RNA–Protein interactions for RNA: ENST00000556548.5

SDR39U1-220, Transcript of short chain dehydrogenase/reductase family 39U member 1, humanhuman

TSL 2

Gene SDR39U1, Length 2,336 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDR39U1-220ENST00000556548 NISCHQ9Y2I1 1504 aa40.42■■■■■ 4.06
SDR39U1-220ENST00000556548 CCDC180Q9P1Z9 1646 aa34.85■■■■□ 3.17
SDR39U1-220ENST00000556548 ZCCHC6Q5VYS8 1495 aaKnown RBP33.99■■■■□ 3.03
SDR39U1-220ENST00000556548 DCAF8L2P0C7V8 631 aa33.76■■■□□ 2.99
SDR39U1-220ENST00000556548 SHROOM4Q9ULL8 1493 aa33.68■■■□□ 2.98
SDR39U1-220ENST00000556548 DCAF1Q9Y4B6 1507 aa33.2■■■□□ 2.91
SDR39U1-220ENST00000556548 ABCC9O60706 1549 aa33.08■■■□□ 2.89
SDR39U1-220ENST00000556548 MYO15BQ96JP2 1530 aa32.62■■■□□ 2.81
SDR39U1-220ENST00000556548 SUPT5HO00267 1087 aaKnown RBP32.57■■■□□ 2.81
SDR39U1-220ENST00000556548 NACADO15069 1562 aa32.46■■■□□ 2.79
SDR39U1-220ENST00000556548 SCRIBQ14160 1630 aa32.46■■■□□ 2.79
SDR39U1-220ENST00000556548 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
SDR39U1-220ENST00000556548 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
SDR39U1-220ENST00000556548 UNC13AQ9UPW8 1703 aa31.56■■■□□ 2.64
SDR39U1-220ENST00000556548 CECR2Q9BXF3 1484 aa31.56■■■□□ 2.64
SDR39U1-220ENST00000556548 PABPN1Q86U42 306 aaKnown RBP eCLIP31.42■■■□□ 2.622e-8■□□□□ 11.2
SDR39U1-220ENST00000556548 MROH2BQ7Z745 1585 aa31.35■■■□□ 2.61
SDR39U1-220ENST00000556548 BICRAQ9NZM4 1560 aa31.25■■■□□ 2.59
SDR39U1-220ENST00000556548 CHIC1Q5VXU3 224 aa31.2■■■□□ 2.58
SDR39U1-220ENST00000556548 BAZ1AQ9NRL2 1556 aaPredicted RBP31.13■■■□□ 2.57
SDR39U1-220ENST00000556548 WIZO95785 1651 aa31.12■■■□□ 2.57
SDR39U1-220ENST00000556548 SMARCA4P51532 1647 aa30.98■■■□□ 2.55
SDR39U1-220ENST00000556548 TOP2AP11388 1531 aaKnown RBP30.66■■■□□ 2.5
SDR39U1-220ENST00000556548 CCDC88BA6NC98 1476 aa30.49■■■□□ 2.47
SDR39U1-220ENST00000556548 TRIM41Q8WV44 630 aa30.45■■■□□ 2.47
SDR39U1-220ENST00000556548 PEG3Q9GZU2 1588 aa30.45■■■□□ 2.46
SDR39U1-220ENST00000556548 SMARCA2P51531 1590 aa30.44■■■□□ 2.46
SDR39U1-220ENST00000556548 ATAD2BQ9ULI0 1458 aa30.43■■■□□ 2.46
SDR39U1-220ENST00000556548 BAZ1BQ9UIG0 1483 aaKnown RBP30.3■■■□□ 2.44
SDR39U1-220ENST00000556548 EIF4G1Q04637 1599 aaKnown RBP30.29■■■□□ 2.44
SDR39U1-220ENST00000556548 LOC105371045A0A1W2PR82 267 aa30.22■■■□□ 2.43
SDR39U1-220ENST00000556548 FAM9AQ8IZU1 332 aaPredicted RBP30.12■■■□□ 2.41
SDR39U1-220ENST00000556548 ABCC8Q09428 1581 aa30.06■■■□□ 2.4
SDR39U1-220ENST00000556548 NCAPD3P42695 1498 aa30.03■■■□□ 2.4
SDR39U1-220ENST00000556548 HMGXB3Q12766 1538 aa29.94■■■□□ 2.38
SDR39U1-220ENST00000556548 EHMT2Q96KQ7 1210 aa29.88■■■□□ 2.37
SDR39U1-220ENST00000556548 CC2D2AQ9P2K1 1620 aa29.79■■■□□ 2.36
SDR39U1-220ENST00000556548 WRNQ14191 1432 aaPredicted RBP eCLIP29.71■■■□□ 2.35
SDR39U1-220ENST00000556548 SOGA1O94964 1423 aa29.59■■■□□ 2.33
SDR39U1-220ENST00000556548 SYNJ1O43426 1573 aa29.58■■■□□ 2.33
SDR39U1-220ENST00000556548 CFTRP13569 1480 aa29.5■■■□□ 2.31
SDR39U1-220ENST00000556548 RUSC2Q8N2Y8 1516 aa29.49■■■□□ 2.31
SDR39U1-220ENST00000556548 CADPSQ9ULU8 1353 aa29.38■■■□□ 2.29
SDR39U1-220ENST00000556548 CSRNP3Q8WYN3 585 aa29.36■■■□□ 2.29
SDR39U1-220ENST00000556548 TOP2BQ02880 1626 aa29.32■■■□□ 2.28
SDR39U1-220ENST00000556548 EEA1Q15075 1411 aa29.31■■■□□ 2.28
SDR39U1-220ENST00000556548 DNAJC5BQ9UF47 199 aa29.28■■■□□ 2.28
SDR39U1-220ENST00000556548 CUX1P39880 1505 aa29.26■■■□□ 2.27
SDR39U1-220ENST00000556548 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
SDR39U1-220ENST00000556548 PCGF6Q9BYE7 350 aa29.2■■■□□ 2.27
SDR39U1-220ENST00000556548 PRDM2Q13029 1718 aa29.19■■■□□ 2.26
SDR39U1-220ENST00000556548 NESP48681 1621 aa29.16■■■□□ 2.26
SDR39U1-220ENST00000556548 UBTFP17480 764 aaKnown RBP29.15■■■□□ 2.26
SDR39U1-220ENST00000556548 FANCD2Q9BXW9 1451 aa29.08■■■□□ 2.25
SDR39U1-220ENST00000556548 GOLGA3Q08378 1498 aa29.05■■■□□ 2.24
SDR39U1-220ENST00000556548 TNIKQ9UKE5 1360 aa29.03■■■□□ 2.24
SDR39U1-220ENST00000556548 CEP164Q9UPV0 1460 aa29■■■□□ 2.23
SDR39U1-220ENST00000556548 CEP162Q5TB80 1403 aa28.99■■■□□ 2.23
SDR39U1-220ENST00000556548 KIF21BO75037 1637 aa28.94■■■□□ 2.22
SDR39U1-220ENST00000556548 RAPGEF2Q9Y4G8 1499 aa28.92■■■□□ 2.22
SDR39U1-220ENST00000556548 PPARGC1BQ86YN6 1023 aaKnown RBP28.92■■■□□ 2.22
SDR39U1-220ENST00000556548 LAMC3Q9Y6N6 1575 aa28.9■■■□□ 2.22
SDR39U1-220ENST00000556548 TRIM26Q12899 539 aaPredicted RBP28.9■■■□□ 2.22
SDR39U1-220ENST00000556548 KIF27Q86VH2 1401 aa28.9■■■□□ 2.22
SDR39U1-220ENST00000556548 FGD5Q6ZNL6 1462 aa28.9■■■□□ 2.22
SDR39U1-220ENST00000556548 CUX2O14529 1486 aa28.82■■■□□ 2.2
SDR39U1-220ENST00000556548 RANGAP1P46060 587 aaPredicted RBP28.81■■■□□ 2.2
SDR39U1-220ENST00000556548 TOPBP1Q92547 1522 aa28.78■■■□□ 2.2
SDR39U1-220ENST00000556548 DNMBPQ6XZF7 1577 aa28.78■■■□□ 2.2
SDR39U1-220ENST00000556548 PDS5BQ9NTI5 1447 aa28.77■■■□□ 2.2
SDR39U1-220ENST00000556548 PRXQ9BXM0 1461 aa28.76■■■□□ 2.2
SDR39U1-220ENST00000556548 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
SDR39U1-220ENST00000556548 URB2Q14146 1524 aaKnown RBP28.71■■■□□ 2.19
SDR39U1-220ENST00000556548 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
SDR39U1-220ENST00000556548 CLIP1P30622 1438 aa28.68■■■□□ 2.18
SDR39U1-220ENST00000556548 IGF1RP08069 1367 aa28.67■■■□□ 2.18
SDR39U1-220ENST00000556548 ERICH3Q5RHP9 1530 aa28.66■■■□□ 2.18
SDR39U1-220ENST00000556548 KIF21AQ7Z4S6 1674 aa28.65■■■□□ 2.18
SDR39U1-220ENST00000556548 TTBK1Q5TCY1 1321 aaPredicted RBP28.65■■■□□ 2.18
SDR39U1-220ENST00000556548 ABCA10Q8WWZ4 1543 aa28.55■■■□□ 2.16
SDR39U1-220ENST00000556548 CARMIL1Q5VZK9 1371 aa28.54■■■□□ 2.16
SDR39U1-220ENST00000556548 HRCP23327 699 aa28.49■■■□□ 2.15
SDR39U1-220ENST00000556548 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.15
SDR39U1-220ENST00000556548 VPS8Q8N3P4 1428 aa28.41■■■□□ 2.14
SDR39U1-220ENST00000556548 MRC2Q9UBG0 1479 aa28.37■■■□□ 2.13
SDR39U1-220ENST00000556548 WDR97A6NE52 1622 aa28.35■■■□□ 2.13
SDR39U1-220ENST00000556548 ARAP1Q96P48 1450 aa28.32■■■□□ 2.12
SDR39U1-220ENST00000556548 GAPVD1Q14C86 1478 aa28.29■■■□□ 2.12
SDR39U1-220ENST00000556548 APLP2Q06481 763 aa28.28■■■□□ 2.12
SDR39U1-220ENST00000556548 ERCC6Q03468 1493 aa28.27■■■□□ 2.12
SDR39U1-220ENST00000556548 ABCA5Q8WWZ7 1642 aa28.26■■■□□ 2.12
SDR39U1-220ENST00000556548 TARBP1Q13395 1621 aaKnown RBP28.26■■■□□ 2.11
SDR39U1-220ENST00000556548 ARHGAP35Q9NRY4 1499 aa28.26■■■□□ 2.11
SDR39U1-220ENST00000556548 CUL7Q14999 1698 aa28.21■■■□□ 2.11
SDR39U1-220ENST00000556548 AQRO60306 1485 aaKnown RBP eCLIP28.18■■■□□ 2.1
SDR39U1-220ENST00000556548 WDR62O43379 1518 aa28.16■■■□□ 2.1
SDR39U1-220ENST00000556548 P3H3Q8IVL6 736 aa28.15■■■□□ 2.1
SDR39U1-220ENST00000556548 ZNF608Q9ULD9 1512 aaPredicted RBP28.08■■■□□ 2.09
SDR39U1-220ENST00000556548 IFT140Q96RY7 1462 aa28.06■■■□□ 2.08
SDR39U1-220ENST00000556548 KANK4Q5T7N3 995 aaPredicted RBP28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms