RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 U2AF1Q01081 240 aaKnown RBP eCLIP13.61□□□□□ -0.232e-23■■■■■ 60.6
SRP54-208ENST00000555557 SMNDC1O75940 238 aaKnown RBP eCLIP9.33□□□□□ -0.923e-23■■■■□ 22.6
SRP54-208ENST00000555557 DDX3XO00571 662 aaKnown RBP eCLIP10.91□□□□□ -0.662e-11■■■□□ 16.3
SRP54-208ENST00000555557 AQRO60306 1485 aaKnown RBP eCLIP16.65■□□□□ 0.267e-11■■■■□ 23.2
SRP54-208ENST00000555557 HNRNPLP14866 589 aaKnown RBP eCLIP10.25□□□□□ -0.778e-11■■□□□ 12.2
SRP54-208ENST00000555557 SF3A3Q12874 501 aaKnown RBP eCLIP10□□□□□ -0.812e-10■■■■□ 21
SRP54-208ENST00000555557 MATR3P43243 847 aaKnown RBP eCLIP11.15□□□□□ -0.625e-10■■■■□ 24.4
SRP54-208ENST00000555557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.02■□□□□ -06e-10■■■□□ 14.9
SRP54-208ENST00000555557 PCBP1Q15365 356 aaKnown RBP eCLIP11.07□□□□□ -0.648e-10■■□□□ 11.9
SRP54-208ENST00000555557 SF3B1O75533 1304 aaKnown RBP eCLIP10.81□□□□□ -0.688e-10■■■■■ 32.7
SRP54-208ENST00000555557 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.282e-9■■■□□ 17
SRP54-208ENST00000555557 QKIQ96PU8 341 aaKnown RBP eCLIP10.47□□□□□ -0.734e-9■■■■■ 35.8
SRP54-208ENST00000555557 TIA1P31483 386 aaKnown RBP eCLIP9.72□□□□□ -0.854e-9■■■■□ 19.7
SRP54-208ENST00000555557 PTBP1P26599 531 aaKnown RBP eCLIP8.6□□□□□ -1.038e-9■■■■□ 22.1
SRP54-208ENST00000555557 PABPC4Q13310 644 aaKnown RBP eCLIP11.64□□□□□ -0.551e-8■■□□□ 12.5
SRP54-208ENST00000555557 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.07□□□□□ -0.641e-8■■■■■ 51.2
SRP54-208ENST00000555557 SF3B4Q15427 424 aaKnown RBP eCLIP8.97□□□□□ -0.972e-8■■□□□ 14.5
SRP54-208ENST00000555557 EFTUD2Q15029 972 aaKnown RBP eCLIP10.28□□□□□ -0.767e-8■□□□□ 11.2
SRP54-208ENST00000555557 ZC3H11AO75152 810 aaKnown RBP eCLIP10.97□□□□□ -0.657e-8■□□□□ 9.3
SRP54-208ENST00000555557 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.25□□□□□ -1.097e-8■■■■■ 26.8
SRP54-208ENST00000555557 KHSRPQ92945 711 aaKnown RBP eCLIP10.74□□□□□ -0.699e-8■□□□□ 9.3
SRP54-208ENST00000555557 U2AF2P26368 475 aaKnown RBP eCLIP11.74□□□□□ -0.531e-7■■■■■ 102.2
SRP54-208ENST00000555557 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.071e-7■■□□□ 13.5
SRP54-208ENST00000555557 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.68□□□□□ -0.71e-7■□□□□ 8.7
SRP54-208ENST00000555557 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.7□□□□□ -0.862e-7■□□□□ 11.3
SRP54-208ENST00000555557 FMR1Q06787 632 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■□□□□ 8.6
SRP54-208ENST00000555557 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.06□□□□□ -0.643e-7■■■□□ 16.5
SRP54-208ENST00000555557 HNRNPCP07910 306 aaKnown RBP eCLIP8.93□□□□□ -0.985e-7■■■□□ 16.2
SRP54-208ENST00000555557 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.9□□□□□ -0.185e-7■■□□□ 13.5
SRP54-208ENST00000555557 TIAL1Q01085 375 aaKnown RBP eCLIP10.11□□□□□ -0.796e-7■■■■□ 24.2
SRP54-208ENST00000555557 PPIGQ13427 754 aaKnown RBP eCLIP10.88□□□□□ -0.676e-7■□□□□ 10.2
SRP54-208ENST00000555557 ZNF622Q969S3 477 aaKnown RBP eCLIP12.47□□□□□ -0.417e-7■■□□□ 11.8
SRP54-208ENST00000555557 EIF4G2P78344 907 aaKnown RBP eCLIP14.43□□□□□ -0.18e-7■■■■■ 28.7
SRP54-208ENST00000555557 ILF3Q12906 894 aaKnown RBP eCLIP9.93□□□□□ -0.828e-7■■■□□ 18.6
SRP54-208ENST00000555557 G3BP1Q13283 466 aaKnown RBP eCLIP12.63□□□□□ -0.391e-6■■□□□ 11.8
SRP54-208ENST00000555557 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.31□□□□□ -0.442e-6■■■□□ 16
SRP54-208ENST00000555557 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.19□□□□□ -0.942e-6■■□□□ 13.9
SRP54-208ENST00000555557 FXR2P51116 673 aaKnown RBP eCLIP11.52□□□□□ -0.572e-6■■■□□ 15.9
SRP54-208ENST00000555557 PCBP2Q15366 365 aaKnown RBP eCLIP9.93□□□□□ -0.823e-6■■■■□ 22.2
SRP54-208ENST00000555557 EIF3HO15372 352 aaKnown RBP eCLIP10.31□□□□□ -0.764e-6■■■■■ 29.2
SRP54-208ENST00000555557 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.95□□□□□ -0.666e-6■■■□□ 19.1
SRP54-208ENST00000555557 RPS3P23396 243 aaKnown RBP eCLIP10.08□□□□□ -0.88e-6■■□□□ 12.6
SRP54-208ENST00000555557 SND1Q7KZF4 910 aaKnown RBP eCLIP10.6□□□□□ -0.718e-6■□□□□ 9.2
Retrieved 43 of 43 RNA–protein pairs in 10.7 ms