RNA–Protein interactions for RNA: ENST00000546869.1
Retrieved 6 of 6 RNA–protein pairs in 3 ms
DDX54-203, Transcript of DEAD-box helicase 54, human
TSL 3
Gene DDX54, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
DDX54-203 | ENST00000546869 | FXR2 | P51116 | 673 aa | Known RBP eCLIP | 16.27 | ■□□□□ 0.2 | 6e-12 | ■■■■■ 48.5 |
DDX54-203 | ENST00000546869 | FMR1 | Q06787 | 632 aa | Known RBP eCLIP | 17.58 | ■□□□□ 0.4 | 9e-11 | ■■■■■ 39.8 |
DDX54-203 | ENST00000546869 | PRPF8 | Q6P2Q9 | 2335 aa | Known RBP eCLIP | 12.05 | □□□□□ -0.48 | 8e-9 | ■■■□□ 18.3 |
DDX54-203 | ENST00000546869 | PPIG | Q13427 | 754 aa | Known RBP eCLIP | 16.23 | ■□□□□ 0.19 | 1e-7 | ■□□□□ 9.9 |
DDX54-203 | ENST00000546869 | AQR | O60306 | 1485 aa | Known RBP eCLIP | 24.87 | ■■□□□ 1.57 | 4e-6 | ■■■■■ 31 |
DDX54-203 | ENST00000546869 | YBX3 | P16989 | 372 aa | Known RBP eCLIP | 18.39 | ■□□□□ 0.53 | 9e-6 | ■□□□□ 10.4 |