
AC090888.3-201ENST00000558917 PIAS4Q8N2W9 510 aaPredicted RBP20.95■□□□□ 0.94
AC090888.3-201ENST00000558917 PPP6R1Q9UPN7 881 aa20.9■□□□□ 0.94
AC090888.3-201ENST00000558917 ADRA2BP18089 450 aa20.87■□□□□ 0.93
AC090888.3-201ENST00000558917 POTEDQ86YR6 584 aa20.57■□□□□ 0.88
AC090888.3-201ENST00000558917 MAPK8IP2Q13387 824 aaPredicted RBP19.18■□□□□ 0.66
AC090888.3-201ENST00000558917 SCAF1Q9H7N4 1312 aaKnown RBP19.09■□□□□ 0.65
AC090888.3-201ENST00000558917 DMRT2Q9Y5R5 561 aa19.02■□□□□ 0.64
AC090888.3-201ENST00000558917 PPP4R3CPQ6ZMV5 832 aa18.67■□□□□ 0.58
AC090888.3-201ENST00000558917 DCAF8L1A6NGE4 600 aa18.36■□□□□ 0.53
AC090888.3-201ENST00000558917 CNKSR2Q8WXI2 1034 aa18.32■□□□□ 0.52
AC090888.3-201ENST00000558917 HOXD11P31277 338 aaPredicted RBP18.28■□□□□ 0.52
AC090888.3-201ENST00000558917 RNF216Q9NWF9 866 aaPredicted RBP18.15■□□□□ 0.5
AC090888.3-201ENST00000558917 CACNB1Q02641 598 aaPredicted RBP18.09■□□□□ 0.49
AC090888.3-201ENST00000558917 NCBP3Q53F19 620 aaKnown RBP17.96■□□□□ 0.47
AC090888.3-201ENST00000558917 RNF39Q9H2S5 420 aa17.88■□□□□ 0.45
AC090888.3-201ENST00000558917 NPM3O75607 178 aaKnown RBP17.67■□□□□ 0.42
AC090888.3-201ENST00000558917 C1QBPQ07021 282 aaKnown RBP17.63■□□□□ 0.41
AC090888.3-201ENST00000558917 DNAJC5BQ9UF47 199 aa17.62■□□□□ 0.41
AC090888.3-201ENST00000558917 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.51■□□□□ 0.39
AC090888.3-201ENST00000558917 KCNA4P22459 653 aa17.3■□□□□ 0.36
AC090888.3-201ENST00000558917 U3KPZ7 1027 aaPredicted RBP17.08■□□□□ 0.32
AC090888.3-201ENST00000558917 NISCHQ9Y2I1 1504 aa17.04■□□□□ 0.32
AC090888.3-201ENST00000558917 CAPN15O75808 1086 aa16.89■□□□□ 0.29
AC090888.3-201ENST00000558917 SPINK5Q9NQ38 1064 aaPredicted RBP16.88■□□□□ 0.29
AC090888.3-201ENST00000558917 SLC4A2P04920 1241 aa16.87■□□□□ 0.29
AC090888.3-201ENST00000558917 DSG3P32926 999 aa16.74■□□□□ 0.27
AC090888.3-201ENST00000558917 APLP2Q06481 763 aa16.63■□□□□ 0.25
AC090888.3-201ENST00000558917 TRHP20396 242 aaPredicted RBP16.61■□□□□ 0.25
AC090888.3-201ENST00000558917 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.59■□□□□ 0.25
AC090888.3-201ENST00000558917 HNRNPUL2Q1KMD3 747 aaKnown RBP16.59■□□□□ 0.25
AC090888.3-201ENST00000558917 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
AC090888.3-201ENST00000558917 ABCC9O60706 1549 aa16.53■□□□□ 0.24
AC090888.3-201ENST00000558917 ABCB7O75027 752 aa16.49■□□□□ 0.23
AC090888.3-201ENST00000558917 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
AC090888.3-201ENST00000558917 MYCNP04198 464 aaPredicted RBP16.35■□□□□ 0.21
AC090888.3-201ENST00000558917 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
AC090888.3-201ENST00000558917 FOXD4L1Q9NU39 408 aa16.14■□□□□ 0.17
AC090888.3-201ENST00000558917 POTEHQ6S545 545 aa16.13■□□□□ 0.17
AC090888.3-201ENST00000558917 POLA2Q14181 598 aa16.12■□□□□ 0.17
AC090888.3-201ENST00000558917 RBM42Q9BTD8 480 aaKnown RBP15.99■□□□□ 0.15
AC090888.3-201ENST00000558917 ATF5Q9Y2D1 282 aaPredicted RBP15.98■□□□□ 0.15
AC090888.3-201ENST00000558917 ZBTB22O15209 634 aa15.87■□□□□ 0.13
AC090888.3-201ENST00000558917 ZBTB12Q9Y330 459 aaPredicted RBP15.77■□□□□ 0.12
AC090888.3-201ENST00000558917 CHRDL2Q6WN34 429 aa15.67■□□□□ 0.1
AC090888.3-201ENST00000558917 ATXN8OSP0DMR3 200 aa15.63■□□□□ 0.09
AC090888.3-201ENST00000558917 OSCARQ8IYS5 282 aa15.6■□□□□ 0.09
AC090888.3-201ENST00000558917 AKT1S1Q96B36 256 aa15.6■□□□□ 0.09
AC090888.3-201ENST00000558917 CCDC180Q9P1Z9 1646 aa15.58■□□□□ 0.09
AC090888.3-201ENST00000558917 DNAJC5Q9H3Z4 198 aa15.57■□□□□ 0.08
AC090888.3-201ENST00000558917 REM2Q8IYK8 340 aaPredicted RBP15.47■□□□□ 0.07
AC090888.3-201ENST00000558917 FBLN2P98095 1184 aa15.39■□□□□ 0.05
AC090888.3-201ENST00000558917 PITPNM1O00562 1244 aa15.3■□□□□ 0.04
AC090888.3-201ENST00000558917 SPDYE2BA6NHP3 402 aa15.28■□□□□ 0.04
AC090888.3-201ENST00000558917 SPDYE6P0CI01 402 aa15.28■□□□□ 0.04
AC090888.3-201ENST00000558917 SPDYE2Q495Y8 402 aa15.28■□□□□ 0.04
AC090888.3-201ENST00000558917 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
AC090888.3-201ENST00000558917 PIP4P2Q8N4L2 257 aa15.28■□□□□ 0.04
AC090888.3-201ENST00000558917 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
AC090888.3-201ENST00000558917 MKRN4PQ13434 485 aaPredicted RBP15.22■□□□□ 0.03
AC090888.3-201ENST00000558917 FXR2P51116 673 aaKnown RBP eCLIP15.15■□□□□ 0.02
AC090888.3-201ENST00000558917 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
AC090888.3-201ENST00000558917 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
AC090888.3-201ENST00000558917 SP7Q8TDD2 431 aaPredicted RBP15.09■□□□□ 0.01
AC090888.3-201ENST00000558917 CLEC11AQ9Y240 323 aa15.08■□□□□ 0
AC090888.3-201ENST00000558917 HAX1O00165 279 aa15.07■□□□□ 0
AC090888.3-201ENST00000558917 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
AC090888.3-201ENST00000558917 SSUH2Q9Y2M2 353 aa15.03■□□□□ -0
AC090888.3-201ENST00000558917 UNC13AQ9UPW8 1703 aa15□□□□□ -0.01
AC090888.3-201ENST00000558917 BICRAQ9NZM4 1560 aa15□□□□□ -0.01
AC090888.3-201ENST00000558917 EHMT2Q96KQ7 1210 aa14.96□□□□□ -0.01
AC090888.3-201ENST00000558917 CECR2Q9BXF3 1484 aa14.95□□□□□ -0.02
AC090888.3-201ENST00000558917 NACADO15069 1562 aa14.94□□□□□ -0.02
AC090888.3-201ENST00000558917 PRKAR2AP13861 404 aaKnown RBP14.93□□□□□ -0.02
AC090888.3-201ENST00000558917 CC2D2AQ9P2K1 1620 aa14.87□□□□□ -0.03
AC090888.3-201ENST00000558917 EVX2Q03828 476 aa14.82□□□□□ -0.04
AC090888.3-201ENST00000558917 PRR29P0C7W0 189 aa14.79□□□□□ -0.04
AC090888.3-201ENST00000558917 CHADLQ6NUI6 762 aa14.77□□□□□ -0.05
AC090888.3-201ENST00000558917 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
AC090888.3-201ENST00000558917 C19orf67A6NJJ6 358 aa14.67□□□□□ -0.06
AC090888.3-201ENST00000558917 EIF4G1Q04637 1599 aaKnown RBP14.61□□□□□ -0.07
AC090888.3-201ENST00000558917 CUX2O14529 1486 aa14.51□□□□□ -0.09
AC090888.3-201ENST00000558917 SPDYE4A6NLX3 237 aa14.51□□□□□ -0.09
AC090888.3-201ENST00000558917 FARP1Q9Y4F1 1045 aaPredicted RBP14.51□□□□□ -0.09
AC090888.3-201ENST00000558917 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
AC090888.3-201ENST00000558917 GABBR2O75899 941 aa14.5□□□□□ -0.09
AC090888.3-201ENST00000558917 TRIM41Q8WV44 630 aa14.49□□□□□ -0.09
AC090888.3-201ENST00000558917 STAG3Q9UJ98 1225 aa14.46□□□□□ -0.09
AC090888.3-201ENST00000558917 MYO15BQ96JP2 1530 aa14.46□□□□□ -0.1
AC090888.3-201ENST00000558917 CD44P16070 742 aaKnown RBP14.45□□□□□ -0.1
AC090888.3-201ENST00000558917 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
AC090888.3-201ENST00000558917 ZRANB1Q9UGI0 708 aa14.25□□□□□ -0.13
AC090888.3-201ENST00000558917 CLCN6P51797 869 aa14.22□□□□□ -0.13
AC090888.3-201ENST00000558917 ERCC6Q03468 1493 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms