RNA–Protein interactions for RNA: ENST00000539429.1

GTF2H3-207, Transcript of general transcription factor IIH subunit 3, humanhuman

TSL 2

Gene GTF2H3, Length 858 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2H3-207ENST00000539429 AEBP2Q6ZN18 517 aaPredicted RBP28.73■■■□□ 2.19
GTF2H3-207ENST00000539429 CHIC1Q5VXU3 224 aa28.38■■■□□ 2.13
GTF2H3-207ENST00000539429 PHF23Q9BUL5 403 aaPredicted RBP24.99■■□□□ 1.59
GTF2H3-207ENST00000539429 SENP3Q9H4L4 574 aaPredicted RBP24.35■■□□□ 1.49
GTF2H3-207ENST00000539429 PLPPR3Q6T4P5 718 aa23.19■■□□□ 1.3
GTF2H3-207ENST00000539429 NISCHQ9Y2I1 1504 aa22.73■■□□□ 1.23
GTF2H3-207ENST00000539429 FOXD1Q16676 465 aa22.55■■□□□ 1.2
GTF2H3-207ENST00000539429 ADRA2BP18089 450 aa21.94■■□□□ 1.1
GTF2H3-207ENST00000539429 PPP6R1Q9UPN7 881 aa21.94■■□□□ 1.1
GTF2H3-207ENST00000539429 PIAS4Q8N2W9 510 aaPredicted RBP21.34■■□□□ 1.01
GTF2H3-207ENST00000539429 MSH5O43196 834 aa20.69■□□□□ 0.9
GTF2H3-207ENST00000539429 PPP4R3CPQ6ZMV5 832 aa20.47■□□□□ 0.87
GTF2H3-207ENST00000539429 KCNA4P22459 653 aa20.34■□□□□ 0.85
GTF2H3-207ENST00000539429 CCDC180Q9P1Z9 1646 aa20.28■□□□□ 0.84
GTF2H3-207ENST00000539429 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
GTF2H3-207ENST00000539429 NCBP3Q53F19 620 aaKnown RBP20.04■□□□□ 0.8
GTF2H3-207ENST00000539429 ABCC9O60706 1549 aa19.88■□□□□ 0.77
GTF2H3-207ENST00000539429 CNKSR2Q8WXI2 1034 aa19.84■□□□□ 0.77
GTF2H3-207ENST00000539429 MAPK8IP2Q13387 824 aaPredicted RBP19.81■□□□□ 0.76
GTF2H3-207ENST00000539429 NPM3O75607 178 aaKnown RBP19.73■□□□□ 0.75
GTF2H3-207ENST00000539429 DMRT2Q9Y5R5 561 aa19.48■□□□□ 0.71
GTF2H3-207ENST00000539429 SLC4A1APQ9BWU0 796 aaKnown RBP19.43■□□□□ 0.7
GTF2H3-207ENST00000539429 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
GTF2H3-207ENST00000539429 EHMT2Q96KQ7 1210 aa19.23■□□□□ 0.67
GTF2H3-207ENST00000539429 HOXD11P31277 338 aaPredicted RBP19.21■□□□□ 0.67
GTF2H3-207ENST00000539429 DCAF8L2P0C7V8 631 aa19.2■□□□□ 0.66
GTF2H3-207ENST00000539429 DNAJC5BQ9UF47 199 aa19.13■□□□□ 0.65
GTF2H3-207ENST00000539429 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
GTF2H3-207ENST00000539429 NACADO15069 1562 aa19.05■□□□□ 0.64
GTF2H3-207ENST00000539429 ZCCHC6Q5VYS8 1495 aaKnown RBP18.9■□□□□ 0.62
GTF2H3-207ENST00000539429 CSRNP3Q8WYN3 585 aa18.87■□□□□ 0.61
GTF2H3-207ENST00000539429 MYO15BQ96JP2 1530 aa18.84■□□□□ 0.61
GTF2H3-207ENST00000539429 DCAF1Q9Y4B6 1507 aa18.76■□□□□ 0.59
GTF2H3-207ENST00000539429 UNC13AQ9UPW8 1703 aa18.72■□□□□ 0.59
GTF2H3-207ENST00000539429 ZBTB22O15209 634 aa18.71■□□□□ 0.59
GTF2H3-207ENST00000539429 FOXD4L1Q9NU39 408 aa18.64■□□□□ 0.57
GTF2H3-207ENST00000539429 DCAF8L1A6NGE4 600 aa18.61■□□□□ 0.57
GTF2H3-207ENST00000539429 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.56
GTF2H3-207ENST00000539429 SCRIBQ14160 1630 aa18.54■□□□□ 0.56
GTF2H3-207ENST00000539429 SLC4A2P04920 1241 aa18.54■□□□□ 0.56
GTF2H3-207ENST00000539429 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
GTF2H3-207ENST00000539429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.31■□□□□ 0.52
GTF2H3-207ENST00000539429 POTEDQ86YR6 584 aa18.28■□□□□ 0.52
GTF2H3-207ENST00000539429 SHROOM4Q9ULL8 1493 aa18.25■□□□□ 0.51
GTF2H3-207ENST00000539429 MYCNP04198 464 aaPredicted RBP18.23■□□□□ 0.51
GTF2H3-207ENST00000539429 U3KPZ7 1027 aaPredicted RBP18.03■□□□□ 0.48
GTF2H3-207ENST00000539429 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
GTF2H3-207ENST00000539429 ATXN8OSP0DMR3 200 aa17.98■□□□□ 0.47
GTF2H3-207ENST00000539429 CC2D2AQ9P2K1 1620 aa17.98■□□□□ 0.47
GTF2H3-207ENST00000539429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.94■□□□□ 0.46
GTF2H3-207ENST00000539429 HNRNPUL2Q1KMD3 747 aaKnown RBP17.94■□□□□ 0.46
GTF2H3-207ENST00000539429 SAMD1Q6SPF0 538 aaPredicted RBP17.89■□□□□ 0.45
GTF2H3-207ENST00000539429 CECR2Q9BXF3 1484 aa17.84■□□□□ 0.45
GTF2H3-207ENST00000539429 RNF39Q9H2S5 420 aa17.75■□□□□ 0.43
GTF2H3-207ENST00000539429 ATF5Q9Y2D1 282 aaPredicted RBP17.7■□□□□ 0.42
GTF2H3-207ENST00000539429 SMARCA4P51532 1647 aa17.69■□□□□ 0.42
GTF2H3-207ENST00000539429 APLP2Q06481 763 aa17.68■□□□□ 0.42
GTF2H3-207ENST00000539429 BAZ1AQ9NRL2 1556 aaPredicted RBP17.66■□□□□ 0.42
GTF2H3-207ENST00000539429 SMARCA2P51531 1590 aa17.58■□□□□ 0.41
GTF2H3-207ENST00000539429 C1QBPQ07021 282 aaKnown RBP17.57■□□□□ 0.4
GTF2H3-207ENST00000539429 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
GTF2H3-207ENST00000539429 MROH2BQ7Z745 1585 aa17.53■□□□□ 0.4
GTF2H3-207ENST00000539429 NCAPD3P42695 1498 aa17.52■□□□□ 0.4
GTF2H3-207ENST00000539429 BAZ1BQ9UIG0 1483 aaKnown RBP17.47■□□□□ 0.39
GTF2H3-207ENST00000539429 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
GTF2H3-207ENST00000539429 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
GTF2H3-207ENST00000539429 SPINK5Q9NQ38 1064 aaPredicted RBP17.43■□□□□ 0.38
GTF2H3-207ENST00000539429 ZNF219Q9P2Y4 722 aaPredicted RBP17.42■□□□□ 0.38
GTF2H3-207ENST00000539429 WIZO95785 1651 aa17.4■□□□□ 0.38
GTF2H3-207ENST00000539429 CAPN15O75808 1086 aa17.36■□□□□ 0.37
GTF2H3-207ENST00000539429 TRHP20396 242 aaPredicted RBP17.35■□□□□ 0.37
GTF2H3-207ENST00000539429 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
GTF2H3-207ENST00000539429 ERCC6Q03468 1493 aa17.19■□□□□ 0.34
GTF2H3-207ENST00000539429 NESP48681 1621 aa17.17■□□□□ 0.34
GTF2H3-207ENST00000539429 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
GTF2H3-207ENST00000539429 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
GTF2H3-207ENST00000539429 POLA2Q14181 598 aa17.14■□□□□ 0.33
GTF2H3-207ENST00000539429 CACNB1Q02641 598 aaPredicted RBP17.06■□□□□ 0.32
GTF2H3-207ENST00000539429 CADPSQ9ULU8 1353 aa17.04■□□□□ 0.32
GTF2H3-207ENST00000539429 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
GTF2H3-207ENST00000539429 ABCB7O75027 752 aa17.04■□□□□ 0.32
GTF2H3-207ENST00000539429 FKBP8Q14318 412 aa17.04■□□□□ 0.32
GTF2H3-207ENST00000539429 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
GTF2H3-207ENST00000539429 DSG3P32926 999 aa17■□□□□ 0.31
GTF2H3-207ENST00000539429 SUPT5HO00267 1087 aaKnown RBP16.99■□□□□ 0.31
GTF2H3-207ENST00000539429 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
GTF2H3-207ENST00000539429 FBLN2P98095 1184 aa16.95■□□□□ 0.3
GTF2H3-207ENST00000539429 MKRN4PQ13434 485 aaPredicted RBP16.95■□□□□ 0.3
GTF2H3-207ENST00000539429 CUX2O14529 1486 aa16.93■□□□□ 0.3
GTF2H3-207ENST00000539429 PRDM2Q13029 1718 aa16.93■□□□□ 0.3
GTF2H3-207ENST00000539429 CFTRP13569 1480 aa16.91■□□□□ 0.3
GTF2H3-207ENST00000539429 THOC2Q8NI27 1593 aaKnown RBP16.9■□□□□ 0.3
GTF2H3-207ENST00000539429 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
GTF2H3-207ENST00000539429 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.29
GTF2H3-207ENST00000539429 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
GTF2H3-207ENST00000539429 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
GTF2H3-207ENST00000539429 WDR62O43379 1518 aa16.75■□□□□ 0.27
GTF2H3-207ENST00000539429 SPDYE4A6NLX3 237 aa16.73■□□□□ 0.27
GTF2H3-207ENST00000539429 URB2Q14146 1524 aaKnown RBP16.68■□□□□ 0.26
GTF2H3-207ENST00000539429 ABCC8Q09428 1581 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms