RNA–Protein interactions for RNA: ENST00000555609.5

TUBB3-209, Transcript of tubulin beta 3 class III, humanhuman

TSL 3

Gene TUBB3, Length 1,855 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-209ENST00000555609 NISCHQ9Y2I1 1504 aa33.49■■■□□ 2.95
TUBB3-209ENST00000555609 CCDC180Q9P1Z9 1646 aa28.6■■■□□ 2.17
TUBB3-209ENST00000555609 ZCCHC6Q5VYS8 1495 aaKnown RBP28.36■■■□□ 2.13
TUBB3-209ENST00000555609 SHROOM4Q9ULL8 1493 aa28.13■■■□□ 2.09
TUBB3-209ENST00000555609 ABCC9O60706 1549 aa27.73■■■□□ 2.03
TUBB3-209ENST00000555609 DCAF1Q9Y4B6 1507 aa27.72■■■□□ 2.03
TUBB3-209ENST00000555609 SUPT5HO00267 1087 aaKnown RBP27.7■■■□□ 2.02
TUBB3-209ENST00000555609 DCAF8L2P0C7V8 631 aa27.3■■□□□ 1.96
TUBB3-209ENST00000555609 CHIC1Q5VXU3 224 aa27.17■■□□□ 1.94
TUBB3-209ENST00000555609 MYO15BQ96JP2 1530 aa26.95■■□□□ 1.91
TUBB3-209ENST00000555609 RB1CC1Q8TDY2 1594 aa26.6■■□□□ 1.85
TUBB3-209ENST00000555609 NACADO15069 1562 aa26.59■■□□□ 1.85
TUBB3-209ENST00000555609 HRCP23327 699 aa26.49■■□□□ 1.83
TUBB3-209ENST00000555609 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
TUBB3-209ENST00000555609 RSF1Q96T23 1441 aaPredicted RBP26.45■■□□□ 1.83
TUBB3-209ENST00000555609 PCGF6Q9BYE7 350 aa26.23■■□□□ 1.79
TUBB3-209ENST00000555609 LOC105371045A0A1W2PR82 267 aa26.15■■□□□ 1.78
TUBB3-209ENST00000555609 UNC13AQ9UPW8 1703 aa26.13■■□□□ 1.77
TUBB3-209ENST00000555609 PABPN1Q86U42 306 aaKnown RBP eCLIP26■■□□□ 1.75
TUBB3-209ENST00000555609 TRIM26Q12899 539 aaPredicted RBP25.99■■□□□ 1.75
TUBB3-209ENST00000555609 TRIM41Q8WV44 630 aa25.99■■□□□ 1.75
TUBB3-209ENST00000555609 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
TUBB3-209ENST00000555609 MROH2BQ7Z745 1585 aa25.9■■□□□ 1.74
TUBB3-209ENST00000555609 BICRAQ9NZM4 1560 aa25.87■■□□□ 1.73
TUBB3-209ENST00000555609 BAZ1AQ9NRL2 1556 aaPredicted RBP25.76■■□□□ 1.71
TUBB3-209ENST00000555609 WIZO95785 1651 aa25.73■■□□□ 1.71
TUBB3-209ENST00000555609 ZEB1P37275 1124 aaPredicted RBP25.64■■□□□ 1.7
TUBB3-209ENST00000555609 PPARGC1BQ86YN6 1023 aaKnown RBP25.57■■□□□ 1.68
TUBB3-209ENST00000555609 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
TUBB3-209ENST00000555609 TOP2AP11388 1531 aaKnown RBP25.53■■□□□ 1.68
TUBB3-209ENST00000555609 FAM9AQ8IZU1 332 aaPredicted RBP25.49■■□□□ 1.67
TUBB3-209ENST00000555609 SMARCA4P51532 1647 aa25.46■■□□□ 1.67
TUBB3-209ENST00000555609 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
TUBB3-209ENST00000555609 CCDC88BA6NC98 1476 aa25.3■■□□□ 1.64
TUBB3-209ENST00000555609 DNAJC5BQ9UF47 199 aa25.28■■□□□ 1.64
TUBB3-209ENST00000555609 EEA1Q15075 1411 aa25.19■■□□□ 1.62
TUBB3-209ENST00000555609 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
TUBB3-209ENST00000555609 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
TUBB3-209ENST00000555609 ABCC8Q09428 1581 aa25.09■■□□□ 1.61
TUBB3-209ENST00000555609 EHMT2Q96KQ7 1210 aa25.05■■□□□ 1.6
TUBB3-209ENST00000555609 TNIKQ9UKE5 1360 aa25.04■■□□□ 1.6
TUBB3-209ENST00000555609 CC2D2AQ9P2K1 1620 aa25.03■■□□□ 1.6
TUBB3-209ENST00000555609 CEP162Q5TB80 1403 aa24.94■■□□□ 1.58
TUBB3-209ENST00000555609 CSRNP3Q8WYN3 585 aa24.93■■□□□ 1.58
TUBB3-209ENST00000555609 SOGA1O94964 1423 aa24.92■■□□□ 1.58
TUBB3-209ENST00000555609 GOLGA3Q08378 1498 aa24.85■■□□□ 1.57
TUBB3-209ENST00000555609 ATAD2BQ9ULI0 1458 aa24.79■■□□□ 1.56
TUBB3-209ENST00000555609 CCER1Q8TC90 406 aaPredicted RBP24.73■■□□□ 1.55
TUBB3-209ENST00000555609 RUSC2Q8N2Y8 1516 aa24.73■■□□□ 1.55
TUBB3-209ENST00000555609 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
TUBB3-209ENST00000555609 KIF21BO75037 1637 aa24.72■■□□□ 1.55
TUBB3-209ENST00000555609 BAZ1BQ9UIG0 1483 aaKnown RBP24.71■■□□□ 1.55
TUBB3-209ENST00000555609 UBTFP17480 764 aaKnown RBP24.7■■□□□ 1.54
TUBB3-209ENST00000555609 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.66■■□□□ 1.54
TUBB3-209ENST00000555609 SYNJ1O43426 1573 aa24.66■■□□□ 1.54
TUBB3-209ENST00000555609 NCAPD3P42695 1498 aa24.55■■□□□ 1.52
TUBB3-209ENST00000555609 TOP2BQ02880 1626 aa24.49■■□□□ 1.51
TUBB3-209ENST00000555609 CLIP1P30622 1438 aa24.49■■□□□ 1.51
TUBB3-209ENST00000555609 VPS8Q8N3P4 1428 aa24.45■■□□□ 1.5
TUBB3-209ENST00000555609 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
TUBB3-209ENST00000555609 BIVM-ERCC5R4GMW8 1640 aa24.44■■□□□ 1.5
TUBB3-209ENST00000555609 ERICH3Q5RHP9 1530 aa24.36■■□□□ 1.49
TUBB3-209ENST00000555609 RAPGEF2Q9Y4G8 1499 aa24.35■■□□□ 1.49
TUBB3-209ENST00000555609 TTBK1Q5TCY1 1321 aaPredicted RBP24.32■■□□□ 1.48
TUBB3-209ENST00000555609 DIEXFQ68CQ4 756 aaKnown RBP24.32■■□□□ 1.48
TUBB3-209ENST00000555609 APLP2Q06481 763 aa24.3■■□□□ 1.48
TUBB3-209ENST00000555609 PELP1Q8IZL8 1130 aaKnown RBP24.3■■□□□ 1.48
TUBB3-209ENST00000555609 PRXQ9BXM0 1461 aa24.28■■□□□ 1.48
TUBB3-209ENST00000555609 SCAF1Q9H7N4 1312 aaKnown RBP24.28■■□□□ 1.48
TUBB3-209ENST00000555609 ZNF316A6NFI3 1004 aaPredicted RBP24.21■■□□□ 1.47
TUBB3-209ENST00000555609 ACIN1Q9UKV3 1341 aaKnown RBP24.2■■□□□ 1.47
TUBB3-209ENST00000555609 CENPBP07199 599 aaPredicted RBP24.17■■□□□ 1.46
TUBB3-209ENST00000555609 CFTRP13569 1480 aa24.17■■□□□ 1.46
TUBB3-209ENST00000555609 KIF27Q86VH2 1401 aa24.15■■□□□ 1.46
TUBB3-209ENST00000555609 CUX1P39880 1505 aa24.14■■□□□ 1.45
TUBB3-209ENST00000555609 CLSPNQ9HAW4 1339 aa24.11■■□□□ 1.45
TUBB3-209ENST00000555609 HNRNPUL2Q1KMD3 747 aaKnown RBP24.09■■□□□ 1.45
TUBB3-209ENST00000555609 NESP48681 1621 aa24.08■■□□□ 1.45
TUBB3-209ENST00000555609 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
TUBB3-209ENST00000555609 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
TUBB3-209ENST00000555609 NEUROD1Q13562 356 aa24.01■■□□□ 1.43
TUBB3-209ENST00000555609 RRBP1Q9P2E9 1410 aaKnown RBP23.94■■□□□ 1.42
TUBB3-209ENST00000555609 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
TUBB3-209ENST00000555609 CUX2O14529 1486 aa23.87■■□□□ 1.41
TUBB3-209ENST00000555609 LAMC3Q9Y6N6 1575 aa23.87■■□□□ 1.41
TUBB3-209ENST00000555609 RANGAP1P46060 587 aaPredicted RBP23.87■■□□□ 1.41
TUBB3-209ENST00000555609 ARHGAP35Q9NRY4 1499 aa23.86■■□□□ 1.41
TUBB3-209ENST00000555609 MAP3K1Q13233 1512 aa23.86■■□□□ 1.41
TUBB3-209ENST00000555609 DHX57Q6P158 1386 aaKnown RBP23.83■■□□□ 1.41
TUBB3-209ENST00000555609 ERCC6Q03468 1493 aa23.83■■□□□ 1.41
TUBB3-209ENST00000555609 IGF1RP08069 1367 aa23.82■■□□□ 1.4
TUBB3-209ENST00000555609 KANK4Q5T7N3 995 aaPredicted RBP23.81■■□□□ 1.4
TUBB3-209ENST00000555609 GTF3C3Q9Y5Q9 886 aa23.79■■□□□ 1.4
TUBB3-209ENST00000555609 KIF21AQ7Z4S6 1674 aa23.77■■□□□ 1.4
TUBB3-209ENST00000555609 CCNB3Q8WWL7 1395 aa23.76■■□□□ 1.39
TUBB3-209ENST00000555609 CARMIL1Q5VZK9 1371 aa23.72■■□□□ 1.39
TUBB3-209ENST00000555609 MIER1Q8N108 512 aa23.7■■□□□ 1.39
TUBB3-209ENST00000555609 PDS5BQ9NTI5 1447 aa23.7■■□□□ 1.39
TUBB3-209ENST00000555609 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
TUBB3-209ENST00000555609 TIAM1Q13009 1591 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms