RNA–Protein interactions for RNA: ENST00000547530.6

BRF1-211, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BRF1, Length 3,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-211ENST00000547530 NISCHQ9Y2I1 1504 aa28.09■■■□□ 2.09
BRF1-211ENST00000547530 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
BRF1-211ENST00000547530 SUPT5HO00267 1087 aaKnown RBP26.33■■□□□ 1.81
BRF1-211ENST00000547530 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
BRF1-211ENST00000547530 PCGF6Q9BYE7 350 aa25.56■■□□□ 1.68
BRF1-211ENST00000547530 PPARGC1BQ86YN6 1023 aaKnown RBP25.43■■□□□ 1.66
BRF1-211ENST00000547530 EHMT2Q96KQ7 1210 aa25.16■■□□□ 1.62
BRF1-211ENST00000547530 HRCP23327 699 aa25.13■■□□□ 1.61
BRF1-211ENST00000547530 LOC105371045A0A1W2PR82 267 aa24.95■■□□□ 1.58
BRF1-211ENST00000547530 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
BRF1-211ENST00000547530 MYO15BQ96JP2 1530 aa24.68■■□□□ 1.54
BRF1-211ENST00000547530 FAM9AQ8IZU1 332 aaPredicted RBP24.65■■□□□ 1.54
BRF1-211ENST00000547530 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.49
BRF1-211ENST00000547530 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
BRF1-211ENST00000547530 TRIM41Q8WV44 630 aa23.95■■□□□ 1.42
BRF1-211ENST00000547530 SCAF1Q9H7N4 1312 aaKnown RBP23.84■■□□□ 1.41
BRF1-211ENST00000547530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.82■■□□□ 1.4
BRF1-211ENST00000547530 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
BRF1-211ENST00000547530 YTHDC1Q96MU7 727 aaKnown RBP23.67■■□□□ 1.38
BRF1-211ENST00000547530 ZCCHC6Q5VYS8 1495 aaKnown RBP23.64■■□□□ 1.38
BRF1-211ENST00000547530 ZEB1P37275 1124 aaPredicted RBP23.6■■□□□ 1.37
BRF1-211ENST00000547530 DCAF1Q9Y4B6 1507 aa23.5■■□□□ 1.35
BRF1-211ENST00000547530 NEUROD1Q13562 356 aa23.45■■□□□ 1.34
BRF1-211ENST00000547530 GTF3C3Q9Y5Q9 886 aa23.44■■□□□ 1.34
BRF1-211ENST00000547530 PELP1Q8IZL8 1130 aaKnown RBP23.43■■□□□ 1.34
BRF1-211ENST00000547530 RANGAP1P46060 587 aaPredicted RBP23.39■■□□□ 1.34
BRF1-211ENST00000547530 DIEXFQ68CQ4 756 aaKnown RBP23.3■■□□□ 1.32
BRF1-211ENST00000547530 ACIN1Q9UKV3 1341 aaKnown RBP23.25■■□□□ 1.31
BRF1-211ENST00000547530 CENPBP07199 599 aaPredicted RBP23.19■■□□□ 1.3
BRF1-211ENST00000547530 HNRNPUL2Q1KMD3 747 aaKnown RBP23.09■■□□□ 1.29
BRF1-211ENST00000547530 UBTFP17480 764 aaKnown RBP23.06■■□□□ 1.28
BRF1-211ENST00000547530 CCDC180Q9P1Z9 1646 aa23■■□□□ 1.27
BRF1-211ENST00000547530 RSF1Q96T23 1441 aaPredicted RBP22.84■■□□□ 1.25
BRF1-211ENST00000547530 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
BRF1-211ENST00000547530 MIER1Q8N108 512 aa22.76■■□□□ 1.23
BRF1-211ENST00000547530 ZNF316A6NFI3 1004 aaPredicted RBP22.69■■□□□ 1.22
BRF1-211ENST00000547530 RB1CC1Q8TDY2 1594 aa22.66■■□□□ 1.22
BRF1-211ENST00000547530 ITGAEP38570 1179 aa22.61■■□□□ 1.21
BRF1-211ENST00000547530 APLP2Q06481 763 aa22.61■■□□□ 1.21
BRF1-211ENST00000547530 BCANQ96GW7 911 aa22.56■■□□□ 1.2
BRF1-211ENST00000547530 CECR2Q9BXF3 1484 aa22.54■■□□□ 1.2
BRF1-211ENST00000547530 ABCC9O60706 1549 aa22.52■■□□□ 1.2
BRF1-211ENST00000547530 CSRNP3Q8WYN3 585 aa22.35■■□□□ 1.17
BRF1-211ENST00000547530 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
BRF1-211ENST00000547530 SOGA1O94964 1423 aa22.28■■□□□ 1.16
BRF1-211ENST00000547530 CEP162Q5TB80 1403 aa22.27■■□□□ 1.16
BRF1-211ENST00000547530 MROH2BQ7Z745 1585 aa22.23■■□□□ 1.15
BRF1-211ENST00000547530 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
BRF1-211ENST00000547530 MYT1Q01538 1121 aa22.22■■□□□ 1.15
BRF1-211ENST00000547530 ATP1B4Q9UN42 357 aaPredicted RBP22.21■■□□□ 1.15
BRF1-211ENST00000547530 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
BRF1-211ENST00000547530 HIRIP3Q9BW71 556 aaPredicted RBP22.18■■□□□ 1.14
BRF1-211ENST00000547530 KCNH8Q96L42 1107 aa22.14■■□□□ 1.13
BRF1-211ENST00000547530 RUSC2Q8N2Y8 1516 aa22.13■■□□□ 1.13
BRF1-211ENST00000547530 WIZO95785 1651 aa22.08■■□□□ 1.13
BRF1-211ENST00000547530 SUPT16HQ9Y5B9 1047 aaKnown RBP22.06■■□□□ 1.12
BRF1-211ENST00000547530 CNGB1Q14028 1251 aaPredicted RBP22■■□□□ 1.11
BRF1-211ENST00000547530 FKBP8Q14318 412 aa21.98■■□□□ 1.11
BRF1-211ENST00000547530 TRIM52Q96A61 297 aa21.96■■□□□ 1.11
BRF1-211ENST00000547530 DDX10Q13206 875 aaKnown RBP21.95■■□□□ 1.1
BRF1-211ENST00000547530 TNIKQ9UKE5 1360 aa21.88■■□□□ 1.09
BRF1-211ENST00000547530 IRX6P78412 446 aaPredicted RBP21.86■■□□□ 1.09
BRF1-211ENST00000547530 TSHZ2Q9NRE2 1034 aa21.85■■□□□ 1.09
BRF1-211ENST00000547530 CLIP1P30622 1438 aa21.83■■□□□ 1.08
BRF1-211ENST00000547530 KANK4Q5T7N3 995 aaPredicted RBP21.83■■□□□ 1.08
BRF1-211ENST00000547530 P3H3Q8IVL6 736 aa21.82■■□□□ 1.08
BRF1-211ENST00000547530 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
BRF1-211ENST00000547530 NEFLP07196 543 aa21.81■■□□□ 1.08
BRF1-211ENST00000547530 SIN3AQ96ST3 1273 aa21.75■■□□□ 1.07
BRF1-211ENST00000547530 SENP3-EIF4A1A0A087X0R7 540 aa21.73■■□□□ 1.07
BRF1-211ENST00000547530 ANP32EQ9BTT0 268 aa21.68■■□□□ 1.06
BRF1-211ENST00000547530 GOLGA3Q08378 1498 aa21.67■■□□□ 1.06
BRF1-211ENST00000547530 WRNQ14191 1432 aaPredicted RBP eCLIP21.66■■□□□ 1.06
BRF1-211ENST00000547530 ERICH6Q7L0X2 663 aa21.65■■□□□ 1.06
BRF1-211ENST00000547530 BCL11AQ9H165 835 aa21.59■■□□□ 1.05
BRF1-211ENST00000547530 DHX57Q6P158 1386 aaKnown RBP21.52■■□□□ 1.04
BRF1-211ENST00000547530 RAPGEF2Q9Y4G8 1499 aa21.51■■□□□ 1.03
BRF1-211ENST00000547530 POLR3GLQ9BT43 218 aa21.51■■□□□ 1.03
BRF1-211ENST00000547530 RBM19Q9Y4C8 960 aaKnown RBP21.49■■□□□ 1.03
BRF1-211ENST00000547530 ANP32CO43423 234 aa21.48■■□□□ 1.03
BRF1-211ENST00000547530 VPS8Q8N3P4 1428 aa21.46■■□□□ 1.03
BRF1-211ENST00000547530 HNRNPUQ00839 825 aaKnown RBP eCLIP21.45■■□□□ 1.02
BRF1-211ENST00000547530 BAZ1AQ9NRL2 1556 aaPredicted RBP21.45■■□□□ 1.02
BRF1-211ENST00000547530 ARID3CA6NKF2 412 aa21.43■■□□□ 1.02
BRF1-211ENST00000547530 CEP164Q9UPV0 1460 aa21.41■■□□□ 1.02
BRF1-211ENST00000547530 EEA1Q15075 1411 aa21.36■■□□□ 1.01
BRF1-211ENST00000547530 NACADO15069 1562 aa21.32■■□□□ 1
BRF1-211ENST00000547530 FAM9BQ8IZU0 186 aa21.32■■□□□ 1
BRF1-211ENST00000547530 SMARCA2P51531 1590 aa21.32■■□□□ 1
BRF1-211ENST00000547530 NBR1Q14596 966 aa21.31■■□□□ 1
BRF1-211ENST00000547530 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
BRF1-211ENST00000547530 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
BRF1-211ENST00000547530 CHIC2Q9UKJ5 165 aa21.27■□□□□ 0.99
BRF1-211ENST00000547530 CDK11AQ9UQ88 783 aaPredicted RBP21.27■□□□□ 0.99
BRF1-211ENST00000547530 CCNB3Q8WWL7 1395 aa21.24■□□□□ 0.99
BRF1-211ENST00000547530 CLSPNQ9HAW4 1339 aa21.21■□□□□ 0.99
BRF1-211ENST00000547530 B4GALNT3Q6L9W6 998 aa21.2■□□□□ 0.99
BRF1-211ENST00000547530 BAZ1BQ9UIG0 1483 aaKnown RBP21.18■□□□□ 0.98
BRF1-211ENST00000547530 ZNF326Q5BKZ1 582 aaKnown RBP21.17■□□□□ 0.98
BRF1-211ENST00000547530 KIF21BO75037 1637 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms