RNA–Protein interactions for RNA: ENST00000550376.5

PRDM4-205, Transcript of PR/SET domain 4, humanhuman

TSL 1 (best)

Gene PRDM4, Length 2,591 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM4-205ENST00000550376 NISCHQ9Y2I1 1504 aa45.84■■■■■ 4.93
PRDM4-205ENST00000550376 CCDC180Q9P1Z9 1646 aa39.31■■■■□ 3.88
PRDM4-205ENST00000550376 ZCCHC6Q5VYS8 1495 aaKnown RBP38.54■■■■□ 3.76
PRDM4-205ENST00000550376 SHROOM4Q9ULL8 1493 aa38.53■■■■□ 3.76
PRDM4-205ENST00000550376 DCAF8L2P0C7V8 631 aa38.52■■■■□ 3.76
PRDM4-205ENST00000550376 DCAF1Q9Y4B6 1507 aa37.53■■■■□ 3.6
PRDM4-205ENST00000550376 ABCC9O60706 1549 aa37.46■■■■□ 3.59
PRDM4-205ENST00000550376 SUPT5HO00267 1087 aaKnown RBP37.34■■■■□ 3.57
PRDM4-205ENST00000550376 SCRIBQ14160 1630 aa36.82■■■■□ 3.49
PRDM4-205ENST00000550376 MYO15BQ96JP2 1530 aa36.79■■■■□ 3.48
PRDM4-205ENST00000550376 NACADO15069 1562 aa36.64■■■■□ 3.46
PRDM4-205ENST00000550376 RB1CC1Q8TDY2 1594 aa36.27■■■■□ 3.4
PRDM4-205ENST00000550376 RSF1Q96T23 1441 aaPredicted RBP35.94■■■■□ 3.34
PRDM4-205ENST00000550376 CECR2Q9BXF3 1484 aa35.9■■■■□ 3.34
PRDM4-205ENST00000550376 CHIC1Q5VXU3 224 aa35.76■■■■□ 3.32
PRDM4-205ENST00000550376 PABPN1Q86U42 306 aaKnown RBP eCLIP35.71■■■■□ 3.31
PRDM4-205ENST00000550376 UNC13AQ9UPW8 1703 aa35.66■■■■□ 3.3
PRDM4-205ENST00000550376 MROH2BQ7Z745 1585 aa35.63■■■■□ 3.29
PRDM4-205ENST00000550376 WIZO95785 1651 aa35.36■■■■□ 3.25
PRDM4-205ENST00000550376 BICRAQ9NZM4 1560 aa35.34■■■■□ 3.25
PRDM4-205ENST00000550376 BAZ1AQ9NRL2 1556 aaPredicted RBP35.25■■■■□ 3.23
PRDM4-205ENST00000550376 SMARCA4P51532 1647 aa35.08■■■■□ 3.21
PRDM4-205ENST00000550376 TRIM41Q8WV44 630 aa34.8■■■■□ 3.16
PRDM4-205ENST00000550376 LOC105371045A0A1W2PR82 267 aa34.75■■■■□ 3.15
PRDM4-205ENST00000550376 TOP2AP11388 1531 aaKnown RBP34.74■■■■□ 3.15
PRDM4-205ENST00000550376 CCDC88BA6NC98 1476 aa34.66■■■■□ 3.14
PRDM4-205ENST00000550376 FAM9AQ8IZU1 332 aaPredicted RBP34.57■■■■□ 3.12
PRDM4-205ENST00000550376 SMARCA2P51531 1590 aa34.54■■■■□ 3.12
PRDM4-205ENST00000550376 ATAD2BQ9ULI0 1458 aa34.48■■■■□ 3.11
PRDM4-205ENST00000550376 PEG3Q9GZU2 1588 aa34.41■■■■□ 3.1
PRDM4-205ENST00000550376 EHMT2Q96KQ7 1210 aa34.37■■■■□ 3.09
PRDM4-205ENST00000550376 EIF4G1Q04637 1599 aaKnown RBP34.35■■■■□ 3.09
PRDM4-205ENST00000550376 BAZ1BQ9UIG0 1483 aaKnown RBP34.32■■■■□ 3.08
PRDM4-205ENST00000550376 ABCC8Q09428 1581 aa34.26■■■■□ 3.07
PRDM4-205ENST00000550376 NCAPD3P42695 1498 aa33.96■■■■□ 3.03
PRDM4-205ENST00000550376 HMGXB3Q12766 1538 aa33.8■■■■□ 3
PRDM4-205ENST00000550376 WRNQ14191 1432 aaPredicted RBP eCLIP33.78■■■■□ 3
PRDM4-205ENST00000550376 SOGA1O94964 1423 aa33.78■■■■□ 3
PRDM4-205ENST00000550376 PCGF6Q9BYE7 350 aa33.69■■■□□ 2.98
PRDM4-205ENST00000550376 RUSC2Q8N2Y8 1516 aa33.68■■■□□ 2.98
PRDM4-205ENST00000550376 CC2D2AQ9P2K1 1620 aa33.65■■■□□ 2.98
PRDM4-205ENST00000550376 SYNJ1O43426 1573 aa33.63■■■□□ 2.97
PRDM4-205ENST00000550376 CSRNP3Q8WYN3 585 aa33.5■■■□□ 2.95
PRDM4-205ENST00000550376 CFTRP13569 1480 aa33.41■■■□□ 2.94
PRDM4-205ENST00000550376 UBTFP17480 764 aaKnown RBP33.32■■■□□ 2.93
PRDM4-205ENST00000550376 DNAJC5BQ9UF47 199 aa33.31■■■□□ 2.92
PRDM4-205ENST00000550376 PPARGC1BQ86YN6 1023 aaKnown RBP33.3■■■□□ 2.92
PRDM4-205ENST00000550376 CADPSQ9ULU8 1353 aa33.28■■■□□ 2.92
PRDM4-205ENST00000550376 EEA1Q15075 1411 aa33.28■■■□□ 2.92
PRDM4-205ENST00000550376 TOP2BQ02880 1626 aa33.25■■■□□ 2.91
PRDM4-205ENST00000550376 CUX1P39880 1505 aa33.22■■■□□ 2.91
PRDM4-205ENST00000550376 TRIM26Q12899 539 aaPredicted RBP33.18■■■□□ 2.9
PRDM4-205ENST00000550376 BIVM-ERCC5R4GMW8 1640 aa33.11■■■□□ 2.89
PRDM4-205ENST00000550376 CEP162Q5TB80 1403 aa33.09■■■□□ 2.89
PRDM4-205ENST00000550376 TNIKQ9UKE5 1360 aa33.09■■■□□ 2.89
PRDM4-205ENST00000550376 NESP48681 1621 aa33.08■■■□□ 2.89
PRDM4-205ENST00000550376 GOLGA3Q08378 1498 aa33.06■■■□□ 2.88
PRDM4-205ENST00000550376 RANGAP1P46060 587 aaPredicted RBP33.04■■■□□ 2.88
PRDM4-205ENST00000550376 CEP164Q9UPV0 1460 aa32.97■■■□□ 2.87
PRDM4-205ENST00000550376 RAPGEF2Q9Y4G8 1499 aa32.97■■■□□ 2.87
PRDM4-205ENST00000550376 TTBK1Q5TCY1 1321 aaPredicted RBP32.96■■■□□ 2.87
PRDM4-205ENST00000550376 FANCD2Q9BXW9 1451 aa32.94■■■□□ 2.86
PRDM4-205ENST00000550376 PRDM2Q13029 1718 aa32.92■■■□□ 2.86
PRDM4-205ENST00000550376 HRCP23327 699 aa32.89■■■□□ 2.86
PRDM4-205ENST00000550376 KIF21BO75037 1637 aa32.86■■■□□ 2.85
PRDM4-205ENST00000550376 KIF27Q86VH2 1401 aa32.81■■■□□ 2.84
PRDM4-205ENST00000550376 FGD5Q6ZNL6 1462 aa32.79■■■□□ 2.84
PRDM4-205ENST00000550376 CUX2O14529 1486 aa32.74■■■□□ 2.83
PRDM4-205ENST00000550376 PRXQ9BXM0 1461 aa32.7■■■□□ 2.83
PRDM4-205ENST00000550376 CLIP1P30622 1438 aa32.7■■■□□ 2.83
PRDM4-205ENST00000550376 RAD54L2Q9Y4B4 1467 aa32.64■■■□□ 2.82
PRDM4-205ENST00000550376 IGF1RP08069 1367 aa32.61■■■□□ 2.81
PRDM4-205ENST00000550376 LAMC3Q9Y6N6 1575 aa32.61■■■□□ 2.81
PRDM4-205ENST00000550376 TOPBP1Q92547 1522 aa32.6■■■□□ 2.81
PRDM4-205ENST00000550376 DNMBPQ6XZF7 1577 aa32.54■■■□□ 2.8
PRDM4-205ENST00000550376 POLA1P09884 1462 aaPredicted RBP32.53■■■□□ 2.8
PRDM4-205ENST00000550376 URB2Q14146 1524 aaKnown RBP32.52■■■□□ 2.8
PRDM4-205ENST00000550376 ERICH3Q5RHP9 1530 aa32.51■■■□□ 2.8
PRDM4-205ENST00000550376 PDS5BQ9NTI5 1447 aa32.5■■■□□ 2.79
PRDM4-205ENST00000550376 CARMIL1Q5VZK9 1371 aa32.44■■■□□ 2.78
PRDM4-205ENST00000550376 KIF21AQ7Z4S6 1674 aa32.39■■■□□ 2.78
PRDM4-205ENST00000550376 VPS8Q8N3P4 1428 aa32.39■■■□□ 2.77
PRDM4-205ENST00000550376 TDRD9Q8NDG6 1382 aaKnown RBP32.35■■■□□ 2.77
PRDM4-205ENST00000550376 ABCA10Q8WWZ4 1543 aa32.34■■■□□ 2.77
PRDM4-205ENST00000550376 APLP2Q06481 763 aa32.29■■■□□ 2.76
PRDM4-205ENST00000550376 ARAP1Q96P48 1450 aa32.27■■■□□ 2.76
PRDM4-205ENST00000550376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.18■■■□□ 2.74
PRDM4-205ENST00000550376 P3H3Q8IVL6 736 aa32.17■■■□□ 2.74
PRDM4-205ENST00000550376 ARHGAP35Q9NRY4 1499 aa32.17■■■□□ 2.74
PRDM4-205ENST00000550376 KANK4Q5T7N3 995 aaPredicted RBP32.1■■■□□ 2.73
PRDM4-205ENST00000550376 GAPVD1Q14C86 1478 aa32.08■■■□□ 2.73
PRDM4-205ENST00000550376 WDR97A6NE52 1622 aa32.05■■■□□ 2.72
PRDM4-205ENST00000550376 MRC2Q9UBG0 1479 aa32.04■■■□□ 2.72
PRDM4-205ENST00000550376 HNRNPUL2Q1KMD3 747 aaKnown RBP32.02■■■□□ 2.72
PRDM4-205ENST00000550376 AQRO60306 1485 aaKnown RBP eCLIP32■■■□□ 2.714e-6■■■■■ 31
PRDM4-205ENST00000550376 TARBP1Q13395 1621 aaKnown RBP31.98■■■□□ 2.71
PRDM4-205ENST00000550376 ABCA5Q8WWZ7 1642 aa31.98■■■□□ 2.71
PRDM4-205ENST00000550376 CCER1Q8TC90 406 aaPredicted RBP31.97■■■□□ 2.71
PRDM4-205ENST00000550376 ERCC6Q03468 1493 aa31.93■■■□□ 2.7
PRDM4-205ENST00000550376 ATP1B4Q9UN42 357 aaPredicted RBP31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms