RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
SRP54-207ENST00000555535 CHIC1Q5VXU3 224 aa28■■■□□ 2.07
SRP54-207ENST00000555535 SENP3Q9H4L4 574 aaPredicted RBP25.63■■□□□ 1.69
SRP54-207ENST00000555535 PHF23Q9BUL5 403 aaPredicted RBP25.13■■□□□ 1.61
SRP54-207ENST00000555535 FOXD1Q16676 465 aa23.78■■□□□ 1.4
SRP54-207ENST00000555535 MSH5O43196 834 aa22.6■■□□□ 1.21
SRP54-207ENST00000555535 POTEDQ86YR6 584 aa22.59■■□□□ 1.21
SRP54-207ENST00000555535 PLPPR3Q6T4P5 718 aa22.23■■□□□ 1.15
SRP54-207ENST00000555535 PIAS4Q8N2W9 510 aaPredicted RBP22.19■■□□□ 1.14
SRP54-207ENST00000555535 PPP6R1Q9UPN7 881 aa21.85■■□□□ 1.09
SRP54-207ENST00000555535 ADRA2BP18089 450 aa21.78■■□□□ 1.08
SRP54-207ENST00000555535 DMRT2Q9Y5R5 561 aa20.21■□□□□ 0.83
SRP54-207ENST00000555535 SCAF1Q9H7N4 1312 aaKnown RBP20.2■□□□□ 0.82
SRP54-207ENST00000555535 MAPK8IP2Q13387 824 aaPredicted RBP20.1■□□□□ 0.81
SRP54-207ENST00000555535 CACNB1Q02641 598 aaPredicted RBP19.57■□□□□ 0.72
SRP54-207ENST00000555535 DCAF8L1A6NGE4 600 aa19.37■□□□□ 0.69
SRP54-207ENST00000555535 PPP4R3CPQ6ZMV5 832 aa19.35■□□□□ 0.69
SRP54-207ENST00000555535 HOXD11P31277 338 aaPredicted RBP19.31■□□□□ 0.68
SRP54-207ENST00000555535 RNF39Q9H2S5 420 aa19.16■□□□□ 0.66
SRP54-207ENST00000555535 CNKSR2Q8WXI2 1034 aa19.15■□□□□ 0.66
SRP54-207ENST00000555535 RNF216Q9NWF9 866 aaPredicted RBP19.09■□□□□ 0.65
SRP54-207ENST00000555535 C1QBPQ07021 282 aaKnown RBP18.94■□□□□ 0.62
SRP54-207ENST00000555535 DNAJC5BQ9UF47 199 aa18.87■□□□□ 0.61
SRP54-207ENST00000555535 NCBP3Q53F19 620 aaKnown RBP18.63■□□□□ 0.57
SRP54-207ENST00000555535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.42■□□□□ 0.54
SRP54-207ENST00000555535 NPM3O75607 178 aaKnown RBP18.18■□□□□ 0.5
SRP54-207ENST00000555535 U3KPZ7 1027 aaPredicted RBP17.9■□□□□ 0.46
SRP54-207ENST00000555535 CAPN15O75808 1086 aa17.8■□□□□ 0.44
SRP54-207ENST00000555535 DSG3P32926 999 aa17.77■□□□□ 0.44
SRP54-207ENST00000555535 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
SRP54-207ENST00000555535 POTEHQ6S545 545 aa17.67■□□□□ 0.42
SRP54-207ENST00000555535 APLP2Q06481 763 aa17.63■□□□□ 0.41
SRP54-207ENST00000555535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.47■□□□□ 0.39
SRP54-207ENST00000555535 HNRNPUL2Q1KMD3 747 aaKnown RBP17.47■□□□□ 0.39
SRP54-207ENST00000555535 ZNF219Q9P2Y4 722 aaPredicted RBP17.47■□□□□ 0.39
SRP54-207ENST00000555535 SLC4A2P04920 1241 aa17.43■□□□□ 0.38
SRP54-207ENST00000555535 KCNA4P22459 653 aa17.42■□□□□ 0.38
SRP54-207ENST00000555535 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.37
SRP54-207ENST00000555535 SAMD1Q6SPF0 538 aaPredicted RBP17.3■□□□□ 0.36
SRP54-207ENST00000555535 ABCB7O75027 752 aa17.27■□□□□ 0.36
SRP54-207ENST00000555535 RBM42Q9BTD8 480 aaKnown RBP17.13■□□□□ 0.33
SRP54-207ENST00000555535 MYCNP04198 464 aaPredicted RBP16.93■□□□□ 0.3
SRP54-207ENST00000555535 POLA2Q14181 598 aa16.84■□□□□ 0.29
SRP54-207ENST00000555535 CHRDL2Q6WN34 429 aa16.8■□□□□ 0.28
SRP54-207ENST00000555535 ZBTB12Q9Y330 459 aaPredicted RBP16.65■□□□□ 0.26
SRP54-207ENST00000555535 AKT1S1Q96B36 256 aa16.59■□□□□ 0.25
SRP54-207ENST00000555535 FOXD4L1Q9NU39 408 aa16.5■□□□□ 0.23
SRP54-207ENST00000555535 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
SRP54-207ENST00000555535 SP7Q8TDD2 431 aaPredicted RBP16.39■□□□□ 0.21
SRP54-207ENST00000555535 ATF5Q9Y2D1 282 aaPredicted RBP16.38■□□□□ 0.21
SRP54-207ENST00000555535 REM2Q8IYK8 340 aaPredicted RBP16.36■□□□□ 0.21
SRP54-207ENST00000555535 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
SRP54-207ENST00000555535 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
SRP54-207ENST00000555535 PITPNM1O00562 1244 aa16.16■□□□□ 0.18
SRP54-207ENST00000555535 FXR2P51116 673 aaKnown RBP eCLIP16.14■□□□□ 0.17
SRP54-207ENST00000555535 HAX1O00165 279 aa16.13■□□□□ 0.17
SRP54-207ENST00000555535 ATXN8OSP0DMR3 200 aa16.13■□□□□ 0.17
SRP54-207ENST00000555535 SPDYE2BA6NHP3 402 aa16.02■□□□□ 0.16
SRP54-207ENST00000555535 SPDYE6P0CI01 402 aa16.02■□□□□ 0.16
SRP54-207ENST00000555535 SPDYE2Q495Y8 402 aa16.02■□□□□ 0.16
SRP54-207ENST00000555535 FBLN2P98095 1184 aa16.01■□□□□ 0.15
SRP54-207ENST00000555535 ZBTB22O15209 634 aa15.95■□□□□ 0.14
SRP54-207ENST00000555535 SPDYE1Q8NFV5 336 aaPredicted RBP15.85■□□□□ 0.13
SRP54-207ENST00000555535 PRKAR2AP13861 404 aaKnown RBP15.76■□□□□ 0.11
SRP54-207ENST00000555535 CLEC11AQ9Y240 323 aa15.75■□□□□ 0.11
SRP54-207ENST00000555535 EVX2Q03828 476 aa15.73■□□□□ 0.11
SRP54-207ENST00000555535 ZNF692Q9BU19 519 aaPredicted RBP15.72■□□□□ 0.11
SRP54-207ENST00000555535 SSUH2Q9Y2M2 353 aa15.7■□□□□ 0.1
SRP54-207ENST00000555535 C19orf67A6NJJ6 358 aa15.64■□□□□ 0.09
SRP54-207ENST00000555535 MKRN4PQ13434 485 aaPredicted RBP15.64■□□□□ 0.09
SRP54-207ENST00000555535 PRR29P0C7W0 189 aa15.49■□□□□ 0.07
SRP54-207ENST00000555535 GABBR2O75899 941 aa15.48■□□□□ 0.07
SRP54-207ENST00000555535 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
SRP54-207ENST00000555535 CHADLQ6NUI6 762 aa15.41■□□□□ 0.06
SRP54-207ENST00000555535 LHX8Q68G74 356 aa15.37■□□□□ 0.05
SRP54-207ENST00000555535 CLCN6P51797 869 aa15.35■□□□□ 0.05
SRP54-207ENST00000555535 CD44P16070 742 aaKnown RBP15.25■□□□□ 0.03
SRP54-207ENST00000555535 FARP1Q9Y4F1 1045 aaPredicted RBP15.25■□□□□ 0.03
SRP54-207ENST00000555535 STAG3Q9UJ98 1225 aa15.08■□□□□ 0
SRP54-207ENST00000555535 POTEIP0CG38 1075 aa15.07■□□□□ 0
SRP54-207ENST00000555535 DCBLD2Q96PD2 775 aa15.06■□□□□ 0
SRP54-207ENST00000555535 ZNF579Q8NAF0 562 aaKnown RBP15.02■□□□□ -0
SRP54-207ENST00000555535 ZRANB1Q9UGI0 708 aa14.96□□□□□ -0.01
SRP54-207ENST00000555535 CREBZFQ9NS37 354 aa14.92□□□□□ -0.02
SRP54-207ENST00000555535 PAK3O75914 559 aaPredicted RBP14.89□□□□□ -0.03
SRP54-207ENST00000555535 CSRNP3Q8WYN3 585 aa14.89□□□□□ -0.03
SRP54-207ENST00000555535 SPDYE4A6NLX3 237 aa14.8□□□□□ -0.04
SRP54-207ENST00000555535 NPM1P06748 294 aaKnown RBP eCLIP14.8□□□□□ -0.04
SRP54-207ENST00000555535 GALR2O43603 387 aaPredicted RBP14.77□□□□□ -0.05
SRP54-207ENST00000555535 PLSCR2Q9NRY7 297 aa14.67□□□□□ -0.06
SRP54-207ENST00000555535 PHF12Q96QT6 1004 aa14.66□□□□□ -0.06
SRP54-207ENST00000555535 OTUD5Q96G74 571 aa14.64□□□□□ -0.07
SRP54-207ENST00000555535 MNX1P50219 401 aaPredicted RBP14.59□□□□□ -0.07
SRP54-207ENST00000555535 POTEB2H3BUK9 544 aa14.54□□□□□ -0.08
SRP54-207ENST00000555535 ASTLQ6HA08 431 aaPredicted RBP14.53□□□□□ -0.08
SRP54-207ENST00000555535 C7P10643 843 aa14.52□□□□□ -0.09
SRP54-207ENST00000555535 SLC39A7Q92504 469 aa14.52□□□□□ -0.09
SRP54-207ENST00000555535 MAMSTRQ6ZN01 415 aa14.49□□□□□ -0.09
SRP54-207ENST00000555535 PELP1Q8IZL8 1130 aaKnown RBP14.49□□□□□ -0.09
SRP54-207ENST00000555535 METRNQ9UJH8 293 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 185.4 ms