RNA–Protein interactions for RNA: ENST00000541888.2

AC005840.3-201, humanhuman

TSL 5 BASIC

Gene AC005840.3, Length 1,803 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC005840.3-201ENST00000541888 AEBP2Q6ZN18 517 aaPredicted RBP24.46■■□□□ 1.51
AC005840.3-201ENST00000541888 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
AC005840.3-201ENST00000541888 SENP3Q9H4L4 574 aaPredicted RBP20.76■□□□□ 0.91
AC005840.3-201ENST00000541888 PHF23Q9BUL5 403 aaPredicted RBP20.71■□□□□ 0.91
AC005840.3-201ENST00000541888 FOXD1Q16676 465 aa19.35■□□□□ 0.69
AC005840.3-201ENST00000541888 PLPPR3Q6T4P5 718 aa18.97■□□□□ 0.63
AC005840.3-201ENST00000541888 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.54
AC005840.3-201ENST00000541888 ADRA2BP18089 450 aa18.35■□□□□ 0.53
AC005840.3-201ENST00000541888 PIAS4Q8N2W9 510 aaPredicted RBP18.14■□□□□ 0.5
AC005840.3-201ENST00000541888 MSH5O43196 834 aa17.93■□□□□ 0.46
AC005840.3-201ENST00000541888 NISCHQ9Y2I1 1504 aa17.62■□□□□ 0.41
AC005840.3-201ENST00000541888 POTEDQ86YR6 584 aa16.92■□□□□ 0.3
AC005840.3-201ENST00000541888 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
AC005840.3-201ENST00000541888 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
AC005840.3-201ENST00000541888 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
AC005840.3-201ENST00000541888 DMRT2Q9Y5R5 561 aa16.54■□□□□ 0.24
AC005840.3-201ENST00000541888 CNKSR2Q8WXI2 1034 aa16.29■□□□□ 0.2
AC005840.3-201ENST00000541888 NCBP3Q53F19 620 aaKnown RBP16.13■□□□□ 0.17
AC005840.3-201ENST00000541888 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
AC005840.3-201ENST00000541888 RNF216Q9NWF9 866 aaPredicted RBP16.05■□□□□ 0.16
AC005840.3-201ENST00000541888 KCNA4P22459 653 aa15.95■□□□□ 0.14
AC005840.3-201ENST00000541888 NPM3O75607 178 aaKnown RBP15.92■□□□□ 0.14
AC005840.3-201ENST00000541888 DCAF8L1A6NGE4 600 aa15.83■□□□□ 0.12
AC005840.3-201ENST00000541888 DNAJC5BQ9UF47 199 aa15.5■□□□□ 0.07
AC005840.3-201ENST00000541888 RNF39Q9H2S5 420 aa15.36■□□□□ 0.05
AC005840.3-201ENST00000541888 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
AC005840.3-201ENST00000541888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.31■□□□□ 0.04
AC005840.3-201ENST00000541888 CACNB1Q02641 598 aaPredicted RBP15.18■□□□□ 0.02
AC005840.3-201ENST00000541888 C1QBPQ07021 282 aaKnown RBP15.14■□□□□ 0.01
AC005840.3-201ENST00000541888 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
AC005840.3-201ENST00000541888 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
AC005840.3-201ENST00000541888 U3KPZ7 1027 aaPredicted RBP15.03■□□□□ -0
AC005840.3-201ENST00000541888 ABCC9O60706 1549 aa14.81□□□□□ -0.04
AC005840.3-201ENST00000541888 DCAF8L2P0C7V8 631 aa14.81□□□□□ -0.04
AC005840.3-201ENST00000541888 ZCCHC6Q5VYS8 1495 aaKnown RBP14.78□□□□□ -0.04
AC005840.3-201ENST00000541888 FOXD4L1Q9NU39 408 aa14.73□□□□□ -0.05
AC005840.3-201ENST00000541888 SPINK5Q9NQ38 1064 aaPredicted RBP14.73□□□□□ -0.05
AC005840.3-201ENST00000541888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.71□□□□□ -0.06
AC005840.3-201ENST00000541888 HNRNPUL2Q1KMD3 747 aaKnown RBP14.71□□□□□ -0.06
AC005840.3-201ENST00000541888 MYCNP04198 464 aaPredicted RBP14.7□□□□□ -0.06
AC005840.3-201ENST00000541888 ZBTB22O15209 634 aa14.67□□□□□ -0.06
AC005840.3-201ENST00000541888 CAPN15O75808 1086 aa14.66□□□□□ -0.06
AC005840.3-201ENST00000541888 SAMD1Q6SPF0 538 aaPredicted RBP14.64□□□□□ -0.07
AC005840.3-201ENST00000541888 APLP2Q06481 763 aa14.61□□□□□ -0.07
AC005840.3-201ENST00000541888 SHROOM4Q9ULL8 1493 aa14.59□□□□□ -0.07
AC005840.3-201ENST00000541888 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.08
AC005840.3-201ENST00000541888 DSG3P32926 999 aa14.51□□□□□ -0.09
AC005840.3-201ENST00000541888 ZNF219Q9P2Y4 722 aaPredicted RBP14.48□□□□□ -0.09
AC005840.3-201ENST00000541888 DCAF1Q9Y4B6 1507 aa14.42□□□□□ -0.1
AC005840.3-201ENST00000541888 ATF5Q9Y2D1 282 aaPredicted RBP14.38□□□□□ -0.11
AC005840.3-201ENST00000541888 ABCB7O75027 752 aa14.36□□□□□ -0.11
AC005840.3-201ENST00000541888 CSRNP3Q8WYN3 585 aa14.33□□□□□ -0.12
AC005840.3-201ENST00000541888 SCRIBQ14160 1630 aa14.31□□□□□ -0.12
AC005840.3-201ENST00000541888 EHMT2Q96KQ7 1210 aa14.31□□□□□ -0.12
AC005840.3-201ENST00000541888 NACADO15069 1562 aa14.3□□□□□ -0.12
AC005840.3-201ENST00000541888 ATXN8OSP0DMR3 200 aa14.26□□□□□ -0.13
AC005840.3-201ENST00000541888 RB1CC1Q8TDY2 1594 aa14.25□□□□□ -0.13
AC005840.3-201ENST00000541888 MYO15BQ96JP2 1530 aa14.24□□□□□ -0.13
AC005840.3-201ENST00000541888 POLA2Q14181 598 aa14.22□□□□□ -0.13
AC005840.3-201ENST00000541888 UNC13AQ9UPW8 1703 aa14.14□□□□□ -0.15
AC005840.3-201ENST00000541888 PABPN1Q86U42 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
AC005840.3-201ENST00000541888 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
AC005840.3-201ENST00000541888 ZBTB12Q9Y330 459 aaPredicted RBP13.92□□□□□ -0.18
AC005840.3-201ENST00000541888 BICRAQ9NZM4 1560 aa13.91□□□□□ -0.18
AC005840.3-201ENST00000541888 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
AC005840.3-201ENST00000541888 RBM42Q9BTD8 480 aaKnown RBP13.8□□□□□ -0.2
AC005840.3-201ENST00000541888 FBLN2P98095 1184 aa13.74□□□□□ -0.21
AC005840.3-201ENST00000541888 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
AC005840.3-201ENST00000541888 MKRN4PQ13434 485 aaPredicted RBP13.72□□□□□ -0.21
AC005840.3-201ENST00000541888 MROH2BQ7Z745 1585 aa13.7□□□□□ -0.22
AC005840.3-201ENST00000541888 RSF1Q96T23 1441 aaPredicted RBP13.67□□□□□ -0.22
AC005840.3-201ENST00000541888 WIZO95785 1651 aa13.64□□□□□ -0.23
AC005840.3-201ENST00000541888 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
AC005840.3-201ENST00000541888 BAZ1AQ9NRL2 1556 aaPredicted RBP13.59□□□□□ -0.23
AC005840.3-201ENST00000541888 AKT1S1Q96B36 256 aa13.57□□□□□ -0.24
AC005840.3-201ENST00000541888 SPDYE2BA6NHP3 402 aa13.54□□□□□ -0.24
AC005840.3-201ENST00000541888 SPDYE6P0CI01 402 aa13.54□□□□□ -0.24
AC005840.3-201ENST00000541888 SPDYE2Q495Y8 402 aa13.54□□□□□ -0.24
AC005840.3-201ENST00000541888 EIF4G1Q04637 1599 aaKnown RBP13.48□□□□□ -0.25
AC005840.3-201ENST00000541888 REM2Q8IYK8 340 aaPredicted RBP13.46□□□□□ -0.25
AC005840.3-201ENST00000541888 ZNF692Q9BU19 519 aaPredicted RBP13.45□□□□□ -0.26
AC005840.3-201ENST00000541888 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
AC005840.3-201ENST00000541888 CHRDL2Q6WN34 429 aa13.37□□□□□ -0.27
AC005840.3-201ENST00000541888 ATAD2BQ9ULI0 1458 aa13.37□□□□□ -0.27
AC005840.3-201ENST00000541888 TOP2AP11388 1531 aaKnown RBP13.35□□□□□ -0.27
AC005840.3-201ENST00000541888 CC2D2AQ9P2K1 1620 aa13.35□□□□□ -0.27
AC005840.3-201ENST00000541888 PEG3Q9GZU2 1588 aa13.33□□□□□ -0.28
AC005840.3-201ENST00000541888 POTEHQ6S545 545 aa13.32□□□□□ -0.28
AC005840.3-201ENST00000541888 BAZ1BQ9UIG0 1483 aaKnown RBP13.32□□□□□ -0.28
AC005840.3-201ENST00000541888 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
AC005840.3-201ENST00000541888 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
AC005840.3-201ENST00000541888 CCDC88BA6NC98 1476 aa13.27□□□□□ -0.28
AC005840.3-201ENST00000541888 SPDYE4A6NLX3 237 aa13.24□□□□□ -0.29
AC005840.3-201ENST00000541888 SPDYE1Q8NFV5 336 aaPredicted RBP13.21□□□□□ -0.29
AC005840.3-201ENST00000541888 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
AC005840.3-201ENST00000541888 HMGXB3Q12766 1538 aa13.19□□□□□ -0.3
AC005840.3-201ENST00000541888 CLEC11AQ9Y240 323 aa13.18□□□□□ -0.3
AC005840.3-201ENST00000541888 PIP4P2Q8N4L2 257 aa13.15□□□□□ -0.3
AC005840.3-201ENST00000541888 FXR2P51116 673 aaKnown RBP eCLIP13.13□□□□□ -0.31
AC005840.3-201ENST00000541888 ABCC8Q09428 1581 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms