RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
DEPDC4-209ENST00000550587 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
DEPDC4-209ENST00000550587 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
DEPDC4-209ENST00000550587 PHF23Q9BUL5 403 aaPredicted RBP19.15■□□□□ 0.66
DEPDC4-209ENST00000550587 FOXD1Q16676 465 aa18.09■□□□□ 0.49
DEPDC4-209ENST00000550587 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
DEPDC4-209ENST00000550587 POTEDQ86YR6 584 aa17.11■□□□□ 0.33
DEPDC4-209ENST00000550587 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
DEPDC4-209ENST00000550587 ADRA2BP18089 450 aa16.93■□□□□ 0.3
DEPDC4-209ENST00000550587 PIAS4Q8N2W9 510 aaPredicted RBP16.9■□□□□ 0.3
DEPDC4-209ENST00000550587 MSH5O43196 834 aa16.85■□□□□ 0.29
DEPDC4-209ENST00000550587 MAPK8IP2Q13387 824 aaPredicted RBP15.54■□□□□ 0.08
DEPDC4-209ENST00000550587 SCAF1Q9H7N4 1312 aaKnown RBP15.39■□□□□ 0.05
DEPDC4-209ENST00000550587 DMRT2Q9Y5R5 561 aa15.37■□□□□ 0.05
DEPDC4-209ENST00000550587 PPP4R3CPQ6ZMV5 832 aa15.18■□□□□ 0.02
DEPDC4-209ENST00000550587 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
DEPDC4-209ENST00000550587 HOXD11P31277 338 aaPredicted RBP14.81□□□□□ -0.04
DEPDC4-209ENST00000550587 DCAF8L1A6NGE4 600 aa14.78□□□□□ -0.04
DEPDC4-209ENST00000550587 RNF216Q9NWF9 866 aaPredicted RBP14.71□□□□□ -0.05
DEPDC4-209ENST00000550587 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
DEPDC4-209ENST00000550587 CACNB1Q02641 598 aaPredicted RBP14.55□□□□□ -0.08
DEPDC4-209ENST00000550587 NISCHQ9Y2I1 1504 aa14.52□□□□□ -0.08
DEPDC4-209ENST00000550587 NPM3O75607 178 aaKnown RBP14.41□□□□□ -0.1
DEPDC4-209ENST00000550587 RNF39Q9H2S5 420 aa14.4□□□□□ -0.1
DEPDC4-209ENST00000550587 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
DEPDC4-209ENST00000550587 KCNA4P22459 653 aa14.19□□□□□ -0.14
DEPDC4-209ENST00000550587 C1QBPQ07021 282 aaKnown RBP14.17□□□□□ -0.14
DEPDC4-209ENST00000550587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.14□□□□□ -0.15
DEPDC4-209ENST00000550587 U3KPZ7 1027 aaPredicted RBP13.85□□□□□ -0.19
DEPDC4-209ENST00000550587 SLC4A2P04920 1241 aa13.76□□□□□ -0.21
DEPDC4-209ENST00000550587 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
DEPDC4-209ENST00000550587 CAPN15O75808 1086 aa13.63□□□□□ -0.23
DEPDC4-209ENST00000550587 DSG3P32926 999 aa13.52□□□□□ -0.25
DEPDC4-209ENST00000550587 TRHP20396 242 aaPredicted RBP13.43□□□□□ -0.26
DEPDC4-209ENST00000550587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 APLP2Q06481 763 aa13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 HNRNPUL2Q1KMD3 747 aaKnown RBP13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 SLC4A1APQ9BWU0 796 aaKnown RBP13.37□□□□□ -0.27
DEPDC4-209ENST00000550587 ABCB7O75027 752 aa13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 POTEHQ6S545 545 aa13.3□□□□□ -0.28
DEPDC4-209ENST00000550587 MYCNP04198 464 aaPredicted RBP13.29□□□□□ -0.28
DEPDC4-209ENST00000550587 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
DEPDC4-209ENST00000550587 ABCC9O60706 1549 aa13.17□□□□□ -0.3
DEPDC4-209ENST00000550587 CCDC180Q9P1Z9 1646 aa13.07□□□□□ -0.32
DEPDC4-209ENST00000550587 POLA2Q14181 598 aa13.06□□□□□ -0.32
DEPDC4-209ENST00000550587 ZBTB22O15209 634 aa13.05□□□□□ -0.32
DEPDC4-209ENST00000550587 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
DEPDC4-209ENST00000550587 RBM42Q9BTD8 480 aaKnown RBP12.85□□□□□ -0.35
DEPDC4-209ENST00000550587 ATXN8OSP0DMR3 200 aa12.73□□□□□ -0.37
DEPDC4-209ENST00000550587 ZBTB12Q9Y330 459 aaPredicted RBP12.72□□□□□ -0.37
DEPDC4-209ENST00000550587 OSCARQ8IYS5 282 aa12.65□□□□□ -0.38
DEPDC4-209ENST00000550587 CHRDL2Q6WN34 429 aa12.59□□□□□ -0.39
DEPDC4-209ENST00000550587 AKT1S1Q96B36 256 aa12.59□□□□□ -0.39
DEPDC4-209ENST00000550587 RB1CC1Q8TDY2 1594 aa12.53□□□□□ -0.4
DEPDC4-209ENST00000550587 REM2Q8IYK8 340 aaPredicted RBP12.5□□□□□ -0.41
DEPDC4-209ENST00000550587 CSRNP3Q8WYN3 585 aa12.48□□□□□ -0.41
DEPDC4-209ENST00000550587 FBLN2P98095 1184 aa12.47□□□□□ -0.41
DEPDC4-209ENST00000550587 DCAF8L2P0C7V8 631 aa12.46□□□□□ -0.41
DEPDC4-209ENST00000550587 MKRN4PQ13434 485 aaPredicted RBP12.43□□□□□ -0.42
DEPDC4-209ENST00000550587 NACADO15069 1562 aa12.42□□□□□ -0.42
DEPDC4-209ENST00000550587 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 EHMT2Q96KQ7 1210 aa12.35□□□□□ -0.43
DEPDC4-209ENST00000550587 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
DEPDC4-209ENST00000550587 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
DEPDC4-209ENST00000550587 SP7Q8TDD2 431 aaPredicted RBP12.26□□□□□ -0.45
DEPDC4-209ENST00000550587 ZNF692Q9BU19 519 aaPredicted RBP12.26□□□□□ -0.45
DEPDC4-209ENST00000550587 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
DEPDC4-209ENST00000550587 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
DEPDC4-209ENST00000550587 DNAJC5Q9H3Z4 198 aa12.19□□□□□ -0.46
DEPDC4-209ENST00000550587 MYO15BQ96JP2 1530 aa12.19□□□□□ -0.46
DEPDC4-209ENST00000550587 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
DEPDC4-209ENST00000550587 UNC13AQ9UPW8 1703 aa12.14□□□□□ -0.47
DEPDC4-209ENST00000550587 SPDYE1Q8NFV5 336 aaPredicted RBP12.14□□□□□ -0.47
DEPDC4-209ENST00000550587 HAX1O00165 279 aa12.08□□□□□ -0.48
DEPDC4-209ENST00000550587 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
DEPDC4-209ENST00000550587 PRKAR2AP13861 404 aaKnown RBP12.05□□□□□ -0.48
DEPDC4-209ENST00000550587 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
DEPDC4-209ENST00000550587 EVX2Q03828 476 aa11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 ZCCHC6Q5VYS8 1495 aaKnown RBP11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 SHROOM4Q9ULL8 1493 aa11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 CHADLQ6NUI6 762 aa11.96□□□□□ -0.49
DEPDC4-209ENST00000550587 PRR29P0C7W0 189 aa11.95□□□□□ -0.5
DEPDC4-209ENST00000550587 SCRIBQ14160 1630 aa11.89□□□□□ -0.51
DEPDC4-209ENST00000550587 CECR2Q9BXF3 1484 aa11.89□□□□□ -0.51
DEPDC4-209ENST00000550587 CC2D2AQ9P2K1 1620 aa11.87□□□□□ -0.51
DEPDC4-209ENST00000550587 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
DEPDC4-209ENST00000550587 SPDYE4A6NLX3 237 aa11.84□□□□□ -0.51
DEPDC4-209ENST00000550587 EIF4G1Q04637 1599 aaKnown RBP11.83□□□□□ -0.52
DEPDC4-209ENST00000550587 FARP1Q9Y4F1 1045 aaPredicted RBP11.74□□□□□ -0.53
DEPDC4-209ENST00000550587 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.53
DEPDC4-209ENST00000550587 GABBR2O75899 941 aa11.68□□□□□ -0.54
DEPDC4-209ENST00000550587 CREBZFQ9NS37 354 aa11.68□□□□□ -0.54
DEPDC4-209ENST00000550587 CD44P16070 742 aaKnown RBP11.66□□□□□ -0.54
DEPDC4-209ENST00000550587 PROM2Q8N271 834 aa11.53□□□□□ -0.56
DEPDC4-209ENST00000550587 ZRANB1Q9UGI0 708 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms