RNA–Protein interactions for RNA: ENST00000543341.6

GTF2H3-212, Transcript of general transcription factor IIH subunit 3, human

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2H3, Length 3,329 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GTF2H3-212	ENST00000543341	NISCH	Q9Y2I1	1504 aa		17.76	■□□□□ 0.43
GTF2H3-212	ENST00000543341	CCDC180	Q9P1Z9	1646 aa		15.91	■□□□□ 0.14
GTF2H3-212	ENST00000543341	DCAF1	Q9Y4B6	1507 aa		14.96	□□□□□ -0.01
GTF2H3-212	ENST00000543341	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.96	□□□□□ -0.02
GTF2H3-212	ENST00000543341	MYO15B	Q96JP2	1530 aa		14.93	□□□□□ -0.02
GTF2H3-212	ENST00000543341	NACAD	O15069	1562 aa		14.69	□□□□□ -0.06
GTF2H3-212	ENST00000543341	ABCC9	O60706	1549 aa		14.63	□□□□□ -0.07
GTF2H3-212	ENST00000543341	RB1CC1	Q8TDY2	1594 aa		14.54	□□□□□ -0.08
GTF2H3-212	ENST00000543341	UNC13A	Q9UPW8	1703 aa		14.5	□□□□□ -0.09
GTF2H3-212	ENST00000543341	BICRA	Q9NZM4	1560 aa		14.25	□□□□□ -0.13
GTF2H3-212	ENST00000543341	SHROOM4	Q9ULL8	1493 aa		14.23	□□□□□ -0.13
GTF2H3-212	ENST00000543341	SCRIB	Q14160	1630 aa		14.15	□□□□□ -0.14
GTF2H3-212	ENST00000543341	PEG3	Q9GZU2	1588 aa		13.83	□□□□□ -0.2
GTF2H3-212	ENST00000543341	DCAF8L2	P0C7V8	631 aa		13.78	□□□□□ -0.2
GTF2H3-212	ENST00000543341	SMARCA4	P51532	1647 aa		13.76	□□□□□ -0.21
GTF2H3-212	ENST00000543341	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.73	□□□□□ -0.21
GTF2H3-212	ENST00000543341	EIF4G1	Q04637	1599 aa	Known RBP	13.7	□□□□□ -0.22
GTF2H3-212	ENST00000543341	CECR2	Q9BXF3	1484 aa		13.65	□□□□□ -0.22
GTF2H3-212	ENST00000543341	MROH2B	Q7Z745	1585 aa		13.63	□□□□□ -0.23
GTF2H3-212	ENST00000543341	HMGXB3	Q12766	1538 aa		13.57	□□□□□ -0.24
GTF2H3-212	ENST00000543341	SMARCA2	P51531	1590 aa		13.56	□□□□□ -0.24
GTF2H3-212	ENST00000543341	RSF1	Q96T23	1441 aa	Predicted RBP	13.56	□□□□□ -0.24
GTF2H3-212	ENST00000543341	WIZ	O95785	1651 aa		13.53	□□□□□ -0.24
GTF2H3-212	ENST00000543341	CC2D2A	Q9P2K1	1620 aa		13.53	□□□□□ -0.24
GTF2H3-212	ENST00000543341	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
GTF2H3-212	ENST00000543341	NCAPD3	P42695	1498 aa		13.49	□□□□□ -0.25
GTF2H3-212	ENST00000543341	ATAD2B	Q9ULI0	1458 aa		13.48	□□□□□ -0.25
GTF2H3-212	ENST00000543341	TOP2A	P11388	1531 aa	Known RBP	13.48	□□□□□ -0.25
GTF2H3-212	ENST00000543341	PRDM2	Q13029	1718 aa		13.36	□□□□□ -0.27
GTF2H3-212	ENST00000543341	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.28	□□□□□ -0.28
GTF2H3-212	ENST00000543341	CCDC88B	A6NC98	1476 aa		13.18	□□□□□ -0.3
GTF2H3-212	ENST00000543341	LAMC3	Q9Y6N6	1575 aa		13.13	□□□□□ -0.31
GTF2H3-212	ENST00000543341	DNAJC5B	Q9UF47	199 aa		13.12	□□□□□ -0.31
GTF2H3-212	ENST00000543341	CFTR	P13569	1480 aa		13.1	□□□□□ -0.31
GTF2H3-212	ENST00000543341	KIF21A	Q7Z4S6	1674 aa		12.98	□□□□□ -0.33
GTF2H3-212	ENST00000543341	BIVM-ERCC5	R4GMW8	1640 aa		12.97	□□□□□ -0.33
GTF2H3-212	ENST00000543341	CADPS	Q9ULU8	1353 aa		12.94	□□□□□ -0.34
GTF2H3-212	ENST00000543341	THOC2	Q8NI27	1593 aa	Known RBP	12.93	□□□□□ -0.34
GTF2H3-212	ENST00000543341	WDR97	A6NE52	1622 aa		12.87	□□□□□ -0.35
GTF2H3-212	ENST00000543341	NES	P48681	1621 aa		12.87	□□□□□ -0.35
GTF2H3-212	ENST00000543341	TOP2B	Q02880	1626 aa		12.87	□□□□□ -0.35
GTF2H3-212	ENST00000543341	WDR62	O43379	1518 aa		12.86	□□□□□ -0.35
GTF2H3-212	ENST00000543341	SUPT5H	O00267	1087 aa	Known RBP	12.85	□□□□□ -0.35
GTF2H3-212	ENST00000543341	DNMBP	Q6XZF7	1577 aa		12.82	□□□□□ -0.36
GTF2H3-212	ENST00000543341	SYNJ1	O43426	1573 aa		12.81	□□□□□ -0.36
GTF2H3-212	ENST00000543341	FANCD2	Q9BXW9	1451 aa		12.81	□□□□□ -0.36
GTF2H3-212	ENST00000543341	CUX1	P39880	1505 aa		12.8	□□□□□ -0.36
GTF2H3-212	ENST00000543341	PDS5B	Q9NTI5	1447 aa		12.77	□□□□□ -0.37
GTF2H3-212	ENST00000543341	URB2	Q14146	1524 aa	Known RBP	12.77	□□□□□ -0.37
GTF2H3-212	ENST00000543341	ABCC8	Q09428	1581 aa		12.76	□□□□□ -0.37
GTF2H3-212	ENST00000543341	CEP164	Q9UPV0	1460 aa		12.75	□□□□□ -0.37
GTF2H3-212	ENST00000543341	TARBP1	Q13395	1621 aa	Known RBP	12.75	□□□□□ -0.37
GTF2H3-212	ENST00000543341	MRC2	Q9UBG0	1479 aa		12.73	□□□□□ -0.37
GTF2H3-212	ENST00000543341	TOPBP1	Q92547	1522 aa		12.72	□□□□□ -0.37
GTF2H3-212	ENST00000543341	ABCA5	Q8WWZ7	1642 aa		12.68	□□□□□ -0.38
GTF2H3-212	ENST00000543341	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.66	□□□□□ -0.38
GTF2H3-212	ENST00000543341	CUX2	O14529	1486 aa		12.64	□□□□□ -0.39
GTF2H3-212	ENST00000543341	ABCA10	Q8WWZ4	1543 aa		12.62	□□□□□ -0.39
GTF2H3-212	ENST00000543341	POLA1	P09884	1462 aa	Predicted RBP	12.62	□□□□□ -0.39
GTF2H3-212	ENST00000543341	FGD5	Q6ZNL6	1462 aa		12.59	□□□□□ -0.39
GTF2H3-212	ENST00000543341	PBRM1	Q86U86	1689 aa		12.59	□□□□□ -0.39
GTF2H3-212	ENST00000543341	IFT140	Q96RY7	1462 aa		12.54	□□□□□ -0.4
GTF2H3-212	ENST00000543341	EIF4G3	O43432	1585 aa	Known RBP	12.52	□□□□□ -0.4
GTF2H3-212	ENST00000543341	ERCC6	Q03468	1493 aa		12.51	□□□□□ -0.41
GTF2H3-212	ENST00000543341	CUL7	Q14999	1698 aa		12.5	□□□□□ -0.41
GTF2H3-212	ENST00000543341	ERICH3	Q5RHP9	1530 aa		12.5	□□□□□ -0.41
GTF2H3-212	ENST00000543341	CHIC1	Q5VXU3	224 aa		12.5	□□□□□ -0.41
GTF2H3-212	ENST00000543341	KIF21B	O75037	1637 aa		12.48	□□□□□ -0.41
GTF2H3-212	ENST00000543341	EEA1	Q15075	1411 aa		12.46	□□□□□ -0.41
GTF2H3-212	ENST00000543341	ADAMTS12	P58397	1594 aa		12.45	□□□□□ -0.42
GTF2H3-212	ENST00000543341	RAD54L2	Q9Y4B4	1467 aa		12.43	□□□□□ -0.42
GTF2H3-212	ENST00000543341	SOGA1	O94964	1423 aa		12.41	□□□□□ -0.42
GTF2H3-212	ENST00000543341	PRX	Q9BXM0	1461 aa		12.4	□□□□□ -0.42
GTF2H3-212	ENST00000543341	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.38	□□□□□ -0.43
GTF2H3-212	ENST00000543341	RUSC2	Q8N2Y8	1516 aa		12.38	□□□□□ -0.43
GTF2H3-212	ENST00000543341	CTTNBP2	Q8WZ74	1663 aa		12.36	□□□□□ -0.43
GTF2H3-212	ENST00000543341	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.36	□□□□□ -0.43
GTF2H3-212	ENST00000543341	GAPVD1	Q14C86	1478 aa		12.35	□□□□□ -0.43
GTF2H3-212	ENST00000543341	KIF27	Q86VH2	1401 aa		12.34	□□□□□ -0.43
GTF2H3-212	ENST00000543341	GRIN2B	Q13224	1484 aa		12.34	□□□□□ -0.43
GTF2H3-212	ENST00000543341	CHD1	O14646	1710 aa		12.32	□□□□□ -0.44
GTF2H3-212	ENST00000543341	IGF1R	P08069	1367 aa		12.31	□□□□□ -0.44
GTF2H3-212	ENST00000543341	SHROOM2	Q13796	1616 aa		12.31	□□□□□ -0.44
GTF2H3-212	ENST00000543341	CLASP1	Q7Z460	1538 aa		12.27	□□□□□ -0.45
GTF2H3-212	ENST00000543341	SYNJ2	O15056	1496 aa		12.26	□□□□□ -0.45
GTF2H3-212	ENST00000543341	FHAD1	B1AJZ9	1412 aa		12.26	□□□□□ -0.45
GTF2H3-212	ENST00000543341	AQR	O60306	1485 aa	Known RBP eCLIP	12.25	□□□□□ -0.45	3e-6	■■■□□ 15.2
GTF2H3-212	ENST00000543341	CEP170	Q5SW79	1584 aa		12.25	□□□□□ -0.45
GTF2H3-212	ENST00000543341	TRIM41	Q8WV44	630 aa		12.25	□□□□□ -0.45
GTF2H3-212	ENST00000543341	SNAPC4	Q5SXM2	1469 aa		12.24	□□□□□ -0.45
GTF2H3-212	ENST00000543341	NUP160	Q12769	1436 aa		12.23	□□□□□ -0.45
GTF2H3-212	ENST00000543341	SAMD9	Q5K651	1589 aa		12.23	□□□□□ -0.45
GTF2H3-212	ENST00000543341	GRIN2A	Q12879	1464 aa		12.22	□□□□□ -0.45
GTF2H3-212	ENST00000543341	RAPGEF2	Q9Y4G8	1499 aa		12.22	□□□□□ -0.45
GTF2H3-212	ENST00000543341	TDRD9	Q8NDG6	1382 aa	Known RBP	12.19	□□□□□ -0.46
GTF2H3-212	ENST00000543341	GOLGA3	Q08378	1498 aa		12.18	□□□□□ -0.46
GTF2H3-212	ENST00000543341	UGGT2	Q9NYU1	1516 aa		12.17	□□□□□ -0.46
GTF2H3-212	ENST00000543341	CARMIL1	Q5VZK9	1371 aa		12.14	□□□□□ -0.47
GTF2H3-212	ENST00000543341	IQGAP2	Q13576	1575 aa		12.13	□□□□□ -0.47
GTF2H3-212	ENST00000543341	EFCAB5	A4FU69	1503 aa		12.12	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms