RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 NISCHQ9Y2I1 1504 aa22.79■■□□□ 1.24
SRP54-213ENST00000556994 SHROOM4Q9ULL8 1493 aa19.9■□□□□ 0.78
SRP54-213ENST00000556994 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
SRP54-213ENST00000556994 ZCCHC6Q5VYS8 1495 aaKnown RBP19.3■□□□□ 0.68
SRP54-213ENST00000556994 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
SRP54-213ENST00000556994 DCAF8L2P0C7V8 631 aa19.14■□□□□ 0.65
SRP54-213ENST00000556994 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
SRP54-213ENST00000556994 CHIC1Q5VXU3 224 aa19.12■□□□□ 0.65
SRP54-213ENST00000556994 HRCP23327 699 aa18.96■□□□□ 0.63
SRP54-213ENST00000556994 PCGF6Q9BYE7 350 aa18.89■□□□□ 0.61
SRP54-213ENST00000556994 PPARGC1BQ86YN6 1023 aaKnown RBP18.69■□□□□ 0.58
SRP54-213ENST00000556994 LOC105371045A0A1W2PR82 267 aa18.68■□□□□ 0.58
SRP54-213ENST00000556994 DCAF1Q9Y4B6 1507 aa18.56■□□□□ 0.56
SRP54-213ENST00000556994 TRIM26Q12899 539 aaPredicted RBP18.35■□□□□ 0.53
SRP54-213ENST00000556994 ABCC9O60706 1549 aa18.25■□□□□ 0.51
SRP54-213ENST00000556994 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
SRP54-213ENST00000556994 SCRIBQ14160 1630 aa18.18■□□□□ 0.5
SRP54-213ENST00000556994 FAM9AQ8IZU1 332 aaPredicted RBP18.18■□□□□ 0.5
SRP54-213ENST00000556994 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
SRP54-213ENST00000556994 EHMT2Q96KQ7 1210 aa18.12■□□□□ 0.49
SRP54-213ENST00000556994 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
SRP54-213ENST00000556994 ZEB1P37275 1124 aaPredicted RBP17.99■□□□□ 0.47
SRP54-213ENST00000556994 CECR2Q9BXF3 1484 aa17.88■□□□□ 0.45
SRP54-213ENST00000556994 NACADO15069 1562 aa17.82■□□□□ 0.44
SRP54-213ENST00000556994 MROH2BQ7Z745 1585 aa17.8■□□□□ 0.44
SRP54-213ENST00000556994 WIZO95785 1651 aa17.73■□□□□ 0.43
SRP54-213ENST00000556994 SCAF1Q9H7N4 1312 aaKnown RBP17.7■□□□□ 0.42
SRP54-213ENST00000556994 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.69■□□□□ 0.42
SRP54-213ENST00000556994 CCER1Q8TC90 406 aaPredicted RBP17.6■□□□□ 0.41
SRP54-213ENST00000556994 TTBK1Q5TCY1 1321 aaPredicted RBP17.58■□□□□ 0.41
SRP54-213ENST00000556994 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
SRP54-213ENST00000556994 EIF4G1Q04637 1599 aaKnown RBP17.49■□□□□ 0.39
SRP54-213ENST00000556994 ABCC8Q09428 1581 aa17.48■□□□□ 0.39
SRP54-213ENST00000556994 PELP1Q8IZL8 1130 aaKnown RBP17.47■□□□□ 0.39
SRP54-213ENST00000556994 CCDC88BA6NC98 1476 aa17.45■□□□□ 0.38
SRP54-213ENST00000556994 NEUROD1Q13562 356 aa17.41■□□□□ 0.38
SRP54-213ENST00000556994 ACIN1Q9UKV3 1341 aaKnown RBP17.4■□□□□ 0.38
SRP54-213ENST00000556994 DIEXFQ68CQ4 756 aaKnown RBP17.39■□□□□ 0.37
SRP54-213ENST00000556994 SOGA1O94964 1423 aa17.37■□□□□ 0.37
SRP54-213ENST00000556994 CEP162Q5TB80 1403 aa17.37■□□□□ 0.37
SRP54-213ENST00000556994 TOP2AP11388 1531 aaKnown RBP17.35■□□□□ 0.37
SRP54-213ENST00000556994 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
SRP54-213ENST00000556994 UBTFP17480 764 aaKnown RBP17.31■□□□□ 0.36
SRP54-213ENST00000556994 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
SRP54-213ENST00000556994 RUSC2Q8N2Y8 1516 aa17.29■□□□□ 0.36
SRP54-213ENST00000556994 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
SRP54-213ENST00000556994 CSRNP3Q8WYN3 585 aa17.28■□□□□ 0.36
SRP54-213ENST00000556994 TNIKQ9UKE5 1360 aa17.28■□□□□ 0.36
SRP54-213ENST00000556994 GTF3C3Q9Y5Q9 886 aa17.26■□□□□ 0.35
SRP54-213ENST00000556994 UNC13AQ9UPW8 1703 aa17.26■□□□□ 0.35
SRP54-213ENST00000556994 CENPBP07199 599 aaPredicted RBP17.22■□□□□ 0.35
SRP54-213ENST00000556994 ZNF316A6NFI3 1004 aaPredicted RBP17.16■□□□□ 0.34
SRP54-213ENST00000556994 EEA1Q15075 1411 aa17.14■□□□□ 0.33
SRP54-213ENST00000556994 HNRNPUL2Q1KMD3 747 aaKnown RBP17.14■□□□□ 0.33
SRP54-213ENST00000556994 PABPN1Q86U42 306 aaKnown RBP eCLIP17.13■□□□□ 0.33
SRP54-213ENST00000556994 GOLGA3Q08378 1498 aa17.12■□□□□ 0.33
SRP54-213ENST00000556994 YTHDC1Q96MU7 727 aaKnown RBP17.11■□□□□ 0.33
SRP54-213ENST00000556994 RANGAP1P46060 587 aaPredicted RBP17.04■□□□□ 0.32
SRP54-213ENST00000556994 MIER1Q8N108 512 aa17.01■□□□□ 0.31
SRP54-213ENST00000556994 BICRAQ9NZM4 1560 aa17■□□□□ 0.31
SRP54-213ENST00000556994 SYNJ1O43426 1573 aa16.99■□□□□ 0.31
SRP54-213ENST00000556994 CLIP1P30622 1438 aa16.99■□□□□ 0.31
SRP54-213ENST00000556994 CEP164Q9UPV0 1460 aa16.98■□□□□ 0.31
SRP54-213ENST00000556994 APLP2Q06481 763 aa16.94■□□□□ 0.3
SRP54-213ENST00000556994 KIF21BO75037 1637 aa16.92■□□□□ 0.3
SRP54-213ENST00000556994 RAPGEF2Q9Y4G8 1499 aa16.91■□□□□ 0.3
SRP54-213ENST00000556994 VPS8Q8N3P4 1428 aa16.91■□□□□ 0.3
SRP54-213ENST00000556994 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
SRP54-213ENST00000556994 ATAD2BQ9ULI0 1458 aa16.82■□□□□ 0.28
SRP54-213ENST00000556994 BAZ1BQ9UIG0 1483 aaKnown RBP16.8■□□□□ 0.28
SRP54-213ENST00000556994 KANK4Q5T7N3 995 aaPredicted RBP16.73■□□□□ 0.27
SRP54-213ENST00000556994 DHX57Q6P158 1386 aaKnown RBP16.71■□□□□ 0.27
SRP54-213ENST00000556994 TOP2BQ02880 1626 aa16.69■□□□□ 0.26
SRP54-213ENST00000556994 ARAP1Q96P48 1450 aa16.66■□□□□ 0.26
SRP54-213ENST00000556994 CLSPNQ9HAW4 1339 aa16.63■□□□□ 0.25
SRP54-213ENST00000556994 PRXQ9BXM0 1461 aa16.62■□□□□ 0.25
SRP54-213ENST00000556994 ITGAEP38570 1179 aa16.62■□□□□ 0.25
SRP54-213ENST00000556994 MYT1Q01538 1121 aa16.6■□□□□ 0.25
SRP54-213ENST00000556994 BIVM-ERCC5R4GMW8 1640 aa16.6■□□□□ 0.25
SRP54-213ENST00000556994 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
SRP54-213ENST00000556994 RRBP1Q9P2E9 1410 aaKnown RBP16.54■□□□□ 0.24
SRP54-213ENST00000556994 SUPT16HQ9Y5B9 1047 aaKnown RBP16.53■□□□□ 0.24
SRP54-213ENST00000556994 CUX1P39880 1505 aa16.53■□□□□ 0.24
SRP54-213ENST00000556994 CCNB3Q8WWL7 1395 aa16.51■□□□□ 0.23
SRP54-213ENST00000556994 KIF27Q86VH2 1401 aa16.51■□□□□ 0.23
SRP54-213ENST00000556994 ARHGAP35Q9NRY4 1499 aa16.48■□□□□ 0.23
SRP54-213ENST00000556994 KCNH8Q96L42 1107 aa16.48■□□□□ 0.23
SRP54-213ENST00000556994 HMGXB3Q12766 1538 aa16.46■□□□□ 0.23
SRP54-213ENST00000556994 CUX2O14529 1486 aa16.43■□□□□ 0.22
SRP54-213ENST00000556994 RAB3GAP2Q9H2M9 1393 aa16.43■□□□□ 0.22
SRP54-213ENST00000556994 NCAPD3P42695 1498 aa16.39■□□□□ 0.21
SRP54-213ENST00000556994 SIN3AQ96ST3 1273 aa16.37■□□□□ 0.21
SRP54-213ENST00000556994 MAPKBP1O60336 1514 aa16.37■□□□□ 0.21
SRP54-213ENST00000556994 CFTRP13569 1480 aa16.36■□□□□ 0.21
SRP54-213ENST00000556994 IGF1RP08069 1367 aa16.35■□□□□ 0.21
SRP54-213ENST00000556994 FAM50AQ14320 339 aaKnown RBP16.35■□□□□ 0.21
SRP54-213ENST00000556994 DDX10Q13206 875 aaKnown RBP16.34■□□□□ 0.21
SRP54-213ENST00000556994 P3H3Q8IVL6 736 aa16.34■□□□□ 0.21
SRP54-213ENST00000556994 TSHZ2Q9NRE2 1034 aa16.33■□□□□ 0.2
SRP54-213ENST00000556994 ATP1B4Q9UN42 357 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms