RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 AEBP2Q6ZN18 517 aaPredicted RBP28.99■■■□□ 2.23
SCFD1-217ENST00000555953 CHIC1Q5VXU3 224 aa27.72■■■□□ 2.03
SCFD1-217ENST00000555953 SENP3Q9H4L4 574 aaPredicted RBP24.63■■□□□ 1.53
SCFD1-217ENST00000555953 PHF23Q9BUL5 403 aaPredicted RBP24.37■■□□□ 1.49
SCFD1-217ENST00000555953 FOXD1Q16676 465 aa22.97■■□□□ 1.27
SCFD1-217ENST00000555953 PLPPR3Q6T4P5 718 aa22.23■■□□□ 1.15
SCFD1-217ENST00000555953 PPP6R1Q9UPN7 881 aa21.68■■□□□ 1.06
SCFD1-217ENST00000555953 ADRA2BP18089 450 aa21.61■■□□□ 1.05
SCFD1-217ENST00000555953 PIAS4Q8N2W9 510 aaPredicted RBP21.5■■□□□ 1.03
SCFD1-217ENST00000555953 MSH5O43196 834 aa21.35■■□□□ 1.01
SCFD1-217ENST00000555953 POTEDQ86YR6 584 aa20.48■□□□□ 0.87
SCFD1-217ENST00000555953 MAPK8IP2Q13387 824 aaPredicted RBP19.79■□□□□ 0.76
SCFD1-217ENST00000555953 SCAF1Q9H7N4 1312 aaKnown RBP19.7■□□□□ 0.74
SCFD1-217ENST00000555953 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
SCFD1-217ENST00000555953 PPP4R3CPQ6ZMV5 832 aa19.54■□□□□ 0.72
SCFD1-217ENST00000555953 CNKSR2Q8WXI2 1034 aa19.1■□□□□ 0.65
SCFD1-217ENST00000555953 HOXD11P31277 338 aaPredicted RBP18.96■□□□□ 0.63
SCFD1-217ENST00000555953 RNF216Q9NWF9 866 aaPredicted RBP18.87■□□□□ 0.61
SCFD1-217ENST00000555953 NCBP3Q53F19 620 aaKnown RBP18.83■□□□□ 0.6
SCFD1-217ENST00000555953 DCAF8L1A6NGE4 600 aa18.76■□□□□ 0.59
SCFD1-217ENST00000555953 NPM3O75607 178 aaKnown RBP18.6■□□□□ 0.57
SCFD1-217ENST00000555953 KCNA4P22459 653 aa18.47■□□□□ 0.55
SCFD1-217ENST00000555953 RNF39Q9H2S5 420 aa18.27■□□□□ 0.52
SCFD1-217ENST00000555953 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
SCFD1-217ENST00000555953 CACNB1Q02641 598 aaPredicted RBP18.19■□□□□ 0.5
SCFD1-217ENST00000555953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.05■□□□□ 0.482e-7■□□□□ 11.3
SCFD1-217ENST00000555953 C1QBPQ07021 282 aaKnown RBP17.99■□□□□ 0.47
SCFD1-217ENST00000555953 U3KPZ7 1027 aaPredicted RBP17.73■□□□□ 0.43
SCFD1-217ENST00000555953 SLC4A2P04920 1241 aa17.72■□□□□ 0.43
SCFD1-217ENST00000555953 SLC4A1APQ9BWU0 796 aaKnown RBP17.46■□□□□ 0.39
SCFD1-217ENST00000555953 SPINK5Q9NQ38 1064 aaPredicted RBP17.41■□□□□ 0.38
SCFD1-217ENST00000555953 CAPN15O75808 1086 aa17.34■□□□□ 0.37
SCFD1-217ENST00000555953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
SCFD1-217ENST00000555953 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
SCFD1-217ENST00000555953 DSG3P32926 999 aa17.19■□□□□ 0.34
SCFD1-217ENST00000555953 APLP2Q06481 763 aa17.18■□□□□ 0.34
SCFD1-217ENST00000555953 SAMD1Q6SPF0 538 aaPredicted RBP17.18■□□□□ 0.34
SCFD1-217ENST00000555953 MYCNP04198 464 aaPredicted RBP17.17■□□□□ 0.34
SCFD1-217ENST00000555953 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
SCFD1-217ENST00000555953 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
SCFD1-217ENST00000555953 ZNF219Q9P2Y4 722 aaPredicted RBP17.07■□□□□ 0.32
SCFD1-217ENST00000555953 ZBTB22O15209 634 aa17.02■□□□□ 0.32
SCFD1-217ENST00000555953 ABCB7O75027 752 aa16.99■□□□□ 0.31
SCFD1-217ENST00000555953 ATF5Q9Y2D1 282 aaPredicted RBP16.81■□□□□ 0.28
SCFD1-217ENST00000555953 POLA2Q14181 598 aa16.72■□□□□ 0.27
SCFD1-217ENST00000555953 ATXN8OSP0DMR3 200 aa16.56■□□□□ 0.24
SCFD1-217ENST00000555953 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
SCFD1-217ENST00000555953 ZBTB12Q9Y330 459 aaPredicted RBP16.37■□□□□ 0.21
SCFD1-217ENST00000555953 RBM42Q9BTD8 480 aaKnown RBP16.36■□□□□ 0.21
SCFD1-217ENST00000555953 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
SCFD1-217ENST00000555953 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
SCFD1-217ENST00000555953 POTEHQ6S545 545 aa16.09■□□□□ 0.17
SCFD1-217ENST00000555953 FBLN2P98095 1184 aa16.07■□□□□ 0.16
SCFD1-217ENST00000555953 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
SCFD1-217ENST00000555953 AKT1S1Q96B36 256 aa16.05■□□□□ 0.16
SCFD1-217ENST00000555953 CHRDL2Q6WN34 429 aa15.94■□□□□ 0.14
SCFD1-217ENST00000555953 REM2Q8IYK8 340 aaPredicted RBP15.92■□□□□ 0.14
SCFD1-217ENST00000555953 SPDYE2BA6NHP3 402 aa15.9■□□□□ 0.14
SCFD1-217ENST00000555953 SPDYE6P0CI01 402 aa15.9■□□□□ 0.14
SCFD1-217ENST00000555953 SPDYE2Q495Y8 402 aa15.9■□□□□ 0.14
SCFD1-217ENST00000555953 PITPNM1O00562 1244 aa15.76■□□□□ 0.11
SCFD1-217ENST00000555953 ZNF692Q9BU19 519 aaPredicted RBP15.75■□□□□ 0.11
SCFD1-217ENST00000555953 SSUH2Q9Y2M2 353 aa15.74■□□□□ 0.11
SCFD1-217ENST00000555953 PIP4P2Q8N4L2 257 aa15.63■□□□□ 0.09
SCFD1-217ENST00000555953 FXR2P51116 673 aaKnown RBP eCLIP15.56■□□□□ 0.08
SCFD1-217ENST00000555953 SPDYE1Q8NFV5 336 aaPredicted RBP15.56■□□□□ 0.08
SCFD1-217ENST00000555953 PABPN1Q86U42 306 aaKnown RBP eCLIP15.54■□□□□ 0.08
SCFD1-217ENST00000555953 CLEC11AQ9Y240 323 aa15.53■□□□□ 0.08
SCFD1-217ENST00000555953 SPDYE4A6NLX3 237 aa15.38■□□□□ 0.05
SCFD1-217ENST00000555953 PRKAR2AP13861 404 aaKnown RBP15.34■□□□□ 0.05
SCFD1-217ENST00000555953 PRR29P0C7W0 189 aa15.3■□□□□ 0.04
SCFD1-217ENST00000555953 HAX1O00165 279 aa15.25■□□□□ 0.03
SCFD1-217ENST00000555953 CHADLQ6NUI6 762 aa15.24■□□□□ 0.03
SCFD1-217ENST00000555953 SP7Q8TDD2 431 aaPredicted RBP15.18■□□□□ 0.02
SCFD1-217ENST00000555953 EVX2Q03828 476 aa15.13■□□□□ 0.01
SCFD1-217ENST00000555953 STAG3Q9UJ98 1225 aa15.12■□□□□ 0.01
SCFD1-217ENST00000555953 C19orf67A6NJJ6 358 aa15.06■□□□□ 0
SCFD1-217ENST00000555953 PROM2Q8N271 834 aa15.06■□□□□ 0
SCFD1-217ENST00000555953 FARP1Q9Y4F1 1045 aaPredicted RBP15.02■□□□□ -0
SCFD1-217ENST00000555953 CREBZFQ9NS37 354 aa15.01□□□□□ -0.01
SCFD1-217ENST00000555953 CD44P16070 742 aaKnown RBP14.86□□□□□ -0.03
SCFD1-217ENST00000555953 FKBP8Q14318 412 aa14.86□□□□□ -0.03
SCFD1-217ENST00000555953 MNX1P50219 401 aaPredicted RBP14.79□□□□□ -0.04
SCFD1-217ENST00000555953 GABBR2O75899 941 aa14.77□□□□□ -0.05
SCFD1-217ENST00000555953 NPM1P06748 294 aaKnown RBP eCLIP14.69□□□□□ -0.06
SCFD1-217ENST00000555953 ZRANB1Q9UGI0 708 aa14.69□□□□□ -0.06
SCFD1-217ENST00000555953 ZNF579Q8NAF0 562 aaKnown RBP14.65□□□□□ -0.06
SCFD1-217ENST00000555953 MIER1Q8N108 512 aa14.63□□□□□ -0.07
SCFD1-217ENST00000555953 PAK3O75914 559 aaPredicted RBP14.58□□□□□ -0.08
SCFD1-217ENST00000555953 CLCN6P51797 869 aa14.56□□□□□ -0.08
SCFD1-217ENST00000555953 PLEKHG5O94827 1062 aa14.55□□□□□ -0.08
SCFD1-217ENST00000555953 PLCD3Q8N3E9 789 aa14.54□□□□□ -0.08
SCFD1-217ENST00000555953 PHF12Q96QT6 1004 aa14.54□□□□□ -0.08
SCFD1-217ENST00000555953 POTEIP0CG38 1075 aa14.49□□□□□ -0.09
SCFD1-217ENST00000555953 GALR2O43603 387 aaPredicted RBP14.47□□□□□ -0.09
SCFD1-217ENST00000555953 TSPYL2Q9H2G4 693 aaPredicted RBP14.47□□□□□ -0.09
SCFD1-217ENST00000555953 FBXO3Q9UK99 471 aa14.44□□□□□ -0.1
SCFD1-217ENST00000555953 RASEFQ8IZ41 740 aa14.42□□□□□ -0.1
SCFD1-217ENST00000555953 DCBLD2Q96PD2 775 aa14.4□□□□□ -0.1
SCFD1-217ENST00000555953 CCDC61Q9Y6R9 512 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms