RNA–Protein interactions for RNA: ENST00000540550.6

TSFM-207, Transcript of Ts translation elongation factor, mitochondrial, humanhuman

TSL 2 BASIC

Gene TSFM, Length 1,935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSFM-207ENST00000540550 NISCHQ9Y2I1 1504 aa32.73■■■□□ 2.83
TSFM-207ENST00000540550 CCDC180Q9P1Z9 1646 aa28.41■■■□□ 2.14
TSFM-207ENST00000540550 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
TSFM-207ENST00000540550 SHROOM4Q9ULL8 1493 aa27.05■■□□□ 1.92
TSFM-207ENST00000540550 DCAF1Q9Y4B6 1507 aa27.03■■□□□ 1.92
TSFM-207ENST00000540550 DCAF8L2P0C7V8 631 aa27■■□□□ 1.91
TSFM-207ENST00000540550 ABCC9O60706 1549 aa26.61■■□□□ 1.85
TSFM-207ENST00000540550 MYO15BQ96JP2 1530 aa26.55■■□□□ 1.84
TSFM-207ENST00000540550 NACADO15069 1562 aa26.34■■□□□ 1.81
TSFM-207ENST00000540550 SCRIBQ14160 1630 aa26.22■■□□□ 1.79
TSFM-207ENST00000540550 SUPT5HO00267 1087 aaKnown RBP26.2■■□□□ 1.78
TSFM-207ENST00000540550 RB1CC1Q8TDY2 1594 aa26.06■■□□□ 1.76
TSFM-207ENST00000540550 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
TSFM-207ENST00000540550 RSF1Q96T23 1441 aaPredicted RBP25.52■■□□□ 1.68
TSFM-207ENST00000540550 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
TSFM-207ENST00000540550 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
TSFM-207ENST00000540550 BAZ1AQ9NRL2 1556 aaPredicted RBP25.27■■□□□ 1.64
TSFM-207ENST00000540550 BICRAQ9NZM4 1560 aa25.23■■□□□ 1.63
TSFM-207ENST00000540550 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
TSFM-207ENST00000540550 WIZO95785 1651 aa25.17■■□□□ 1.62
TSFM-207ENST00000540550 PABPN1Q86U42 306 aaKnown RBP eCLIP25.14■■□□□ 1.61
TSFM-207ENST00000540550 SMARCA4P51532 1647 aa25.12■■□□□ 1.61
TSFM-207ENST00000540550 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
TSFM-207ENST00000540550 PEG3Q9GZU2 1588 aa24.74■■□□□ 1.55
TSFM-207ENST00000540550 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
TSFM-207ENST00000540550 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
TSFM-207ENST00000540550 EIF4G1Q04637 1599 aaKnown RBP24.61■■□□□ 1.53
TSFM-207ENST00000540550 TRIM41Q8WV44 630 aa24.59■■□□□ 1.53
TSFM-207ENST00000540550 ATAD2BQ9ULI0 1458 aa24.57■■□□□ 1.52
TSFM-207ENST00000540550 BAZ1BQ9UIG0 1483 aaKnown RBP24.5■■□□□ 1.51
TSFM-207ENST00000540550 HMGXB3Q12766 1538 aa24.31■■□□□ 1.48
TSFM-207ENST00000540550 LOC105371045A0A1W2PR82 267 aa24.28■■□□□ 1.48
TSFM-207ENST00000540550 ABCC8Q09428 1581 aa24.28■■□□□ 1.48
TSFM-207ENST00000540550 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
TSFM-207ENST00000540550 FAM9AQ8IZU1 332 aaPredicted RBP24.18■■□□□ 1.46
TSFM-207ENST00000540550 CC2D2AQ9P2K1 1620 aa24.07■■□□□ 1.44
TSFM-207ENST00000540550 WRNQ14191 1432 aaPredicted RBP eCLIP24.04■■□□□ 1.44
TSFM-207ENST00000540550 SYNJ1O43426 1573 aa23.95■■□□□ 1.42
TSFM-207ENST00000540550 EEA1Q15075 1411 aa23.89■■□□□ 1.42
TSFM-207ENST00000540550 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
TSFM-207ENST00000540550 EHMT2Q96KQ7 1210 aa23.86■■□□□ 1.41
TSFM-207ENST00000540550 SOGA1O94964 1423 aa23.86■■□□□ 1.41
TSFM-207ENST00000540550 CFTRP13569 1480 aa23.85■■□□□ 1.41
TSFM-207ENST00000540550 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
TSFM-207ENST00000540550 BIVM-ERCC5R4GMW8 1640 aa23.8■■□□□ 1.4
TSFM-207ENST00000540550 RUSC2Q8N2Y8 1516 aa23.75■■□□□ 1.39
TSFM-207ENST00000540550 CSRNP3Q8WYN3 585 aa23.72■■□□□ 1.39
TSFM-207ENST00000540550 CADPSQ9ULU8 1353 aa23.69■■□□□ 1.38
TSFM-207ENST00000540550 CUX1P39880 1505 aa23.65■■□□□ 1.38
TSFM-207ENST00000540550 GOLGA3Q08378 1498 aa23.61■■□□□ 1.37
TSFM-207ENST00000540550 PCGF6Q9BYE7 350 aa23.61■■□□□ 1.37
TSFM-207ENST00000540550 KIF21BO75037 1637 aa23.59■■□□□ 1.37
TSFM-207ENST00000540550 TNIKQ9UKE5 1360 aa23.57■■□□□ 1.36
TSFM-207ENST00000540550 CEP164Q9UPV0 1460 aa23.56■■□□□ 1.36
TSFM-207ENST00000540550 UBTFP17480 764 aaKnown RBP23.51■■□□□ 1.35
TSFM-207ENST00000540550 CEP162Q5TB80 1403 aa23.5■■□□□ 1.35
TSFM-207ENST00000540550 TRIM26Q12899 539 aaPredicted RBP23.49■■□□□ 1.35
TSFM-207ENST00000540550 FANCD2Q9BXW9 1451 aa23.47■■□□□ 1.35
TSFM-207ENST00000540550 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
TSFM-207ENST00000540550 DNAJC5BQ9UF47 199 aa23.43■■□□□ 1.34
TSFM-207ENST00000540550 KIF27Q86VH2 1401 aa23.41■■□□□ 1.34
TSFM-207ENST00000540550 NESP48681 1621 aa23.41■■□□□ 1.34
TSFM-207ENST00000540550 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
TSFM-207ENST00000540550 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
TSFM-207ENST00000540550 FGD5Q6ZNL6 1462 aa23.35■■□□□ 1.33
TSFM-207ENST00000540550 DNMBPQ6XZF7 1577 aa23.35■■□□□ 1.33
TSFM-207ENST00000540550 PRXQ9BXM0 1461 aa23.31■■□□□ 1.32
TSFM-207ENST00000540550 CUX2O14529 1486 aa23.28■■□□□ 1.32
TSFM-207ENST00000540550 TOPBP1Q92547 1522 aa23.26■■□□□ 1.31
TSFM-207ENST00000540550 CLIP1P30622 1438 aa23.24■■□□□ 1.31
TSFM-207ENST00000540550 PDS5BQ9NTI5 1447 aa23.24■■□□□ 1.31
TSFM-207ENST00000540550 HRCP23327 699 aa23.21■■□□□ 1.31
TSFM-207ENST00000540550 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
TSFM-207ENST00000540550 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
TSFM-207ENST00000540550 POLA1P09884 1462 aaPredicted RBP23.16■■□□□ 1.3
TSFM-207ENST00000540550 URB2Q14146 1524 aaKnown RBP23.15■■□□□ 1.3
TSFM-207ENST00000540550 ABCA10Q8WWZ4 1543 aa23.12■■□□□ 1.29
TSFM-207ENST00000540550 IGF1RP08069 1367 aa23.12■■□□□ 1.29
TSFM-207ENST00000540550 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
TSFM-207ENST00000540550 VPS8Q8N3P4 1428 aa23.08■■□□□ 1.28
TSFM-207ENST00000540550 WDR97A6NE52 1622 aa23.06■■□□□ 1.28
TSFM-207ENST00000540550 RANGAP1P46060 587 aaPredicted RBP23.06■■□□□ 1.28
TSFM-207ENST00000540550 CARMIL1Q5VZK9 1371 aa23.04■■□□□ 1.28
TSFM-207ENST00000540550 CUL7Q14999 1698 aa22.99■■□□□ 1.27
TSFM-207ENST00000540550 TTBK1Q5TCY1 1321 aaPredicted RBP22.95■■□□□ 1.26
TSFM-207ENST00000540550 ARAP1Q96P48 1450 aa22.95■■□□□ 1.26
TSFM-207ENST00000540550 MRC2Q9UBG0 1479 aa22.94■■□□□ 1.26
TSFM-207ENST00000540550 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
TSFM-207ENST00000540550 APLP2Q06481 763 aa22.92■■□□□ 1.26
TSFM-207ENST00000540550 TARBP1Q13395 1621 aaKnown RBP22.88■■□□□ 1.25
TSFM-207ENST00000540550 ARHGAP35Q9NRY4 1499 aa22.87■■□□□ 1.25
TSFM-207ENST00000540550 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
TSFM-207ENST00000540550 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
TSFM-207ENST00000540550 CTTNBP2Q8WZ74 1663 aa22.83■■□□□ 1.25
TSFM-207ENST00000540550 ERCC6Q03468 1493 aa22.82■■□□□ 1.24
TSFM-207ENST00000540550 WDR62O43379 1518 aa22.8■■□□□ 1.24
TSFM-207ENST00000540550 PBRM1Q86U86 1689 aa22.77■■□□□ 1.24
TSFM-207ENST00000540550 ZEB1P37275 1124 aaPredicted RBP22.76■■□□□ 1.23
TSFM-207ENST00000540550 IFT140Q96RY7 1462 aa22.71■■□□□ 1.23
TSFM-207ENST00000540550 EFCAB5A4FU69 1503 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms