RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NISCHQ9Y2I1 1504 aa31.87■■■□□ 2.69
CLIP1-216ENST00000541410 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
CLIP1-216ENST00000541410 ZCCHC6Q5VYS8 1495 aaKnown RBP26.81■■□□□ 1.88
CLIP1-216ENST00000541410 SHROOM4Q9ULL8 1493 aa26.73■■□□□ 1.87
CLIP1-216ENST00000541410 DCAF8L2P0C7V8 631 aa26.71■■□□□ 1.87
CLIP1-216ENST00000541410 DCAF1Q9Y4B6 1507 aa26.11■■□□□ 1.77
CLIP1-216ENST00000541410 ABCC9O60706 1549 aa26.05■■□□□ 1.76
CLIP1-216ENST00000541410 SUPT5HO00267 1087 aaKnown RBP25.88■■□□□ 1.73
CLIP1-216ENST00000541410 SCRIBQ14160 1630 aa25.64■■□□□ 1.7
CLIP1-216ENST00000541410 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
CLIP1-216ENST00000541410 NACADO15069 1562 aa25.52■■□□□ 1.68
CLIP1-216ENST00000541410 RB1CC1Q8TDY2 1594 aa25.28■■□□□ 1.64
CLIP1-216ENST00000541410 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
CLIP1-216ENST00000541410 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.58
CLIP1-216ENST00000541410 CECR2Q9BXF3 1484 aa24.94■■□□□ 1.58
CLIP1-216ENST00000541410 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.56
CLIP1-216ENST00000541410 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
CLIP1-216ENST00000541410 MROH2BQ7Z745 1585 aa24.77■■□□□ 1.56
CLIP1-216ENST00000541410 WIZO95785 1651 aa24.63■■□□□ 1.53
CLIP1-216ENST00000541410 BICRAQ9NZM4 1560 aa24.61■■□□□ 1.53
CLIP1-216ENST00000541410 BAZ1AQ9NRL2 1556 aaPredicted RBP24.54■■□□□ 1.52
CLIP1-216ENST00000541410 SMARCA4P51532 1647 aa24.44■■□□□ 1.5
CLIP1-216ENST00000541410 TOP2AP11388 1531 aaKnown RBP24.18■■□□□ 1.46
CLIP1-216ENST00000541410 TRIM41Q8WV44 630 aa24.13■■□□□ 1.45
CLIP1-216ENST00000541410 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
CLIP1-216ENST00000541410 LOC105371045A0A1W2PR82 267 aa24.05■■□□□ 1.44
CLIP1-216ENST00000541410 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
CLIP1-216ENST00000541410 PEG3Q9GZU2 1588 aa23.97■■□□□ 1.43
CLIP1-216ENST00000541410 ATAD2BQ9ULI0 1458 aa23.96■■□□□ 1.43
CLIP1-216ENST00000541410 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.42
CLIP1-216ENST00000541410 EIF4G1Q04637 1599 aaKnown RBP23.93■■□□□ 1.42
CLIP1-216ENST00000541410 BAZ1BQ9UIG0 1483 aaKnown RBP23.88■■□□□ 1.41
CLIP1-216ENST00000541410 ABCC8Q09428 1581 aa23.83■■□□□ 1.41
CLIP1-216ENST00000541410 EHMT2Q96KQ7 1210 aa23.81■■□□□ 1.4
CLIP1-216ENST00000541410 NCAPD3P42695 1498 aa23.6■■□□□ 1.37
CLIP1-216ENST00000541410 HMGXB3Q12766 1538 aa23.55■■□□□ 1.36
CLIP1-216ENST00000541410 WRNQ14191 1432 aaPredicted RBP eCLIP23.47■■□□□ 1.35
CLIP1-216ENST00000541410 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.35
CLIP1-216ENST00000541410 SOGA1O94964 1423 aa23.44■■□□□ 1.34
CLIP1-216ENST00000541410 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
CLIP1-216ENST00000541410 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
CLIP1-216ENST00000541410 PCGF6Q9BYE7 350 aa23.32■■□□□ 1.32
CLIP1-216ENST00000541410 CFTRP13569 1480 aa23.23■■□□□ 1.31
CLIP1-216ENST00000541410 CSRNP3Q8WYN3 585 aa23.22■■□□□ 1.31
CLIP1-216ENST00000541410 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
CLIP1-216ENST00000541410 EEA1Q15075 1411 aa23.12■■□□□ 1.29
CLIP1-216ENST00000541410 CADPSQ9ULU8 1353 aa23.11■■□□□ 1.29
CLIP1-216ENST00000541410 CUX1P39880 1505 aa23.1■■□□□ 1.29
CLIP1-216ENST00000541410 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
CLIP1-216ENST00000541410 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
CLIP1-216ENST00000541410 BIVM-ERCC5R4GMW8 1640 aa23.09■■□□□ 1.29
CLIP1-216ENST00000541410 PRDM2Q13029 1718 aa23.06■■□□□ 1.28
CLIP1-216ENST00000541410 PPARGC1BQ86YN6 1023 aaKnown RBP23.06■■□□□ 1.28
CLIP1-216ENST00000541410 NESP48681 1621 aa23.01■■□□□ 1.27
CLIP1-216ENST00000541410 TRIM26Q12899 539 aaPredicted RBP22.98■■□□□ 1.27
CLIP1-216ENST00000541410 GOLGA3Q08378 1498 aa22.98■■□□□ 1.27
CLIP1-216ENST00000541410 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
CLIP1-216ENST00000541410 TNIKQ9UKE5 1360 aa22.96■■□□□ 1.27
CLIP1-216ENST00000541410 CEP164Q9UPV0 1460 aa22.91■■□□□ 1.26
CLIP1-216ENST00000541410 FANCD2Q9BXW9 1451 aa22.91■■□□□ 1.26
CLIP1-216ENST00000541410 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
CLIP1-216ENST00000541410 RANGAP1P46060 587 aaPredicted RBP22.89■■□□□ 1.26
CLIP1-216ENST00000541410 KIF21BO75037 1637 aa22.88■■□□□ 1.25
CLIP1-216ENST00000541410 TTBK1Q5TCY1 1321 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-216ENST00000541410 FGD5Q6ZNL6 1462 aa22.8■■□□□ 1.24
CLIP1-216ENST00000541410 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
CLIP1-216ENST00000541410 CUX2O14529 1486 aa22.76■■□□□ 1.23
CLIP1-216ENST00000541410 HRCP23327 699 aa22.76■■□□□ 1.23
CLIP1-216ENST00000541410 LAMC3Q9Y6N6 1575 aa22.73■■□□□ 1.23
CLIP1-216ENST00000541410 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
CLIP1-216ENST00000541410 CLIP1P30622 1438 aa22.7■■□□□ 1.22
CLIP1-216ENST00000541410 TOPBP1Q92547 1522 aa22.68■■□□□ 1.22
CLIP1-216ENST00000541410 RAD54L2Q9Y4B4 1467 aa22.68■■□□□ 1.22
CLIP1-216ENST00000541410 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
CLIP1-216ENST00000541410 ERICH3Q5RHP9 1530 aa22.63■■□□□ 1.21
CLIP1-216ENST00000541410 POLA1P09884 1462 aaPredicted RBP22.62■■□□□ 1.21
CLIP1-216ENST00000541410 KIF21AQ7Z4S6 1674 aa22.62■■□□□ 1.21
CLIP1-216ENST00000541410 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
CLIP1-216ENST00000541410 IGF1RP08069 1367 aa22.62■■□□□ 1.21
CLIP1-216ENST00000541410 PDS5BQ9NTI5 1447 aa22.59■■□□□ 1.21
CLIP1-216ENST00000541410 CARMIL1Q5VZK9 1371 aa22.52■■□□□ 1.2
CLIP1-216ENST00000541410 ABCA10Q8WWZ4 1543 aa22.49■■□□□ 1.19
CLIP1-216ENST00000541410 VPS8Q8N3P4 1428 aa22.49■■□□□ 1.19
CLIP1-216ENST00000541410 TDRD9Q8NDG6 1382 aaKnown RBP22.45■■□□□ 1.18
CLIP1-216ENST00000541410 ARAP1Q96P48 1450 aa22.42■■□□□ 1.18
CLIP1-216ENST00000541410 APLP2Q06481 763 aa22.4■■□□□ 1.18
CLIP1-216ENST00000541410 WDR97A6NE52 1622 aa22.38■■□□□ 1.17
CLIP1-216ENST00000541410 ARHGAP35Q9NRY4 1499 aa22.35■■□□□ 1.17
CLIP1-216ENST00000541410 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
CLIP1-216ENST00000541410 GAPVD1Q14C86 1478 aa22.3■■□□□ 1.16
CLIP1-216ENST00000541410 MRC2Q9UBG0 1479 aa22.3■■□□□ 1.16
CLIP1-216ENST00000541410 ABCA5Q8WWZ7 1642 aa22.29■■□□□ 1.16
CLIP1-216ENST00000541410 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
CLIP1-216ENST00000541410 TARBP1Q13395 1621 aaKnown RBP22.27■■□□□ 1.16
CLIP1-216ENST00000541410 CUL7Q14999 1698 aa22.26■■□□□ 1.15
CLIP1-216ENST00000541410 KANK4Q5T7N3 995 aaPredicted RBP22.24■■□□□ 1.15
CLIP1-216ENST00000541410 AQRO60306 1485 aaKnown RBP eCLIP22.23■■□□□ 1.15
CLIP1-216ENST00000541410 ERCC6Q03468 1493 aa22.22■■□□□ 1.15
CLIP1-216ENST00000541410 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
CLIP1-216ENST00000541410 CTTNBP2Q8WZ74 1663 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms