RNA–Protein interactions for RNA: ENST00000546869.1

DDX54-203, Transcript of DEAD-box helicase 54, humanhuman

TSL 3

Gene DDX54, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-203ENST00000546869 NISCHQ9Y2I1 1504 aa34.88■■■■□ 3.17
DDX54-203ENST00000546869 CCDC180Q9P1Z9 1646 aa30.9■■■□□ 2.54
DDX54-203ENST00000546869 ABCC9O60706 1549 aa30.03■■■□□ 2.4
DDX54-203ENST00000546869 ZCCHC6Q5VYS8 1495 aaKnown RBP29.08■■■□□ 2.25
DDX54-203ENST00000546869 NACADO15069 1562 aa29.07■■■□□ 2.24
DDX54-203ENST00000546869 MYO15BQ96JP2 1530 aa29.04■■■□□ 2.24
DDX54-203ENST00000546869 RB1CC1Q8TDY2 1594 aa29.02■■■□□ 2.24
DDX54-203ENST00000546869 DCAF8L2P0C7V8 631 aa29.01■■■□□ 2.23
DDX54-203ENST00000546869 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
DDX54-203ENST00000546869 UNC13AQ9UPW8 1703 aa28.24■■■□□ 2.11
DDX54-203ENST00000546869 BICRAQ9NZM4 1560 aa28.12■■■□□ 2.09
DDX54-203ENST00000546869 PABPN1Q86U42 306 aaKnown RBP eCLIP28.12■■■□□ 2.09
DDX54-203ENST00000546869 SCRIBQ14160 1630 aa28.11■■■□□ 2.09
DDX54-203ENST00000546869 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.07
DDX54-203ENST00000546869 DNAJC5BQ9UF47 199 aa27.48■■□□□ 1.99
DDX54-203ENST00000546869 EIF4G1Q04637 1599 aaKnown RBP27.37■■□□□ 1.97
DDX54-203ENST00000546869 CC2D2AQ9P2K1 1620 aa27.19■■□□□ 1.94
DDX54-203ENST00000546869 CECR2Q9BXF3 1484 aa27.12■■□□□ 1.93
DDX54-203ENST00000546869 BAZ1AQ9NRL2 1556 aaPredicted RBP27.02■■□□□ 1.92
DDX54-203ENST00000546869 SMARCA4P51532 1647 aa26.98■■□□□ 1.91
DDX54-203ENST00000546869 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
DDX54-203ENST00000546869 ATAD2BQ9ULI0 1458 aa26.85■■□□□ 1.89
DDX54-203ENST00000546869 MROH2BQ7Z745 1585 aa26.84■■□□□ 1.89
DDX54-203ENST00000546869 SMARCA2P51531 1590 aa26.82■■□□□ 1.88
DDX54-203ENST00000546869 PEG3Q9GZU2 1588 aa26.8■■□□□ 1.88
DDX54-203ENST00000546869 HMGXB3Q12766 1538 aa26.7■■□□□ 1.86
DDX54-203ENST00000546869 RSF1Q96T23 1441 aaPredicted RBP26.65■■□□□ 1.86
DDX54-203ENST00000546869 BAZ1BQ9UIG0 1483 aaKnown RBP26.6■■□□□ 1.85
DDX54-203ENST00000546869 WIZO95785 1651 aa26.5■■□□□ 1.83
DDX54-203ENST00000546869 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
DDX54-203ENST00000546869 CADPSQ9ULU8 1353 aa26.07■■□□□ 1.76
DDX54-203ENST00000546869 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
DDX54-203ENST00000546869 NESP48681 1621 aa26.03■■□□□ 1.76
DDX54-203ENST00000546869 CCDC88BA6NC98 1476 aa26.01■■□□□ 1.75
DDX54-203ENST00000546869 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
DDX54-203ENST00000546869 CFTRP13569 1480 aa25.95■■□□□ 1.74
DDX54-203ENST00000546869 PDS5BQ9NTI5 1447 aa25.92■■□□□ 1.74
DDX54-203ENST00000546869 ERCC6Q03468 1493 aa25.89■■□□□ 1.73
DDX54-203ENST00000546869 FANCD2Q9BXW9 1451 aa25.71■■□□□ 1.71
DDX54-203ENST00000546869 KIF21AQ7Z4S6 1674 aa25.68■■□□□ 1.7
DDX54-203ENST00000546869 CEP164Q9UPV0 1460 aa25.65■■□□□ 1.7
DDX54-203ENST00000546869 CUX2O14529 1486 aa25.64■■□□□ 1.69
DDX54-203ENST00000546869 PRDM2Q13029 1718 aa25.62■■□□□ 1.69
DDX54-203ENST00000546869 THOC2Q8NI27 1593 aaKnown RBP25.61■■□□□ 1.69
DDX54-203ENST00000546869 MRC2Q9UBG0 1479 aa25.6■■□□□ 1.69
DDX54-203ENST00000546869 WDR62O43379 1518 aa25.51■■□□□ 1.67
DDX54-203ENST00000546869 URB2Q14146 1524 aaKnown RBP25.42■■□□□ 1.66
DDX54-203ENST00000546869 ABCC8Q09428 1581 aa25.4■■□□□ 1.66
DDX54-203ENST00000546869 TOPBP1Q92547 1522 aa25.32■■□□□ 1.64
DDX54-203ENST00000546869 DNMBPQ6XZF7 1577 aa25.3■■□□□ 1.64
DDX54-203ENST00000546869 CUX1P39880 1505 aa25.17■■□□□ 1.62
DDX54-203ENST00000546869 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
DDX54-203ENST00000546869 POLA1P09884 1462 aaPredicted RBP25.11■■□□□ 1.61
DDX54-203ENST00000546869 WRNQ14191 1432 aaPredicted RBP eCLIP25.11■■□□□ 1.61
DDX54-203ENST00000546869 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
DDX54-203ENST00000546869 SOGA1O94964 1423 aa25.04■■□□□ 1.6
DDX54-203ENST00000546869 TARBP1Q13395 1621 aaKnown RBP25.02■■□□□ 1.6
DDX54-203ENST00000546869 TOP2BQ02880 1626 aa25.01■■□□□ 1.59
DDX54-203ENST00000546869 BIVM-ERCC5R4GMW8 1640 aa24.98■■□□□ 1.59
DDX54-203ENST00000546869 RAD54L2Q9Y4B4 1467 aa24.97■■□□□ 1.59
DDX54-203ENST00000546869 SYNJ1O43426 1573 aa24.97■■□□□ 1.59
DDX54-203ENST00000546869 ZNF608Q9ULD9 1512 aaPredicted RBP24.96■■□□□ 1.59
DDX54-203ENST00000546869 WDR97A6NE52 1622 aa24.89■■□□□ 1.57
DDX54-203ENST00000546869 ABCA10Q8WWZ4 1543 aa24.88■■□□□ 1.57
DDX54-203ENST00000546869 AQRO60306 1485 aaKnown RBP eCLIP24.87■■□□□ 1.574e-6■■■■■ 31
DDX54-203ENST00000546869 TDRD9Q8NDG6 1382 aaKnown RBP24.85■■□□□ 1.57
DDX54-203ENST00000546869 EIF4G3O43432 1585 aaKnown RBP24.84■■□□□ 1.57
DDX54-203ENST00000546869 GAPVD1Q14C86 1478 aa24.74■■□□□ 1.55
DDX54-203ENST00000546869 GRIN2BQ13224 1484 aa24.73■■□□□ 1.55
DDX54-203ENST00000546869 ABCA5Q8WWZ7 1642 aa24.7■■□□□ 1.54
DDX54-203ENST00000546869 DNAJC5Q9H3Z4 198 aa24.69■■□□□ 1.54
DDX54-203ENST00000546869 MAGI1Q96QZ7 1491 aaPredicted RBP24.65■■□□□ 1.54
DDX54-203ENST00000546869 OSCARQ8IYS5 282 aa24.64■■□□□ 1.54
DDX54-203ENST00000546869 TRIM41Q8WV44 630 aa24.63■■□□□ 1.53
DDX54-203ENST00000546869 SNAPC4Q5SXM2 1469 aa24.61■■□□□ 1.53
DDX54-203ENST00000546869 KIF27Q86VH2 1401 aa24.59■■□□□ 1.53
DDX54-203ENST00000546869 ERICH3Q5RHP9 1530 aa24.58■■□□□ 1.53
DDX54-203ENST00000546869 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
DDX54-203ENST00000546869 SYNJ2O15056 1496 aa24.55■■□□□ 1.52
DDX54-203ENST00000546869 CHMP7Q8WUX9 453 aaPredicted RBP24.53■■□□□ 1.52
DDX54-203ENST00000546869 FBLN2P98095 1184 aa24.51■■□□□ 1.51
DDX54-203ENST00000546869 IGF1RP08069 1367 aa24.5■■□□□ 1.51
DDX54-203ENST00000546869 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
DDX54-203ENST00000546869 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.5
DDX54-203ENST00000546869 CHD1O14646 1710 aa24.44■■□□□ 1.5
DDX54-203ENST00000546869 ADAMTS12P58397 1594 aa24.44■■□□□ 1.5
DDX54-203ENST00000546869 GRIN2AQ12879 1464 aa24.38■■□□□ 1.49
DDX54-203ENST00000546869 RUSC2Q8N2Y8 1516 aa24.34■■□□□ 1.49
DDX54-203ENST00000546869 CUL7Q14999 1698 aa24.34■■□□□ 1.49
DDX54-203ENST00000546869 CARMIL1Q5VZK9 1371 aa24.33■■□□□ 1.49
DDX54-203ENST00000546869 NUP160Q12769 1436 aa24.31■■□□□ 1.48
DDX54-203ENST00000546869 CLASP1Q7Z460 1538 aa24.29■■□□□ 1.48
DDX54-203ENST00000546869 EEA1Q15075 1411 aa24.26■■□□□ 1.47
DDX54-203ENST00000546869 CEP170Q5SW79 1584 aa24.21■■□□□ 1.47
DDX54-203ENST00000546869 CSRNP3Q8WYN3 585 aa24.2■■□□□ 1.46
DDX54-203ENST00000546869 RAPGEF2Q9Y4G8 1499 aa24.19■■□□□ 1.46
DDX54-203ENST00000546869 PRXQ9BXM0 1461 aa24.17■■□□□ 1.46
DDX54-203ENST00000546869 ARHGEF11O15085 1522 aa24.15■■□□□ 1.46
DDX54-203ENST00000546869 KIAA0586Q9BVV6 1533 aa24.13■■□□□ 1.45
DDX54-203ENST00000546869 RIMBP3CA6NJZ7 1639 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms