RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 NISCHQ9Y2I1 1504 aa23.58■■□□□ 1.37
SRP54-208ENST00000555557 CCDC180Q9P1Z9 1646 aa20.58■□□□□ 0.89
SRP54-208ENST00000555557 ABCC9O60706 1549 aa19.84■□□□□ 0.77
SRP54-208ENST00000555557 ZCCHC6Q5VYS8 1495 aaKnown RBP19.75■□□□□ 0.75
SRP54-208ENST00000555557 DCAF8L2P0C7V8 631 aa19.71■□□□□ 0.75
SRP54-208ENST00000555557 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
SRP54-208ENST00000555557 MYO15BQ96JP2 1530 aa19.29■□□□□ 0.68
SRP54-208ENST00000555557 NACADO15069 1562 aa19.28■□□□□ 0.68
SRP54-208ENST00000555557 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
SRP54-208ENST00000555557 RB1CC1Q8TDY2 1594 aa19.18■□□□□ 0.66
SRP54-208ENST00000555557 SCRIBQ14160 1630 aa19■□□□□ 0.63
SRP54-208ENST00000555557 UNC13AQ9UPW8 1703 aa18.75■□□□□ 0.59
SRP54-208ENST00000555557 PABPN1Q86U42 306 aaKnown RBP eCLIP18.72■□□□□ 0.59
SRP54-208ENST00000555557 BICRAQ9NZM4 1560 aa18.63■□□□□ 0.57
SRP54-208ENST00000555557 CECR2Q9BXF3 1484 aa18.4■□□□□ 0.54
SRP54-208ENST00000555557 SUPT5HO00267 1087 aaKnown RBP18.35■□□□□ 0.53
SRP54-208ENST00000555557 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
SRP54-208ENST00000555557 MROH2BQ7Z745 1585 aa18.24■□□□□ 0.51
SRP54-208ENST00000555557 RSF1Q96T23 1441 aaPredicted RBP18.24■□□□□ 0.51
SRP54-208ENST00000555557 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
SRP54-208ENST00000555557 SMARCA4P51532 1647 aa18.16■□□□□ 0.5
SRP54-208ENST00000555557 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
SRP54-208ENST00000555557 WIZO95785 1651 aa18.06■□□□□ 0.48
SRP54-208ENST00000555557 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
SRP54-208ENST00000555557 PEG3Q9GZU2 1588 aa17.92■□□□□ 0.46
SRP54-208ENST00000555557 SMARCA2P51531 1590 aa17.9■□□□□ 0.46
SRP54-208ENST00000555557 CC2D2AQ9P2K1 1620 aa17.89■□□□□ 0.45
SRP54-208ENST00000555557 BAZ1BQ9UIG0 1483 aaKnown RBP17.84■□□□□ 0.45
SRP54-208ENST00000555557 TOP2AP11388 1531 aaKnown RBP17.84■□□□□ 0.45
SRP54-208ENST00000555557 NCAPD3P42695 1498 aa17.83■□□□□ 0.45
SRP54-208ENST00000555557 HMGXB3Q12766 1538 aa17.74■□□□□ 0.43
SRP54-208ENST00000555557 CCDC88BA6NC98 1476 aa17.7■□□□□ 0.42
SRP54-208ENST00000555557 CHIC1Q5VXU3 224 aa17.4■□□□□ 0.38
SRP54-208ENST00000555557 CADPSQ9ULU8 1353 aa17.39■□□□□ 0.37
SRP54-208ENST00000555557 CFTRP13569 1480 aa17.38■□□□□ 0.37
SRP54-208ENST00000555557 NESP48681 1621 aa17.34■□□□□ 0.37
SRP54-208ENST00000555557 ABCC8Q09428 1581 aa17.26■□□□□ 0.35
SRP54-208ENST00000555557 TRIM41Q8WV44 630 aa17.23■□□□□ 0.35
SRP54-208ENST00000555557 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
SRP54-208ENST00000555557 FANCD2Q9BXW9 1451 aa17.19■□□□□ 0.34
SRP54-208ENST00000555557 WRNQ14191 1432 aaPredicted RBP eCLIP17.17■□□□□ 0.34
SRP54-208ENST00000555557 PRDM2Q13029 1718 aa17.15■□□□□ 0.34
SRP54-208ENST00000555557 PDS5BQ9NTI5 1447 aa17.15■□□□□ 0.34
SRP54-208ENST00000555557 SYNJ1O43426 1573 aa17.09■□□□□ 0.33
SRP54-208ENST00000555557 CEP164Q9UPV0 1460 aa17.08■□□□□ 0.33
SRP54-208ENST00000555557 CUX1P39880 1505 aa17.06■□□□□ 0.32
SRP54-208ENST00000555557 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
SRP54-208ENST00000555557 ERCC6Q03468 1493 aa17.01■□□□□ 0.31
SRP54-208ENST00000555557 TOP2BQ02880 1626 aa17■□□□□ 0.31
SRP54-208ENST00000555557 URB2Q14146 1524 aaKnown RBP16.98■□□□□ 0.31
SRP54-208ENST00000555557 FAM9AQ8IZU1 332 aaPredicted RBP16.97■□□□□ 0.31
SRP54-208ENST00000555557 BIVM-ERCC5R4GMW8 1640 aa16.97■□□□□ 0.31
SRP54-208ENST00000555557 TOPBP1Q92547 1522 aa16.96■□□□□ 0.31
SRP54-208ENST00000555557 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
SRP54-208ENST00000555557 MRC2Q9UBG0 1479 aa16.93■□□□□ 0.3
SRP54-208ENST00000555557 FGD5Q6ZNL6 1462 aa16.92■□□□□ 0.3
SRP54-208ENST00000555557 SOGA1O94964 1423 aa16.91■□□□□ 0.3
SRP54-208ENST00000555557 RUSC2Q8N2Y8 1516 aa16.87■□□□□ 0.29
SRP54-208ENST00000555557 POLA1P09884 1462 aaPredicted RBP16.87■□□□□ 0.29
SRP54-208ENST00000555557 CUX2O14529 1486 aa16.86■□□□□ 0.29
SRP54-208ENST00000555557 RAD54L2Q9Y4B4 1467 aa16.85■□□□□ 0.29
SRP54-208ENST00000555557 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
SRP54-208ENST00000555557 WDR62O43379 1518 aa16.83■□□□□ 0.28
SRP54-208ENST00000555557 EHMT2Q96KQ7 1210 aa16.78■□□□□ 0.28
SRP54-208ENST00000555557 LOC105371045A0A1W2PR82 267 aa16.78■□□□□ 0.28
SRP54-208ENST00000555557 CSRNP3Q8WYN3 585 aa16.76■□□□□ 0.27
SRP54-208ENST00000555557 KIF27Q86VH2 1401 aa16.74■□□□□ 0.27
SRP54-208ENST00000555557 EEA1Q15075 1411 aa16.74■□□□□ 0.27
SRP54-208ENST00000555557 ABCA10Q8WWZ4 1543 aa16.73■□□□□ 0.27
SRP54-208ENST00000555557 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
SRP54-208ENST00000555557 TARBP1Q13395 1621 aaKnown RBP16.7■□□□□ 0.26
SRP54-208ENST00000555557 IFT140Q96RY7 1462 aa16.68■□□□□ 0.26
SRP54-208ENST00000555557 IGF1RP08069 1367 aa16.66■□□□□ 0.26
SRP54-208ENST00000555557 ZNF608Q9ULD9 1512 aaPredicted RBP16.66■□□□□ 0.26
SRP54-208ENST00000555557 WDR97A6NE52 1622 aa16.65■□□□□ 0.26
SRP54-208ENST00000555557 AQRO60306 1485 aaKnown RBP eCLIP16.65■□□□□ 0.267e-11■■■■□ 23.2
SRP54-208ENST00000555557 DNAJC5Q9H3Z4 198 aa16.64■□□□□ 0.26
SRP54-208ENST00000555557 GAPVD1Q14C86 1478 aa16.63■□□□□ 0.25
SRP54-208ENST00000555557 ABCA5Q8WWZ7 1642 aa16.59■□□□□ 0.25
SRP54-208ENST00000555557 PRXQ9BXM0 1461 aa16.57■□□□□ 0.24
SRP54-208ENST00000555557 CARMIL1Q5VZK9 1371 aa16.56■□□□□ 0.24
SRP54-208ENST00000555557 RAPGEF2Q9Y4G8 1499 aa16.56■□□□□ 0.24
SRP54-208ENST00000555557 UBTFP17480 764 aaKnown RBP16.55■□□□□ 0.24
SRP54-208ENST00000555557 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
SRP54-208ENST00000555557 GOLGA3Q08378 1498 aa16.52■□□□□ 0.24
SRP54-208ENST00000555557 KIF21BO75037 1637 aa16.52■□□□□ 0.24
SRP54-208ENST00000555557 ERICH3Q5RHP9 1530 aa16.52■□□□□ 0.23
SRP54-208ENST00000555557 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
SRP54-208ENST00000555557 PBRM1Q86U86 1689 aa16.48■□□□□ 0.23
SRP54-208ENST00000555557 SNAPC4Q5SXM2 1469 aa16.45■□□□□ 0.22
SRP54-208ENST00000555557 TNIKQ9UKE5 1360 aa16.45■□□□□ 0.22
SRP54-208ENST00000555557 CUL7Q14999 1698 aa16.45■□□□□ 0.22
SRP54-208ENST00000555557 FHAD1B1AJZ9 1412 aa16.43■□□□□ 0.22
SRP54-208ENST00000555557 RANGAP1P46060 587 aaPredicted RBP16.43■□□□□ 0.22
SRP54-208ENST00000555557 FBLN2P98095 1184 aa16.41■□□□□ 0.22
SRP54-208ENST00000555557 ADAMTS12P58397 1594 aa16.4■□□□□ 0.22
SRP54-208ENST00000555557 CHMP7Q8WUX9 453 aaPredicted RBP16.39■□□□□ 0.21
SRP54-208ENST00000555557 MAGI1Q96QZ7 1491 aaPredicted RBP16.39■□□□□ 0.21
SRP54-208ENST00000555557 CEP162Q5TB80 1403 aa16.35■□□□□ 0.21
SRP54-208ENST00000555557 SYNJ2O15056 1496 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms