RNA–Protein interactions for RNA: ENST00000542179.1

LDHA-220, Transcript of lactate dehydrogenase A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDHA, Length 1,288 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-220ENST00000542179 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
LDHA-220ENST00000542179 CHIC1Q5VXU3 224 aa24.46■■□□□ 1.51
LDHA-220ENST00000542179 SENP3Q9H4L4 574 aaPredicted RBP21.79■■□□□ 1.08
LDHA-220ENST00000542179 PHF23Q9BUL5 403 aaPredicted RBP21.51■■□□□ 1.03
LDHA-220ENST00000542179 NISCHQ9Y2I1 1504 aa21.27■■□□□ 1
LDHA-220ENST00000542179 FOXD1Q16676 465 aa20.21■□□□□ 0.83
LDHA-220ENST00000542179 PLPPR3Q6T4P5 718 aa19.7■□□□□ 0.74
LDHA-220ENST00000542179 PPP6R1Q9UPN7 881 aa19.03■□□□□ 0.64
LDHA-220ENST00000542179 ADRA2BP18089 450 aa19.02■□□□□ 0.64
LDHA-220ENST00000542179 PIAS4Q8N2W9 510 aaPredicted RBP18.98■□□□□ 0.63
LDHA-220ENST00000542179 MSH5O43196 834 aa18.92■□□□□ 0.62
LDHA-220ENST00000542179 CCDC180Q9P1Z9 1646 aa18.64■□□□□ 0.57
LDHA-220ENST00000542179 POTEDQ86YR6 584 aa18■□□□□ 0.47
LDHA-220ENST00000542179 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
LDHA-220ENST00000542179 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
LDHA-220ENST00000542179 ABCC9O60706 1549 aa17.64■□□□□ 0.41
LDHA-220ENST00000542179 SCAF1Q9H7N4 1312 aaKnown RBP17.56■□□□□ 0.4
LDHA-220ENST00000542179 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.39
LDHA-220ENST00000542179 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
LDHA-220ENST00000542179 NACADO15069 1562 aa17.4■□□□□ 0.38
LDHA-220ENST00000542179 MAPK8IP2Q13387 824 aaPredicted RBP17.39■□□□□ 0.37
LDHA-220ENST00000542179 DMRT2Q9Y5R5 561 aa17.29■□□□□ 0.36
LDHA-220ENST00000542179 PPP4R3CPQ6ZMV5 832 aa17.26■□□□□ 0.35
LDHA-220ENST00000542179 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
LDHA-220ENST00000542179 SHROOM4Q9ULL8 1493 aa17.11■□□□□ 0.33
LDHA-220ENST00000542179 SCRIBQ14160 1630 aa17.01■□□□□ 0.31
LDHA-220ENST00000542179 CNKSR2Q8WXI2 1034 aa16.92■□□□□ 0.3
LDHA-220ENST00000542179 UNC13AQ9UPW8 1703 aa16.85■□□□□ 0.29
LDHA-220ENST00000542179 NCBP3Q53F19 620 aaKnown RBP16.76■□□□□ 0.27
LDHA-220ENST00000542179 HOXD11P31277 338 aaPredicted RBP16.73■□□□□ 0.27
LDHA-220ENST00000542179 BICRAQ9NZM4 1560 aa16.72■□□□□ 0.27
LDHA-220ENST00000542179 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
LDHA-220ENST00000542179 DCAF8L1A6NGE4 600 aa16.62■□□□□ 0.25
LDHA-220ENST00000542179 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
LDHA-220ENST00000542179 PABPN1Q86U42 306 aaKnown RBP eCLIP16.59■□□□□ 0.253e-14■□□□□ 10.1
LDHA-220ENST00000542179 CECR2Q9BXF3 1484 aa16.49■□□□□ 0.23
LDHA-220ENST00000542179 BAZ1AQ9NRL2 1556 aaPredicted RBP16.44■□□□□ 0.22
LDHA-220ENST00000542179 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
LDHA-220ENST00000542179 SUPT5HO00267 1087 aaKnown RBP16.42■□□□□ 0.22
LDHA-220ENST00000542179 MROH2BQ7Z745 1585 aa16.39■□□□□ 0.21
LDHA-220ENST00000542179 NPM3O75607 178 aaKnown RBP16.39■□□□□ 0.21
LDHA-220ENST00000542179 DNAJC5Q9H3Z4 198 aa16.37■□□□□ 0.21
LDHA-220ENST00000542179 SMARCA4P51532 1647 aa16.36■□□□□ 0.21
LDHA-220ENST00000542179 KCNA4P22459 653 aa16.26■□□□□ 0.19
LDHA-220ENST00000542179 WIZO95785 1651 aa16.24■□□□□ 0.19
LDHA-220ENST00000542179 PEG3Q9GZU2 1588 aa16.23■□□□□ 0.19
LDHA-220ENST00000542179 EIF4G1Q04637 1599 aaKnown RBP16.22■□□□□ 0.19
LDHA-220ENST00000542179 SMARCA2P51531 1590 aa16.14■□□□□ 0.17
LDHA-220ENST00000542179 ATAD2BQ9ULI0 1458 aa16.14■□□□□ 0.17
LDHA-220ENST00000542179 RNF39Q9H2S5 420 aa16.11■□□□□ 0.17
LDHA-220ENST00000542179 TOP2AP11388 1531 aaKnown RBP16.1■□□□□ 0.17
LDHA-220ENST00000542179 CACNB1Q02641 598 aaPredicted RBP16.1■□□□□ 0.17
LDHA-220ENST00000542179 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
LDHA-220ENST00000542179 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
LDHA-220ENST00000542179 HMGXB3Q12766 1538 aa16.01■□□□□ 0.15
LDHA-220ENST00000542179 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.01■□□□□ 0.15
LDHA-220ENST00000542179 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
LDHA-220ENST00000542179 C1QBPQ07021 282 aaKnown RBP15.94■□□□□ 0.14
LDHA-220ENST00000542179 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
LDHA-220ENST00000542179 CFTRP13569 1480 aa15.65■□□□□ 0.1
LDHA-220ENST00000542179 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
LDHA-220ENST00000542179 U3KPZ7 1027 aaPredicted RBP15.61■□□□□ 0.09
LDHA-220ENST00000542179 SLC4A2P04920 1241 aa15.57■□□□□ 0.08
LDHA-220ENST00000542179 PRDM2Q13029 1718 aa15.54■□□□□ 0.08
LDHA-220ENST00000542179 LAMC3Q9Y6N6 1575 aa15.52■□□□□ 0.07
LDHA-220ENST00000542179 TRIM41Q8WV44 630 aa15.51■□□□□ 0.07
LDHA-220ENST00000542179 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
LDHA-220ENST00000542179 WRNQ14191 1432 aaPredicted RBP eCLIP15.46■□□□□ 0.07
LDHA-220ENST00000542179 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
LDHA-220ENST00000542179 NESP48681 1621 aa15.44■□□□□ 0.06
LDHA-220ENST00000542179 FANCD2Q9BXW9 1451 aa15.4■□□□□ 0.06
LDHA-220ENST00000542179 PDS5BQ9NTI5 1447 aa15.4■□□□□ 0.06
LDHA-220ENST00000542179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
LDHA-220ENST00000542179 HNRNPUL2Q1KMD3 747 aaKnown RBP15.39■□□□□ 0.05
LDHA-220ENST00000542179 SYNJ1O43426 1573 aa15.38■□□□□ 0.05
LDHA-220ENST00000542179 TOP2BQ02880 1626 aa15.37■□□□□ 0.05
LDHA-220ENST00000542179 APLP2Q06481 763 aa15.37■□□□□ 0.05
LDHA-220ENST00000542179 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
LDHA-220ENST00000542179 CAPN15O75808 1086 aa15.36■□□□□ 0.05
LDHA-220ENST00000542179 CUX1P39880 1505 aa15.33■□□□□ 0.05
LDHA-220ENST00000542179 CEP164Q9UPV0 1460 aa15.33■□□□□ 0.04
LDHA-220ENST00000542179 SPINK5Q9NQ38 1064 aaPredicted RBP15.3■□□□□ 0.04
LDHA-220ENST00000542179 SAMD1Q6SPF0 538 aaPredicted RBP15.27■□□□□ 0.04
LDHA-220ENST00000542179 KIF21AQ7Z4S6 1674 aa15.27■□□□□ 0.03
LDHA-220ENST00000542179 DNMBPQ6XZF7 1577 aa15.27■□□□□ 0.03
LDHA-220ENST00000542179 TOPBP1Q92547 1522 aa15.23■□□□□ 0.03
LDHA-220ENST00000542179 EEA1Q15075 1411 aa15.22■□□□□ 0.03
LDHA-220ENST00000542179 URB2Q14146 1524 aaKnown RBP15.22■□□□□ 0.03
LDHA-220ENST00000542179 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
LDHA-220ENST00000542179 SOGA1O94964 1423 aa15.19■□□□□ 0.02
LDHA-220ENST00000542179 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
LDHA-220ENST00000542179 MRC2Q9UBG0 1479 aa15.19■□□□□ 0.02
LDHA-220ENST00000542179 FOXD4L1Q9NU39 408 aa15.17■□□□□ 0.02
LDHA-220ENST00000542179 DSG3P32926 999 aa15.16■□□□□ 0.02
LDHA-220ENST00000542179 ZNF219Q9P2Y4 722 aaPredicted RBP15.16■□□□□ 0.02
LDHA-220ENST00000542179 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
LDHA-220ENST00000542179 POLA1P09884 1462 aaPredicted RBP15.14■□□□□ 0.01
LDHA-220ENST00000542179 ERCC6Q03468 1493 aa15.14■□□□□ 0.01
LDHA-220ENST00000542179 RUSC2Q8N2Y8 1516 aa15.14■□□□□ 0.01
LDHA-220ENST00000542179 WDR62O43379 1518 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms