RNA–Protein interactions for RNA: ENST00000542230.6

TMEM50B-210, Transcript of transmembrane protein 50B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM50B, Length 2,375 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM50B-210ENST00000542230 NISCHQ9Y2I1 1504 aa38.25■■■■□ 3.71
TMEM50B-210ENST00000542230 CCDC180Q9P1Z9 1646 aa32.93■■■□□ 2.86
TMEM50B-210ENST00000542230 ZCCHC6Q5VYS8 1495 aaKnown RBP32.16■■■□□ 2.74
TMEM50B-210ENST00000542230 DCAF8L2P0C7V8 631 aa31.91■■■□□ 2.7
TMEM50B-210ENST00000542230 SHROOM4Q9ULL8 1493 aa31.88■■■□□ 2.69
TMEM50B-210ENST00000542230 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.62
TMEM50B-210ENST00000542230 ABCC9O60706 1549 aa31.32■■■□□ 2.6
TMEM50B-210ENST00000542230 MYO15BQ96JP2 1530 aa30.83■■■□□ 2.53
TMEM50B-210ENST00000542230 SUPT5HO00267 1087 aaKnown RBP30.81■■■□□ 2.52
TMEM50B-210ENST00000542230 SCRIBQ14160 1630 aa30.71■■■□□ 2.51
TMEM50B-210ENST00000542230 NACADO15069 1562 aa30.67■■■□□ 2.5
TMEM50B-210ENST00000542230 RB1CC1Q8TDY2 1594 aa30.36■■■□□ 2.45
TMEM50B-210ENST00000542230 CECR2Q9BXF3 1484 aa29.92■■■□□ 2.38
TMEM50B-210ENST00000542230 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
TMEM50B-210ENST00000542230 RSF1Q96T23 1441 aaPredicted RBP29.91■■■□□ 2.38
TMEM50B-210ENST00000542230 PABPN1Q86U42 306 aaKnown RBP eCLIP29.76■■■□□ 2.35
TMEM50B-210ENST00000542230 MROH2BQ7Z745 1585 aa29.7■■■□□ 2.34
TMEM50B-210ENST00000542230 BICRAQ9NZM4 1560 aa29.63■■■□□ 2.33
TMEM50B-210ENST00000542230 CHIC1Q5VXU3 224 aa29.54■■■□□ 2.32
TMEM50B-210ENST00000542230 WIZO95785 1651 aa29.48■■■□□ 2.31
TMEM50B-210ENST00000542230 BAZ1AQ9NRL2 1556 aaPredicted RBP29.42■■■□□ 2.3
TMEM50B-210ENST00000542230 SMARCA4P51532 1647 aa29.31■■■□□ 2.28
TMEM50B-210ENST00000542230 TOP2AP11388 1531 aaKnown RBP28.99■■■□□ 2.23
TMEM50B-210ENST00000542230 CCDC88BA6NC98 1476 aa28.86■■■□□ 2.21
TMEM50B-210ENST00000542230 SMARCA2P51531 1590 aa28.82■■■□□ 2.2
TMEM50B-210ENST00000542230 PEG3Q9GZU2 1588 aa28.81■■■□□ 2.2
TMEM50B-210ENST00000542230 ATAD2BQ9ULI0 1458 aa28.8■■■□□ 2.2
TMEM50B-210ENST00000542230 TRIM41Q8WV44 630 aa28.76■■■□□ 2.19
TMEM50B-210ENST00000542230 EIF4G1Q04637 1599 aaKnown RBP28.68■■■□□ 2.18
TMEM50B-210ENST00000542230 BAZ1BQ9UIG0 1483 aaKnown RBP28.64■■■□□ 2.17
TMEM50B-210ENST00000542230 LOC105371045A0A1W2PR82 267 aa28.64■■■□□ 2.17
TMEM50B-210ENST00000542230 FAM9AQ8IZU1 332 aaPredicted RBP28.5■■■□□ 2.15
TMEM50B-210ENST00000542230 ABCC8Q09428 1581 aa28.47■■■□□ 2.15
TMEM50B-210ENST00000542230 NCAPD3P42695 1498 aa28.41■■■□□ 2.14
TMEM50B-210ENST00000542230 HMGXB3Q12766 1538 aa28.31■■■□□ 2.12
TMEM50B-210ENST00000542230 EHMT2Q96KQ7 1210 aa28.28■■■□□ 2.12
TMEM50B-210ENST00000542230 CC2D2AQ9P2K1 1620 aa28.2■■■□□ 2.1
TMEM50B-210ENST00000542230 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
TMEM50B-210ENST00000542230 SOGA1O94964 1423 aa28.03■■■□□ 2.08
TMEM50B-210ENST00000542230 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
TMEM50B-210ENST00000542230 RUSC2Q8N2Y8 1516 aa27.96■■■□□ 2.07
TMEM50B-210ENST00000542230 CFTRP13569 1480 aa27.92■■■□□ 2.06
TMEM50B-210ENST00000542230 DNAJC5BQ9UF47 199 aa27.86■■■□□ 2.05
TMEM50B-210ENST00000542230 CADPSQ9ULU8 1353 aa27.78■■■□□ 2.04
TMEM50B-210ENST00000542230 CSRNP3Q8WYN3 585 aa27.75■■■□□ 2.03
TMEM50B-210ENST00000542230 TOP2BQ02880 1626 aa27.73■■■□□ 2.03
TMEM50B-210ENST00000542230 CUX1P39880 1505 aa27.71■■■□□ 2.03
TMEM50B-210ENST00000542230 NESP48681 1621 aa27.64■■■□□ 2.02
TMEM50B-210ENST00000542230 BIVM-ERCC5R4GMW8 1640 aa27.64■■■□□ 2.02
TMEM50B-210ENST00000542230 EEA1Q15075 1411 aa27.64■■■□□ 2.02
TMEM50B-210ENST00000542230 PCGF6Q9BYE7 350 aa27.61■■■□□ 2.01
TMEM50B-210ENST00000542230 PRDM2Q13029 1718 aa27.59■■■□□ 2.01
TMEM50B-210ENST00000542230 UBTFP17480 764 aaKnown RBP27.52■■■□□ 2
TMEM50B-210ENST00000542230 FANCD2Q9BXW9 1451 aa27.5■■□□□ 1.99
TMEM50B-210ENST00000542230 TNIKQ9UKE5 1360 aa27.43■■□□□ 1.98
TMEM50B-210ENST00000542230 GOLGA3Q08378 1498 aa27.43■■□□□ 1.98
TMEM50B-210ENST00000542230 CEP162Q5TB80 1403 aa27.41■■□□□ 1.98
TMEM50B-210ENST00000542230 PPARGC1BQ86YN6 1023 aaKnown RBP27.39■■□□□ 1.98
TMEM50B-210ENST00000542230 RAPGEF2Q9Y4G8 1499 aa27.38■■□□□ 1.97
TMEM50B-210ENST00000542230 CEP164Q9UPV0 1460 aa27.38■■□□□ 1.97
TMEM50B-210ENST00000542230 KIF21BO75037 1637 aa27.35■■□□□ 1.97
TMEM50B-210ENST00000542230 FGD5Q6ZNL6 1462 aa27.34■■□□□ 1.97
TMEM50B-210ENST00000542230 LAMC3Q9Y6N6 1575 aa27.31■■□□□ 1.96
TMEM50B-210ENST00000542230 KIF27Q86VH2 1401 aa27.29■■□□□ 1.96
TMEM50B-210ENST00000542230 TRIM26Q12899 539 aaPredicted RBP27.28■■□□□ 1.96
TMEM50B-210ENST00000542230 CUX2O14529 1486 aa27.25■■□□□ 1.95
TMEM50B-210ENST00000542230 RANGAP1P46060 587 aaPredicted RBP27.25■■□□□ 1.95
TMEM50B-210ENST00000542230 TOPBP1Q92547 1522 aa27.23■■□□□ 1.95
TMEM50B-210ENST00000542230 PRXQ9BXM0 1461 aa27.23■■□□□ 1.95
TMEM50B-210ENST00000542230 RAD54L2Q9Y4B4 1467 aa27.2■■□□□ 1.95
TMEM50B-210ENST00000542230 DNMBPQ6XZF7 1577 aa27.2■■□□□ 1.94
TMEM50B-210ENST00000542230 URB2Q14146 1524 aaKnown RBP27.19■■□□□ 1.94
TMEM50B-210ENST00000542230 PDS5BQ9NTI5 1447 aa27.16■■□□□ 1.94
TMEM50B-210ENST00000542230 POLA1P09884 1462 aaPredicted RBP27.16■■□□□ 1.94
TMEM50B-210ENST00000542230 IGF1RP08069 1367 aa27.14■■□□□ 1.94
TMEM50B-210ENST00000542230 KIF21AQ7Z4S6 1674 aa27.13■■□□□ 1.93
TMEM50B-210ENST00000542230 TTBK1Q5TCY1 1321 aaPredicted RBP27.11■■□□□ 1.93
TMEM50B-210ENST00000542230 CLIP1P30622 1438 aa27.1■■□□□ 1.93
TMEM50B-210ENST00000542230 ERICH3Q5RHP9 1530 aa27.08■■□□□ 1.93
TMEM50B-210ENST00000542230 ABCA10Q8WWZ4 1543 aa27■■□□□ 1.91
TMEM50B-210ENST00000542230 CARMIL1Q5VZK9 1371 aa26.98■■□□□ 1.91
TMEM50B-210ENST00000542230 TDRD9Q8NDG6 1382 aaKnown RBP26.94■■□□□ 1.9
TMEM50B-210ENST00000542230 HRCP23327 699 aa26.93■■□□□ 1.9
TMEM50B-210ENST00000542230 VPS8Q8N3P4 1428 aa26.85■■□□□ 1.89
TMEM50B-210ENST00000542230 WDR97A6NE52 1622 aa26.84■■□□□ 1.89
TMEM50B-210ENST00000542230 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
TMEM50B-210ENST00000542230 MRC2Q9UBG0 1479 aa26.81■■□□□ 1.88
TMEM50B-210ENST00000542230 TARBP1Q13395 1621 aaKnown RBP26.76■■□□□ 1.87
TMEM50B-210ENST00000542230 GAPVD1Q14C86 1478 aa26.75■■□□□ 1.87
TMEM50B-210ENST00000542230 ARHGAP35Q9NRY4 1499 aa26.74■■□□□ 1.87
TMEM50B-210ENST00000542230 ABCA5Q8WWZ7 1642 aa26.74■■□□□ 1.87
TMEM50B-210ENST00000542230 AQRO60306 1485 aaKnown RBP eCLIP26.69■■□□□ 1.861e-9■■■□□ 17.5
TMEM50B-210ENST00000542230 ERCC6Q03468 1493 aa26.69■■□□□ 1.86
TMEM50B-210ENST00000542230 CUL7Q14999 1698 aa26.64■■□□□ 1.86
TMEM50B-210ENST00000542230 P3H3Q8IVL6 736 aa26.63■■□□□ 1.85
TMEM50B-210ENST00000542230 WDR62O43379 1518 aa26.63■■□□□ 1.85
TMEM50B-210ENST00000542230 APLP2Q06481 763 aa26.62■■□□□ 1.85
TMEM50B-210ENST00000542230 ZNF608Q9ULD9 1512 aaPredicted RBP26.61■■□□□ 1.85
TMEM50B-210ENST00000542230 KANK4Q5T7N3 995 aaPredicted RBP26.56■■□□□ 1.84
TMEM50B-210ENST00000542230 THOC2Q8NI27 1593 aaKnown RBP26.51■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms