RNA–Protein interactions for RNA: ENST00000555235.1

MARK3-209, Transcript of microtubule affinity regulating kinase 3, humanhuman

TSL 2

Gene MARK3, Length 2,282 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MARK3-209ENST00000555235 NISCHQ9Y2I1 1504 aa32.25■■■□□ 2.75
MARK3-209ENST00000555235 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
MARK3-209ENST00000555235 ZCCHC6Q5VYS8 1495 aaKnown RBP27.34■■□□□ 1.97
MARK3-209ENST00000555235 CCDC180Q9P1Z9 1646 aa27.32■■□□□ 1.96
MARK3-209ENST00000555235 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
MARK3-209ENST00000555235 HRCP23327 699 aa26.78■■□□□ 1.88
MARK3-209ENST00000555235 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
MARK3-209ENST00000555235 MYO15BQ96JP2 1530 aa26.53■■□□□ 1.84
MARK3-209ENST00000555235 DCAF1Q9Y4B6 1507 aa26.52■■□□□ 1.84
MARK3-209ENST00000555235 DCAF8L2P0C7V8 631 aa26.51■■□□□ 1.83
MARK3-209ENST00000555235 PCGF6Q9BYE7 350 aa26.26■■□□□ 1.79
MARK3-209ENST00000555235 ABCC9O60706 1549 aa26.15■■□□□ 1.78
MARK3-209ENST00000555235 PPARGC1BQ86YN6 1023 aaKnown RBP25.99■■□□□ 1.75
MARK3-209ENST00000555235 LOC105371045A0A1W2PR82 267 aa25.75■■□□□ 1.71
MARK3-209ENST00000555235 TRIM26Q12899 539 aaPredicted RBP25.68■■□□□ 1.7
MARK3-209ENST00000555235 RSF1Q96T23 1441 aaPredicted RBP25.61■■□□□ 1.69
MARK3-209ENST00000555235 SCRIBQ14160 1630 aa25.58■■□□□ 1.69
MARK3-209ENST00000555235 PELP1Q8IZL8 1130 aaKnown RBP25.54■■□□□ 1.68
MARK3-209ENST00000555235 ZEB1P37275 1124 aaPredicted RBP25.5■■□□□ 1.67
MARK3-209ENST00000555235 RB1CC1Q8TDY2 1594 aa25.37■■□□□ 1.65
MARK3-209ENST00000555235 NACADO15069 1562 aa25.29■■□□□ 1.64
MARK3-209ENST00000555235 TRIM41Q8WV44 630 aa25.29■■□□□ 1.64
MARK3-209ENST00000555235 CECR2Q9BXF3 1484 aa25.11■■□□□ 1.61
MARK3-209ENST00000555235 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
MARK3-209ENST00000555235 SCAF1Q9H7N4 1312 aaKnown RBP25.04■■□□□ 1.6
MARK3-209ENST00000555235 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
MARK3-209ENST00000555235 WIZO95785 1651 aa24.93■■□□□ 1.58
MARK3-209ENST00000555235 BAZ1AQ9NRL2 1556 aaPredicted RBP24.83■■□□□ 1.57
MARK3-209ENST00000555235 EIF4G1Q04637 1599 aaKnown RBP24.77■■□□□ 1.56
MARK3-209ENST00000555235 EHMT2Q96KQ7 1210 aa24.75■■□□□ 1.55
MARK3-209ENST00000555235 ACIN1Q9UKV3 1341 aaKnown RBP24.64■■□□□ 1.54
MARK3-209ENST00000555235 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
MARK3-209ENST00000555235 UNC13AQ9UPW8 1703 aa24.58■■□□□ 1.52
MARK3-209ENST00000555235 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.52
MARK3-209ENST00000555235 MYT1Q01538 1121 aa24.54■■□□□ 1.52
MARK3-209ENST00000555235 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
MARK3-209ENST00000555235 NEUROD1Q13562 356 aa24.49■■□□□ 1.51
MARK3-209ENST00000555235 CCER1Q8TC90 406 aaPredicted RBP24.48■■□□□ 1.51
MARK3-209ENST00000555235 CCDC88BA6NC98 1476 aa24.47■■□□□ 1.51
MARK3-209ENST00000555235 CENPBP07199 599 aaPredicted RBP24.46■■□□□ 1.51
MARK3-209ENST00000555235 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
MARK3-209ENST00000555235 ABCC8Q09428 1581 aa24.44■■□□□ 1.5
MARK3-209ENST00000555235 BICRAQ9NZM4 1560 aa24.44■■□□□ 1.5
MARK3-209ENST00000555235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.44■■□□□ 1.5
MARK3-209ENST00000555235 WRNQ14191 1432 aaPredicted RBP eCLIP24.39■■□□□ 1.49
MARK3-209ENST00000555235 DIEXFQ68CQ4 756 aaKnown RBP24.38■■□□□ 1.49
MARK3-209ENST00000555235 GTF3C3Q9Y5Q9 886 aa24.33■■□□□ 1.49
MARK3-209ENST00000555235 CEP162Q5TB80 1403 aa24.29■■□□□ 1.48
MARK3-209ENST00000555235 SOGA1O94964 1423 aa24.28■■□□□ 1.48
MARK3-209ENST00000555235 TNIKQ9UKE5 1360 aa24.27■■□□□ 1.48
MARK3-209ENST00000555235 EEA1Q15075 1411 aa24.25■■□□□ 1.47
MARK3-209ENST00000555235 CSRNP3Q8WYN3 585 aa24.17■■□□□ 1.46
MARK3-209ENST00000555235 RUSC2Q8N2Y8 1516 aa24.14■■□□□ 1.46
MARK3-209ENST00000555235 GOLGA3Q08378 1498 aa24.07■■□□□ 1.44
MARK3-209ENST00000555235 PEG3Q9GZU2 1588 aa24.06■■□□□ 1.44
MARK3-209ENST00000555235 ZNF316A6NFI3 1004 aaPredicted RBP24.04■■□□□ 1.44
MARK3-209ENST00000555235 UBTFP17480 764 aaKnown RBP24.03■■□□□ 1.44
MARK3-209ENST00000555235 TTBK1Q5TCY1 1321 aaPredicted RBP24.03■■□□□ 1.44
MARK3-209ENST00000555235 CEP164Q9UPV0 1460 aa23.91■■□□□ 1.42
MARK3-209ENST00000555235 SYNJ1O43426 1573 aa23.9■■□□□ 1.42
MARK3-209ENST00000555235 KIF21BO75037 1637 aa23.9■■□□□ 1.42
MARK3-209ENST00000555235 ATAD2BQ9ULI0 1458 aa23.82■■□□□ 1.4
MARK3-209ENST00000555235 CLIP1P30622 1438 aa23.78■■□□□ 1.4
MARK3-209ENST00000555235 YTHDC1Q96MU7 727 aaKnown RBP23.77■■□□□ 1.4
MARK3-209ENST00000555235 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
MARK3-209ENST00000555235 VPS8Q8N3P4 1428 aa23.73■■□□□ 1.39
MARK3-209ENST00000555235 MIER1Q8N108 512 aa23.72■■□□□ 1.39
MARK3-209ENST00000555235 RAPGEF2Q9Y4G8 1499 aa23.68■■□□□ 1.38
MARK3-209ENST00000555235 HNRNPUL2Q1KMD3 747 aaKnown RBP23.63■■□□□ 1.37
MARK3-209ENST00000555235 TOP2BQ02880 1626 aa23.61■■□□□ 1.37
MARK3-209ENST00000555235 DNAJC5BQ9UF47 199 aa23.61■■□□□ 1.37
MARK3-209ENST00000555235 CLSPNQ9HAW4 1339 aa23.59■■□□□ 1.37
MARK3-209ENST00000555235 CC2D2AQ9P2K1 1620 aa23.57■■□□□ 1.36
MARK3-209ENST00000555235 APLP2Q06481 763 aa23.56■■□□□ 1.36
MARK3-209ENST00000555235 BIVM-ERCC5R4GMW8 1640 aa23.53■■□□□ 1.36
MARK3-209ENST00000555235 ERICH3Q5RHP9 1530 aa23.48■■□□□ 1.35
MARK3-209ENST00000555235 PRXQ9BXM0 1461 aa23.47■■□□□ 1.35
MARK3-209ENST00000555235 RANGAP1P46060 587 aaPredicted RBP23.42■■□□□ 1.34
MARK3-209ENST00000555235 ARAP1Q96P48 1450 aa23.4■■□□□ 1.34
MARK3-209ENST00000555235 NCAPD3P42695 1498 aa23.38■■□□□ 1.33
MARK3-209ENST00000555235 HMGXB3Q12766 1538 aa23.34■■□□□ 1.33
MARK3-209ENST00000555235 CUX1P39880 1505 aa23.33■■□□□ 1.32
MARK3-209ENST00000555235 SUPT16HQ9Y5B9 1047 aaKnown RBP23.3■■□□□ 1.32
MARK3-209ENST00000555235 DHX57Q6P158 1386 aaKnown RBP23.3■■□□□ 1.32
MARK3-209ENST00000555235 KANK4Q5T7N3 995 aaPredicted RBP23.27■■□□□ 1.32
MARK3-209ENST00000555235 KIF27Q86VH2 1401 aa23.27■■□□□ 1.32
MARK3-209ENST00000555235 RRBP1Q9P2E9 1410 aaKnown RBP23.24■■□□□ 1.31
MARK3-209ENST00000555235 CFTRP13569 1480 aa23.21■■□□□ 1.31
MARK3-209ENST00000555235 CUX2O14529 1486 aa23.17■■□□□ 1.3
MARK3-209ENST00000555235 ARHGAP35Q9NRY4 1499 aa23.15■■□□□ 1.3
MARK3-209ENST00000555235 TSHZ2Q9NRE2 1034 aa23.09■■□□□ 1.29
MARK3-209ENST00000555235 CCNB3Q8WWL7 1395 aa23.09■■□□□ 1.29
MARK3-209ENST00000555235 ANP32EQ9BTT0 268 aa23.05■■□□□ 1.28
MARK3-209ENST00000555235 PRDM2Q13029 1718 aa23.02■■□□□ 1.27
MARK3-209ENST00000555235 IGF1RP08069 1367 aa23.01■■□□□ 1.27
MARK3-209ENST00000555235 MAP3K1Q13233 1512 aa22.99■■□□□ 1.27
MARK3-209ENST00000555235 TIAM1Q13009 1591 aa22.94■■□□□ 1.26
MARK3-209ENST00000555235 RAB3GAP2Q9H2M9 1393 aa22.9■■□□□ 1.26
MARK3-209ENST00000555235 CARMIL1Q5VZK9 1371 aa22.9■■□□□ 1.26
MARK3-209ENST00000555235 ITGAEP38570 1179 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms