RNA–Protein interactions for RNA: ENST00000555358.5

STRN3-207, Transcript of striatin 3, humanhuman

TSL 1 (best)

Gene STRN3, Length 2,208 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
STRN3-207ENST00000555358 NISCHQ9Y2I1 1504 aa51.93■■■■■ 5.9
STRN3-207ENST00000555358 CCDC180Q9P1Z9 1646 aa45.09■■■■■ 4.81
STRN3-207ENST00000555358 ZCCHC6Q5VYS8 1495 aaKnown RBP43.65■■■■■ 4.58
STRN3-207ENST00000555358 DCAF8L2P0C7V8 631 aa43.04■■■■■ 4.48
STRN3-207ENST00000555358 DCAF1Q9Y4B6 1507 aa42.8■■■■■ 4.44
STRN3-207ENST00000555358 SHROOM4Q9ULL8 1493 aa42.76■■■■■ 4.44
STRN3-207ENST00000555358 ABCC9O60706 1549 aa42.69■■■■■ 4.42
STRN3-207ENST00000555358 MYO15BQ96JP2 1530 aa42.18■■■■■ 4.34
STRN3-207ENST00000555358 NACADO15069 1562 aa41.95■■■■■ 4.31
STRN3-207ENST00000555358 SCRIBQ14160 1630 aa41.7■■■■■ 4.27
STRN3-207ENST00000555358 RB1CC1Q8TDY2 1594 aa41.58■■■■■ 4.25
STRN3-207ENST00000555358 SUPT5HO00267 1087 aaKnown RBP41.2■■■■■ 4.19
STRN3-207ENST00000555358 UNC13AQ9UPW8 1703 aa40.92■■■■■ 4.14
STRN3-207ENST00000555358 CECR2Q9BXF3 1484 aa40.47■■■■■ 4.07
STRN3-207ENST00000555358 BICRAQ9NZM4 1560 aa40.44■■■■■ 4.06
STRN3-207ENST00000555358 RSF1Q96T23 1441 aaPredicted RBP40.41■■■■■ 4.06
STRN3-207ENST00000555358 PABPN1Q86U42 306 aaKnown RBP eCLIP40.36■■■■■ 4.05
STRN3-207ENST00000555358 MROH2BQ7Z745 1585 aa40.21■■■■■ 4.03
STRN3-207ENST00000555358 BAZ1AQ9NRL2 1556 aaPredicted RBP40.04■■■■■ 4
STRN3-207ENST00000555358 WIZO95785 1651 aa39.93■■■■□ 3.98
STRN3-207ENST00000555358 SMARCA4P51532 1647 aa39.89■■■■□ 3.98
STRN3-207ENST00000555358 CHIC1Q5VXU3 224 aa39.63■■■■□ 3.93
STRN3-207ENST00000555358 TOP2AP11388 1531 aaKnown RBP39.39■■■■□ 3.9
STRN3-207ENST00000555358 PEG3Q9GZU2 1588 aa39.31■■■■□ 3.88
STRN3-207ENST00000555358 ATAD2BQ9ULI0 1458 aa39.19■■■■□ 3.86
STRN3-207ENST00000555358 EIF4G1Q04637 1599 aaKnown RBP39.17■■■■□ 3.86
STRN3-207ENST00000555358 SMARCA2P51531 1590 aa39.09■■■■□ 3.85
STRN3-207ENST00000555358 CCDC88BA6NC98 1476 aa39.07■■■■□ 3.84
STRN3-207ENST00000555358 BAZ1BQ9UIG0 1483 aaKnown RBP38.97■■■■□ 3.83
STRN3-207ENST00000555358 HRCP23327 699 aa38.91■■■■□ 3.82
STRN3-207ENST00000555358 NCAPD3P42695 1498 aa38.75■■■■□ 3.79
STRN3-207ENST00000555358 HMGXB3Q12766 1538 aa38.7■■■■□ 3.79
STRN3-207ENST00000555358 TRIM41Q8WV44 630 aa38.61■■■■□ 3.77
STRN3-207ENST00000555358 PCGF6Q9BYE7 350 aa38.61■■■■□ 3.77
STRN3-207ENST00000555358 CC2D2AQ9P2K1 1620 aa38.58■■■■□ 3.77
STRN3-207ENST00000555358 ABCC8Q09428 1581 aa38.4■■■■□ 3.74
STRN3-207ENST00000555358 LOC105371045A0A1W2PR82 267 aa38.39■■■■□ 3.74
STRN3-207ENST00000555358 FAM9AQ8IZU1 332 aaPredicted RBP38.07■■■■□ 3.68
STRN3-207ENST00000555358 WRNQ14191 1432 aaPredicted RBP eCLIP38.01■■■■□ 3.672e-6■■□□□ 13.9
STRN3-207ENST00000555358 CFTRP13569 1480 aa37.98■■■■□ 3.67
STRN3-207ENST00000555358 PPARGC1BQ86YN6 1023 aaKnown RBP37.97■■■■□ 3.67
STRN3-207ENST00000555358 SYNJ1O43426 1573 aa37.91■■■■□ 3.66
STRN3-207ENST00000555358 TRIM26Q12899 539 aaPredicted RBP37.88■■■■□ 3.65
STRN3-207ENST00000555358 CADPSQ9ULU8 1353 aa37.82■■■■□ 3.64
STRN3-207ENST00000555358 PRDM2Q13029 1718 aa37.79■■■■□ 3.64
STRN3-207ENST00000555358 DNAJC5BQ9UF47 199 aa37.77■■■■□ 3.64
STRN3-207ENST00000555358 SOGA1O94964 1423 aa37.71■■■■□ 3.63
STRN3-207ENST00000555358 TOP2BQ02880 1626 aa37.65■■■■□ 3.62
STRN3-207ENST00000555358 EHMT2Q96KQ7 1210 aa37.64■■■■□ 3.62
STRN3-207ENST00000555358 BIVM-ERCC5R4GMW8 1640 aa37.6■■■■□ 3.61
STRN3-207ENST00000555358 RUSC2Q8N2Y8 1516 aa37.59■■■■□ 3.61
STRN3-207ENST00000555358 NESP48681 1621 aa37.57■■■■□ 3.61
STRN3-207ENST00000555358 CUX1P39880 1505 aa37.57■■■■□ 3.6
STRN3-207ENST00000555358 FANCD2Q9BXW9 1451 aa37.44■■■■□ 3.58
STRN3-207ENST00000555358 EEA1Q15075 1411 aa37.43■■■■□ 3.58
STRN3-207ENST00000555358 LAMC3Q9Y6N6 1575 aa37.4■■■■□ 3.58
STRN3-207ENST00000555358 CSRNP3Q8WYN3 585 aa37.36■■■■□ 3.57
STRN3-207ENST00000555358 ZEB1P37275 1124 aaPredicted RBP37.18■■■■□ 3.54
STRN3-207ENST00000555358 CEP164Q9UPV0 1460 aa37.15■■■■□ 3.54
STRN3-207ENST00000555358 FGD5Q6ZNL6 1462 aa37.12■■■■□ 3.53
STRN3-207ENST00000555358 PDS5BQ9NTI5 1447 aa37.11■■■■□ 3.53
STRN3-207ENST00000555358 DNMBPQ6XZF7 1577 aa37.09■■■■□ 3.53
STRN3-207ENST00000555358 KIF21AQ7Z4S6 1674 aa37.08■■■■□ 3.53
STRN3-207ENST00000555358 TOPBP1Q92547 1522 aa37.06■■■■□ 3.52
STRN3-207ENST00000555358 GOLGA3Q08378 1498 aa37.03■■■■□ 3.52
STRN3-207ENST00000555358 KIF21BO75037 1637 aa37.02■■■■□ 3.52
STRN3-207ENST00000555358 URB2Q14146 1524 aaKnown RBP36.99■■■■□ 3.51
STRN3-207ENST00000555358 KIF27Q86VH2 1401 aa36.99■■■■□ 3.51
STRN3-207ENST00000555358 UBTFP17480 764 aaKnown RBP36.96■■■■□ 3.51
STRN3-207ENST00000555358 TNIKQ9UKE5 1360 aa36.95■■■■□ 3.5
STRN3-207ENST00000555358 CUX2O14529 1486 aa36.92■■■■□ 3.5
STRN3-207ENST00000555358 POLA1P09884 1462 aaPredicted RBP36.91■■■■□ 3.5
STRN3-207ENST00000555358 RAPGEF2Q9Y4G8 1499 aa36.9■■■■□ 3.5
STRN3-207ENST00000555358 RAD54L2Q9Y4B4 1467 aa36.86■■■■□ 3.49
STRN3-207ENST00000555358 CEP162Q5TB80 1403 aa36.83■■■■□ 3.49
STRN3-207ENST00000555358 PRXQ9BXM0 1461 aa36.81■■■■□ 3.48
STRN3-207ENST00000555358 ABCA10Q8WWZ4 1543 aa36.73■■■■□ 3.47
STRN3-207ENST00000555358 ERICH3Q5RHP9 1530 aa36.71■■■■□ 3.47
STRN3-207ENST00000555358 IGF1RP08069 1367 aa36.7■■■■□ 3.47
STRN3-207ENST00000555358 MRC2Q9UBG0 1479 aa36.64■■■■□ 3.46
STRN3-207ENST00000555358 WDR97A6NE52 1622 aa36.62■■■■□ 3.45
STRN3-207ENST00000555358 ERCC6Q03468 1493 aa36.51■■■■□ 3.43
STRN3-207ENST00000555358 CARMIL1Q5VZK9 1371 aa36.5■■■■□ 3.43
STRN3-207ENST00000555358 CLIP1P30622 1438 aa36.49■■■■□ 3.43
STRN3-207ENST00000555358 TARBP1Q13395 1621 aaKnown RBP36.49■■■■□ 3.43
STRN3-207ENST00000555358 TDRD9Q8NDG6 1382 aaKnown RBP36.48■■■■□ 3.43
STRN3-207ENST00000555358 RANGAP1P46060 587 aaPredicted RBP36.47■■■■□ 3.43
STRN3-207ENST00000555358 WDR62O43379 1518 aa36.44■■■■□ 3.42
STRN3-207ENST00000555358 ABCA5Q8WWZ7 1642 aa36.44■■■■□ 3.42
STRN3-207ENST00000555358 GAPVD1Q14C86 1478 aa36.36■■■■□ 3.41
STRN3-207ENST00000555358 THOC2Q8NI27 1593 aaKnown RBP36.34■■■■□ 3.41
STRN3-207ENST00000555358 CUL7Q14999 1698 aa36.31■■■■□ 3.4
STRN3-207ENST00000555358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.24■■■■□ 3.39
STRN3-207ENST00000555358 AQRO60306 1485 aaKnown RBP eCLIP36.22■■■■□ 3.392e-7■■■■□ 26.1
STRN3-207ENST00000555358 IFT140Q96RY7 1462 aa36.2■■■■□ 3.39
STRN3-207ENST00000555358 VPS8Q8N3P4 1428 aa36.17■■■■□ 3.38
STRN3-207ENST00000555358 PBRM1Q86U86 1689 aa36.16■■■■□ 3.38
STRN3-207ENST00000555358 ZNF608Q9ULD9 1512 aaPredicted RBP36.16■■■■□ 3.38
STRN3-207ENST00000555358 CCER1Q8TC90 406 aaPredicted RBP36.15■■■■□ 3.38
STRN3-207ENST00000555358 ARAP1Q96P48 1450 aa36.13■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms