RNA–Protein interactions for RNA: ENST00000555244.1

CPSF2-204, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 3

Gene CPSF2, Length 806 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-204ENST00000555244 AEBP2Q6ZN18 517 aaPredicted RBP17.78■□□□□ 0.44
CPSF2-204ENST00000555244 CHIC1Q5VXU3 224 aa17.03■□□□□ 0.32
CPSF2-204ENST00000555244 SENP3Q9H4L4 574 aaPredicted RBP15.1■□□□□ 0.01
CPSF2-204ENST00000555244 PHF23Q9BUL5 403 aaPredicted RBP14.97□□□□□ -0.01
CPSF2-204ENST00000555244 FOXD1Q16676 465 aa14.09□□□□□ -0.15
CPSF2-204ENST00000555244 PLPPR3Q6T4P5 718 aa13.7□□□□□ -0.22
CPSF2-204ENST00000555244 ADRA2BP18089 450 aa13.33□□□□□ -0.28
CPSF2-204ENST00000555244 PPP6R1Q9UPN7 881 aa13.33□□□□□ -0.28
CPSF2-204ENST00000555244 PIAS4Q8N2W9 510 aaPredicted RBP13.24□□□□□ -0.29
CPSF2-204ENST00000555244 MSH5O43196 834 aa13.08□□□□□ -0.32
CPSF2-204ENST00000555244 POTEDQ86YR6 584 aa12.57□□□□□ -0.4
CPSF2-204ENST00000555244 MAPK8IP2Q13387 824 aaPredicted RBP12.19□□□□□ -0.46
CPSF2-204ENST00000555244 SCAF1Q9H7N4 1312 aaKnown RBP12.14□□□□□ -0.47
CPSF2-204ENST00000555244 PPP4R3CPQ6ZMV5 832 aa12.06□□□□□ -0.48
CPSF2-204ENST00000555244 DMRT2Q9Y5R5 561 aa12□□□□□ -0.49
CPSF2-204ENST00000555244 CNKSR2Q8WXI2 1034 aa11.76□□□□□ -0.53
CPSF2-204ENST00000555244 DCAF8L1A6NGE4 600 aa11.63□□□□□ -0.55
CPSF2-204ENST00000555244 NCBP3Q53F19 620 aaKnown RBP11.63□□□□□ -0.55
CPSF2-204ENST00000555244 HOXD11P31277 338 aaPredicted RBP11.61□□□□□ -0.55
CPSF2-204ENST00000555244 RNF216Q9NWF9 866 aaPredicted RBP11.59□□□□□ -0.55
CPSF2-204ENST00000555244 NPM3O75607 178 aaKnown RBP11.47□□□□□ -0.57
CPSF2-204ENST00000555244 KCNA4P22459 653 aa11.44□□□□□ -0.58
CPSF2-204ENST00000555244 CACNB1Q02641 598 aaPredicted RBP11.18□□□□□ -0.62
CPSF2-204ENST00000555244 RNF39Q9H2S5 420 aa11.18□□□□□ -0.62
CPSF2-204ENST00000555244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.15□□□□□ -0.62
CPSF2-204ENST00000555244 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
CPSF2-204ENST00000555244 C1QBPQ07021 282 aaKnown RBP11.01□□□□□ -0.65
CPSF2-204ENST00000555244 SLC4A1APQ9BWU0 796 aaKnown RBP10.92□□□□□ -0.66
CPSF2-204ENST00000555244 SLC4A2P04920 1241 aa10.9□□□□□ -0.66
CPSF2-204ENST00000555244 U3KPZ7 1027 aaPredicted RBP10.9□□□□□ -0.66
CPSF2-204ENST00000555244 EHMT2Q96KQ7 1210 aa10.86□□□□□ -0.67
CPSF2-204ENST00000555244 SPINK5Q9NQ38 1064 aaPredicted RBP10.73□□□□□ -0.69
CPSF2-204ENST00000555244 CAPN15O75808 1086 aa10.72□□□□□ -0.69
CPSF2-204ENST00000555244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.62□□□□□ -0.71
CPSF2-204ENST00000555244 HNRNPUL2Q1KMD3 747 aaKnown RBP10.62□□□□□ -0.71
CPSF2-204ENST00000555244 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
CPSF2-204ENST00000555244 CSRNP3Q8WYN3 585 aa10.6□□□□□ -0.71
CPSF2-204ENST00000555244 MYCNP04198 464 aaPredicted RBP10.59□□□□□ -0.71
CPSF2-204ENST00000555244 APLP2Q06481 763 aa10.58□□□□□ -0.72
CPSF2-204ENST00000555244 FOXD4L1Q9NU39 408 aa10.58□□□□□ -0.72
CPSF2-204ENST00000555244 SAMD1Q6SPF0 538 aaPredicted RBP10.57□□□□□ -0.72
CPSF2-204ENST00000555244 DSG3P32926 999 aa10.55□□□□□ -0.72
CPSF2-204ENST00000555244 ZBTB22O15209 634 aa10.51□□□□□ -0.73
CPSF2-204ENST00000555244 ABCB7O75027 752 aa10.51□□□□□ -0.73
CPSF2-204ENST00000555244 ZNF219Q9P2Y4 722 aaPredicted RBP10.51□□□□□ -0.73
CPSF2-204ENST00000555244 ATF5Q9Y2D1 282 aaPredicted RBP10.38□□□□□ -0.75
CPSF2-204ENST00000555244 POLA2Q14181 598 aa10.33□□□□□ -0.76
CPSF2-204ENST00000555244 ATXN8OSP0DMR3 200 aa10.19□□□□□ -0.78
CPSF2-204ENST00000555244 NISCHQ9Y2I1 1504 aa10.17□□□□□ -0.78
CPSF2-204ENST00000555244 ZBTB12Q9Y330 459 aaPredicted RBP10.06□□□□□ -0.8
CPSF2-204ENST00000555244 RBM42Q9BTD8 480 aaKnown RBP10.04□□□□□ -0.8
CPSF2-204ENST00000555244 OSCARQ8IYS5 282 aa9.99□□□□□ -0.81
CPSF2-204ENST00000555244 FBLN2P98095 1184 aa9.94□□□□□ -0.82
CPSF2-204ENST00000555244 MKRN4PQ13434 485 aaPredicted RBP9.88□□□□□ -0.83
CPSF2-204ENST00000555244 POTEHQ6S545 545 aa9.86□□□□□ -0.83
CPSF2-204ENST00000555244 AKT1S1Q96B36 256 aa9.85□□□□□ -0.83
CPSF2-204ENST00000555244 REM2Q8IYK8 340 aaPredicted RBP9.79□□□□□ -0.84
CPSF2-204ENST00000555244 SPDYE2BA6NHP3 402 aa9.78□□□□□ -0.84
CPSF2-204ENST00000555244 SPDYE6P0CI01 402 aa9.78□□□□□ -0.84
CPSF2-204ENST00000555244 SPDYE2Q495Y8 402 aa9.78□□□□□ -0.84
CPSF2-204ENST00000555244 CHRDL2Q6WN34 429 aa9.78□□□□□ -0.84
CPSF2-204ENST00000555244 ZNF692Q9BU19 519 aaPredicted RBP9.75□□□□□ -0.85
CPSF2-204ENST00000555244 PITPNM1O00562 1244 aa9.69□□□□□ -0.86
CPSF2-204ENST00000555244 SSUH2Q9Y2M2 353 aa9.65□□□□□ -0.86
CPSF2-204ENST00000555244 CLEC11AQ9Y240 323 aa9.64□□□□□ -0.87
CPSF2-204ENST00000555244 FKBP8Q14318 412 aa9.61□□□□□ -0.87
CPSF2-204ENST00000555244 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
CPSF2-204ENST00000555244 PIP4P2Q8N4L2 257 aa9.59□□□□□ -0.87
CPSF2-204ENST00000555244 SPDYE1Q8NFV5 336 aaPredicted RBP9.58□□□□□ -0.88
CPSF2-204ENST00000555244 SPDYE4A6NLX3 237 aa9.53□□□□□ -0.88
CPSF2-204ENST00000555244 FXR2P51116 673 aaKnown RBP eCLIP9.53□□□□□ -0.883e-7■■■□□ 17.9
CPSF2-204ENST00000555244 PRR29P0C7W0 189 aa9.47□□□□□ -0.89
CPSF2-204ENST00000555244 PRKAR2AP13861 404 aaKnown RBP9.46□□□□□ -0.9
CPSF2-204ENST00000555244 CHADLQ6NUI6 762 aa9.43□□□□□ -0.9
CPSF2-204ENST00000555244 HAX1O00165 279 aa9.42□□□□□ -0.9
CPSF2-204ENST00000555244 STAG3Q9UJ98 1225 aa9.33□□□□□ -0.92
CPSF2-204ENST00000555244 EVX2Q03828 476 aa9.3□□□□□ -0.92
CPSF2-204ENST00000555244 SP7Q8TDD2 431 aaPredicted RBP9.3□□□□□ -0.92
CPSF2-204ENST00000555244 FBXO3Q9UK99 471 aa9.27□□□□□ -0.93
CPSF2-204ENST00000555244 FARP1Q9Y4F1 1045 aaPredicted RBP9.25□□□□□ -0.93
CPSF2-204ENST00000555244 CREBZFQ9NS37 354 aa9.24□□□□□ -0.93
CPSF2-204ENST00000555244 PROM2Q8N271 834 aa9.23□□□□□ -0.93
CPSF2-204ENST00000555244 C19orf67A6NJJ6 358 aa9.22□□□□□ -0.93
CPSF2-204ENST00000555244 AMER1Q5JTC6 1135 aaPredicted RBP9.22□□□□□ -0.93
CPSF2-204ENST00000555244 CD44P16070 742 aaKnown RBP9.17□□□□□ -0.94
CPSF2-204ENST00000555244 RTN4Q9NQC3 1192 aaKnown RBP9.11□□□□□ -0.95
CPSF2-204ENST00000555244 MIER1Q8N108 512 aa9.1□□□□□ -0.95
CPSF2-204ENST00000555244 ZRANB1Q9UGI0 708 aa9.09□□□□□ -0.95
CPSF2-204ENST00000555244 GABBR2O75899 941 aa9.08□□□□□ -0.96
CPSF2-204ENST00000555244 NPM1P06748 294 aaKnown RBP eCLIP9.08□□□□□ -0.96
CPSF2-204ENST00000555244 MNX1P50219 401 aaPredicted RBP9.08□□□□□ -0.96
CPSF2-204ENST00000555244 VASPP50552 380 aaPredicted RBP9.07□□□□□ -0.96
CPSF2-204ENST00000555244 CCDC180Q9P1Z9 1646 aa9.05□□□□□ -0.96
CPSF2-204ENST00000555244 PLEKHG5O94827 1062 aa9.05□□□□□ -0.96
CPSF2-204ENST00000555244 PLCD3Q8N3E9 789 aa9.05□□□□□ -0.96
CPSF2-204ENST00000555244 PAK3O75914 559 aaPredicted RBP9.03□□□□□ -0.96
CPSF2-204ENST00000555244 TSPYL2Q9H2G4 693 aaPredicted RBP8.99□□□□□ -0.97
CPSF2-204ENST00000555244 ZNF579Q8NAF0 562 aaKnown RBP8.98□□□□□ -0.97
CPSF2-204ENST00000555244 PHF12Q96QT6 1004 aa8.98□□□□□ -0.97
CPSF2-204ENST00000555244 IFNLR1Q8IU57 520 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms