RNA–Protein interactions for RNA: ENST00000543604.1

AC053513.1-201, humanhuman

TSL 3 BASIC

Gene AC053513.1, Length 738 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC053513.1-201ENST00000543604 AEBP2Q6ZN18 517 aaPredicted RBP29.39■■■□□ 2.3
AC053513.1-201ENST00000543604 CHIC1Q5VXU3 224 aa28.3■■■□□ 2.12
AC053513.1-201ENST00000543604 SENP3Q9H4L4 574 aaPredicted RBP24.92■■□□□ 1.58
AC053513.1-201ENST00000543604 PHF23Q9BUL5 403 aaPredicted RBP24.9■■□□□ 1.58
AC053513.1-201ENST00000543604 FOXD1Q16676 465 aa23.23■■□□□ 1.31
AC053513.1-201ENST00000543604 PLPPR3Q6T4P5 718 aa22.79■■□□□ 1.24
AC053513.1-201ENST00000543604 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
AC053513.1-201ENST00000543604 ADRA2BP18089 450 aa22.07■■□□□ 1.12
AC053513.1-201ENST00000543604 PIAS4Q8N2W9 510 aaPredicted RBP21.81■■□□□ 1.08
AC053513.1-201ENST00000543604 MSH5O43196 834 aa21.5■■□□□ 1.03
AC053513.1-201ENST00000543604 POTEDQ86YR6 584 aa20.29■□□□□ 0.84
AC053513.1-201ENST00000543604 MAPK8IP2Q13387 824 aaPredicted RBP20.15■□□□□ 0.82
AC053513.1-201ENST00000543604 NISCHQ9Y2I1 1504 aa20.11■□□□□ 0.81
AC053513.1-201ENST00000543604 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
AC053513.1-201ENST00000543604 PPP4R3CPQ6ZMV5 832 aa20.09■□□□□ 0.81
AC053513.1-201ENST00000543604 DMRT2Q9Y5R5 561 aa19.85■□□□□ 0.77
AC053513.1-201ENST00000543604 CNKSR2Q8WXI2 1034 aa19.57■□□□□ 0.72
AC053513.1-201ENST00000543604 NCBP3Q53F19 620 aaKnown RBP19.4■□□□□ 0.7
AC053513.1-201ENST00000543604 HOXD11P31277 338 aaPredicted RBP19.29■□□□□ 0.68
AC053513.1-201ENST00000543604 RNF216Q9NWF9 866 aaPredicted RBP19.26■□□□□ 0.67
AC053513.1-201ENST00000543604 KCNA4P22459 653 aa19.22■□□□□ 0.67
AC053513.1-201ENST00000543604 NPM3O75607 178 aaKnown RBP19.17■□□□□ 0.66
AC053513.1-201ENST00000543604 DCAF8L1A6NGE4 600 aa19.07■□□□□ 0.64
AC053513.1-201ENST00000543604 DNAJC5BQ9UF47 199 aa18.56■□□□□ 0.56
AC053513.1-201ENST00000543604 ABCC9O60706 1549 aa18.47■□□□□ 0.55
AC053513.1-201ENST00000543604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.42■□□□□ 0.54
AC053513.1-201ENST00000543604 RNF39Q9H2S5 420 aa18.41■□□□□ 0.54
AC053513.1-201ENST00000543604 CACNB1Q02641 598 aaPredicted RBP18.23■□□□□ 0.51
AC053513.1-201ENST00000543604 SLC4A1APQ9BWU0 796 aaKnown RBP18.21■□□□□ 0.51
AC053513.1-201ENST00000543604 SLC4A2P04920 1241 aa18.2■□□□□ 0.5
AC053513.1-201ENST00000543604 C1QBPQ07021 282 aaKnown RBP18.15■□□□□ 0.5
AC053513.1-201ENST00000543604 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
AC053513.1-201ENST00000543604 U3KPZ7 1027 aaPredicted RBP18.08■□□□□ 0.48
AC053513.1-201ENST00000543604 FOXD4L1Q9NU39 408 aa17.75■□□□□ 0.43
AC053513.1-201ENST00000543604 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
AC053513.1-201ENST00000543604 ZBTB22O15209 634 aa17.69■□□□□ 0.42
AC053513.1-201ENST00000543604 MYCNP04198 464 aaPredicted RBP17.68■□□□□ 0.42
AC053513.1-201ENST00000543604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
AC053513.1-201ENST00000543604 CAPN15O75808 1086 aa17.64■□□□□ 0.41
AC053513.1-201ENST00000543604 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
AC053513.1-201ENST00000543604 SAMD1Q6SPF0 538 aaPredicted RBP17.59■□□□□ 0.41
AC053513.1-201ENST00000543604 APLP2Q06481 763 aa17.54■□□□□ 0.4
AC053513.1-201ENST00000543604 TRHP20396 242 aaPredicted RBP17.49■□□□□ 0.39
AC053513.1-201ENST00000543604 RB1CC1Q8TDY2 1594 aa17.45■□□□□ 0.38
AC053513.1-201ENST00000543604 DSG3P32926 999 aa17.42■□□□□ 0.38
AC053513.1-201ENST00000543604 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
AC053513.1-201ENST00000543604 EHMT2Q96KQ7 1210 aa17.32■□□□□ 0.36
AC053513.1-201ENST00000543604 ATF5Q9Y2D1 282 aaPredicted RBP17.32■□□□□ 0.36
AC053513.1-201ENST00000543604 ABCB7O75027 752 aa17.31■□□□□ 0.36
AC053513.1-201ENST00000543604 CSRNP3Q8WYN3 585 aa17.28■□□□□ 0.36
AC053513.1-201ENST00000543604 NACADO15069 1562 aa17.27■□□□□ 0.35
AC053513.1-201ENST00000543604 DCAF8L2P0C7V8 631 aa17.23■□□□□ 0.35
AC053513.1-201ENST00000543604 PABPN1Q86U42 306 aaKnown RBP eCLIP17.21■□□□□ 0.35
AC053513.1-201ENST00000543604 ATXN8OSP0DMR3 200 aa17.12■□□□□ 0.33
AC053513.1-201ENST00000543604 POLA2Q14181 598 aa17.11■□□□□ 0.33
AC053513.1-201ENST00000543604 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
AC053513.1-201ENST00000543604 BICRAQ9NZM4 1560 aa16.87■□□□□ 0.29
AC053513.1-201ENST00000543604 UNC13AQ9UPW8 1703 aa16.84■□□□□ 0.29
AC053513.1-201ENST00000543604 SHROOM4Q9ULL8 1493 aa16.73■□□□□ 0.27
AC053513.1-201ENST00000543604 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
AC053513.1-201ENST00000543604 ZBTB12Q9Y330 459 aaPredicted RBP16.7■□□□□ 0.26
AC053513.1-201ENST00000543604 CC2D2AQ9P2K1 1620 aa16.62■□□□□ 0.25
AC053513.1-201ENST00000543604 DCAF1Q9Y4B6 1507 aa16.6■□□□□ 0.25
AC053513.1-201ENST00000543604 ZCCHC6Q5VYS8 1495 aaKnown RBP16.58■□□□□ 0.24
AC053513.1-201ENST00000543604 RBM42Q9BTD8 480 aaKnown RBP16.55■□□□□ 0.24
AC053513.1-201ENST00000543604 EIF4G1Q04637 1599 aaKnown RBP16.53■□□□□ 0.24
AC053513.1-201ENST00000543604 FBLN2P98095 1184 aa16.53■□□□□ 0.24
AC053513.1-201ENST00000543604 OSCARQ8IYS5 282 aa16.53■□□□□ 0.24
AC053513.1-201ENST00000543604 MKRN4PQ13434 485 aaPredicted RBP16.52■□□□□ 0.24
AC053513.1-201ENST00000543604 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
AC053513.1-201ENST00000543604 DNAJC5Q9H3Z4 198 aa16.47■□□□□ 0.23
AC053513.1-201ENST00000543604 AKT1S1Q96B36 256 aa16.29■□□□□ 0.2
AC053513.1-201ENST00000543604 SPDYE2BA6NHP3 402 aa16.26■□□□□ 0.19
AC053513.1-201ENST00000543604 SPDYE6P0CI01 402 aa16.26■□□□□ 0.19
AC053513.1-201ENST00000543604 SPDYE2Q495Y8 402 aa16.26■□□□□ 0.19
AC053513.1-201ENST00000543604 ZNF692Q9BU19 519 aaPredicted RBP16.19■□□□□ 0.18
AC053513.1-201ENST00000543604 REM2Q8IYK8 340 aaPredicted RBP16.17■□□□□ 0.18
AC053513.1-201ENST00000543604 SSUH2Q9Y2M2 353 aa16.1■□□□□ 0.17
AC053513.1-201ENST00000543604 CUX2O14529 1486 aa16.08■□□□□ 0.16
AC053513.1-201ENST00000543604 CHRDL2Q6WN34 429 aa16.05■□□□□ 0.16
AC053513.1-201ENST00000543604 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
AC053513.1-201ENST00000543604 PITPNM1O00562 1244 aa15.99■□□□□ 0.15
AC053513.1-201ENST00000543604 NCAPD3P42695 1498 aa15.98■□□□□ 0.15
AC053513.1-201ENST00000543604 POTEHQ6S545 545 aa15.98■□□□□ 0.15
AC053513.1-201ENST00000543604 SPDYE4A6NLX3 237 aa15.95■□□□□ 0.14
AC053513.1-201ENST00000543604 CLEC11AQ9Y240 323 aa15.89■□□□□ 0.13
AC053513.1-201ENST00000543604 SPDYE1Q8NFV5 336 aaPredicted RBP15.87■□□□□ 0.13
AC053513.1-201ENST00000543604 ATAD2BQ9ULI0 1458 aa15.86■□□□□ 0.13
AC053513.1-201ENST00000543604 SMARCA2P51531 1590 aa15.8■□□□□ 0.12
AC053513.1-201ENST00000543604 PIP4P2Q8N4L2 257 aa15.79■□□□□ 0.12
AC053513.1-201ENST00000543604 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
AC053513.1-201ENST00000543604 FXR2P51116 673 aaKnown RBP eCLIP15.75■□□□□ 0.11
AC053513.1-201ENST00000543604 NESP48681 1621 aa15.75■□□□□ 0.11
AC053513.1-201ENST00000543604 BAZ1BQ9UIG0 1483 aaKnown RBP15.7■□□□□ 0.1
AC053513.1-201ENST00000543604 SMARCA4P51532 1647 aa15.69■□□□□ 0.1
AC053513.1-201ENST00000543604 PRR29P0C7W0 189 aa15.66■□□□□ 0.1
AC053513.1-201ENST00000543604 FKBP8Q14318 412 aa15.64■□□□□ 0.09
AC053513.1-201ENST00000543604 BAZ1AQ9NRL2 1556 aaPredicted RBP15.63■□□□□ 0.09
AC053513.1-201ENST00000543604 PDS5BQ9NTI5 1447 aa15.63■□□□□ 0.09
AC053513.1-201ENST00000543604 LAMC3Q9Y6N6 1575 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms