RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 DCAF8L2P0C7V8 631 aa16.75■□□□□ 0.27
COL4A6-208ENST00000538570 MYT1Q01538 1121 aa16.26■□□□□ 0.19
COL4A6-208ENST00000538570 PELP1Q8IZL8 1130 aaKnown RBP16.12■□□□□ 0.17
COL4A6-208ENST00000538570 NISCHQ9Y2I1 1504 aa16.01■□□□□ 0.15
COL4A6-208ENST00000538570 SUPT5HO00267 1087 aaKnown RBP15.98■□□□□ 0.15
COL4A6-208ENST00000538570 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
COL4A6-208ENST00000538570 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
COL4A6-208ENST00000538570 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
COL4A6-208ENST00000538570 APLP2Q06481 763 aa15.5■□□□□ 0.07
COL4A6-208ENST00000538570 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
COL4A6-208ENST00000538570 CENPBP07199 599 aaPredicted RBP15.29■□□□□ 0.04
COL4A6-208ENST00000538570 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
COL4A6-208ENST00000538570 FAM9AQ8IZU1 332 aaPredicted RBP15.22■□□□□ 0.03
COL4A6-208ENST00000538570 PCGF6Q9BYE7 350 aa15.15■□□□□ 0.02
COL4A6-208ENST00000538570 ZEB1P37275 1124 aaPredicted RBP15.08■□□□□ 0.01
COL4A6-208ENST00000538570 NEFLP07196 543 aa14.95□□□□□ -0.02
COL4A6-208ENST00000538570 RANGAP1P46060 587 aaPredicted RBP14.91□□□□□ -0.02
COL4A6-208ENST00000538570 ATP1B4Q9UN42 357 aaPredicted RBP14.85□□□□□ -0.03
COL4A6-208ENST00000538570 YTHDC1Q96MU7 727 aaKnown RBP14.83□□□□□ -0.04
COL4A6-208ENST00000538570 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
COL4A6-208ENST00000538570 UBTFP17480 764 aaKnown RBP14.71□□□□□ -0.05
COL4A6-208ENST00000538570 DAXXQ9UER7 740 aaPredicted RBP14.63□□□□□ -0.07
COL4A6-208ENST00000538570 HRCP23327 699 aa14.53□□□□□ -0.08
COL4A6-208ENST00000538570 PPARGC1BQ86YN6 1023 aaKnown RBP14.46□□□□□ -0.09
COL4A6-208ENST00000538570 TRIM26Q12899 539 aaPredicted RBP14.45□□□□□ -0.1
COL4A6-208ENST00000538570 POLR3GLQ9BT43 218 aa14.41□□□□□ -0.1
COL4A6-208ENST00000538570 RTL5Q5HYW3 569 aaPredicted RBP14.39□□□□□ -0.11
COL4A6-208ENST00000538570 MYT1LQ9UL68 1186 aa14.32□□□□□ -0.12
COL4A6-208ENST00000538570 ITGAEP38570 1179 aa14.32□□□□□ -0.12
COL4A6-208ENST00000538570 ZNF316A6NFI3 1004 aaPredicted RBP14.27□□□□□ -0.12
COL4A6-208ENST00000538570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.26□□□□□ -0.13
COL4A6-208ENST00000538570 HNRNPUL2Q1KMD3 747 aaKnown RBP14.26□□□□□ -0.13
COL4A6-208ENST00000538570 GLIPR1L2Q4G1C9 344 aa14.26□□□□□ -0.13
COL4A6-208ENST00000538570 EIF5BO60841 1220 aaKnown RBP14.26□□□□□ -0.13
COL4A6-208ENST00000538570 CNGB1Q14028 1251 aaPredicted RBP14.24□□□□□ -0.13
COL4A6-208ENST00000538570 CLSPNQ9HAW4 1339 aa14.2□□□□□ -0.14
COL4A6-208ENST00000538570 SLC4A1APQ9BWU0 796 aaKnown RBP14.15□□□□□ -0.14
COL4A6-208ENST00000538570 GTF3C3Q9Y5Q9 886 aa14.15□□□□□ -0.14
COL4A6-208ENST00000538570 DIEXFQ68CQ4 756 aaKnown RBP14.08□□□□□ -0.15
COL4A6-208ENST00000538570 CHIC1Q5VXU3 224 aa14.06□□□□□ -0.16
COL4A6-208ENST00000538570 LOC105371045A0A1W2PR82 267 aa14.06□□□□□ -0.16
COL4A6-208ENST00000538570 BCANQ96GW7 911 aa13.99□□□□□ -0.17
COL4A6-208ENST00000538570 CDK11AQ9UQ88 783 aaPredicted RBP13.93□□□□□ -0.18
COL4A6-208ENST00000538570 FAM50AQ14320 339 aaKnown RBP13.93□□□□□ -0.18
COL4A6-208ENST00000538570 ZBTB47Q9UFB7 747 aaPredicted RBP13.92□□□□□ -0.18
COL4A6-208ENST00000538570 TRIM52Q96A61 297 aa13.9□□□□□ -0.18
COL4A6-208ENST00000538570 ACIN1Q9UKV3 1341 aaKnown RBP13.87□□□□□ -0.19
COL4A6-208ENST00000538570 ANP32CO43423 234 aa13.87□□□□□ -0.19
COL4A6-208ENST00000538570 NEUROD1Q13562 356 aa13.86□□□□□ -0.19
COL4A6-208ENST00000538570 CANXP27824 592 aaKnown RBP13.79□□□□□ -0.2
COL4A6-208ENST00000538570 ABCC9O60706 1549 aa13.77□□□□□ -0.2
COL4A6-208ENST00000538570 ZNF326Q5BKZ1 582 aaKnown RBP13.76□□□□□ -0.21
COL4A6-208ENST00000538570 ANP32AP39687 249 aaKnown RBP13.73□□□□□ -0.21
COL4A6-208ENST00000538570 BCL11AQ9H165 835 aa13.73□□□□□ -0.21
COL4A6-208ENST00000538570 SLC24A1O60721 1099 aa13.71□□□□□ -0.22
COL4A6-208ENST00000538570 NEFMP07197 916 aa13.69□□□□□ -0.22
COL4A6-208ENST00000538570 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL4A6-208ENST00000538570 ANP32BQ92688 251 aaKnown RBP13.63□□□□□ -0.23
COL4A6-208ENST00000538570 NPM2Q86SE8 214 aaKnown RBP13.62□□□□□ -0.23
COL4A6-208ENST00000538570 NBR1Q14596 966 aa13.55□□□□□ -0.24
COL4A6-208ENST00000538570 SCAF1Q9H7N4 1312 aaKnown RBP13.54□□□□□ -0.24
COL4A6-208ENST00000538570 HSP90AA1P07900 732 aaKnown RBP13.53□□□□□ -0.24
COL4A6-208ENST00000538570 FKBP8Q14318 412 aa13.5□□□□□ -0.25
COL4A6-208ENST00000538570 UPF2Q9HAU5 1272 aaKnown RBP13.5□□□□□ -0.25
COL4A6-208ENST00000538570 TNNT2P45379 298 aaPredicted RBP13.49□□□□□ -0.25
COL4A6-208ENST00000538570 ANP32EQ9BTT0 268 aa13.48□□□□□ -0.25
COL4A6-208ENST00000538570 FBLN2P98095 1184 aa13.47□□□□□ -0.25
COL4A6-208ENST00000538570 CDK11BP21127 795 aaKnown RBP13.44□□□□□ -0.26
COL4A6-208ENST00000538570 HNRNPUQ00839 825 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL4A6-208ENST00000538570 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
COL4A6-208ENST00000538570 ZNF777Q9ULD5 760 aaPredicted RBP13.39□□□□□ -0.27
COL4A6-208ENST00000538570 ARID3CA6NKF2 412 aa13.38□□□□□ -0.27
COL4A6-208ENST00000538570 AMER1Q5JTC6 1135 aaPredicted RBP13.38□□□□□ -0.27
COL4A6-208ENST00000538570 RTN4Q9NQC3 1192 aaKnown RBP13.37□□□□□ -0.27
COL4A6-208ENST00000538570 TONSLQ96HA7 1378 aa13.36□□□□□ -0.27
COL4A6-208ENST00000538570 ARXQ96QS3 562 aa13.35□□□□□ -0.27
COL4A6-208ENST00000538570 FAM9BQ8IZU0 186 aa13.35□□□□□ -0.27
COL4A6-208ENST00000538570 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-208ENST00000538570 CCDC136Q96JN2 1154 aa13.33□□□□□ -0.28
COL4A6-208ENST00000538570 CSRNP3Q8WYN3 585 aa13.3□□□□□ -0.28
COL4A6-208ENST00000538570 ESF1Q9H501 851 aaKnown RBP13.3□□□□□ -0.28
COL4A6-208ENST00000538570 SALL2Q9Y467 1007 aaPredicted RBP13.29□□□□□ -0.28
COL4A6-208ENST00000538570 DDX10Q13206 875 aaKnown RBP13.29□□□□□ -0.28
COL4A6-208ENST00000538570 CHGAP10645 457 aaKnown RBP13.29□□□□□ -0.28
COL4A6-208ENST00000538570 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
COL4A6-208ENST00000538570 TMC1Q8TDI8 760 aa13.27□□□□□ -0.29
COL4A6-208ENST00000538570 NAP1L5Q96NT1 182 aaPredicted RBP13.25□□□□□ -0.29
COL4A6-208ENST00000538570 ZCCHC6Q5VYS8 1495 aaKnown RBP13.25□□□□□ -0.29
COL4A6-208ENST00000538570 WDR43Q15061 677 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL4A6-208ENST00000538570 SCRIBQ14160 1630 aa13.23□□□□□ -0.29
COL4A6-208ENST00000538570 TRIM44Q96DX7 344 aaPredicted RBP13.21□□□□□ -0.3
COL4A6-208ENST00000538570 MYH16Q9H6N6 1097 aa13.2□□□□□ -0.3
COL4A6-208ENST00000538570 NCLP19338 710 aaKnown RBP13.19□□□□□ -0.3
COL4A6-208ENST00000538570 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.19□□□□□ -0.3
COL4A6-208ENST00000538570 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
COL4A6-208ENST00000538570 PLPPR3Q6T4P5 718 aa13.17□□□□□ -0.3
COL4A6-208ENST00000538570 DDRGK1Q96HY6 314 aa13.17□□□□□ -0.3
COL4A6-208ENST00000538570 ERICH6BQ5W0A0 696 aa13.15□□□□□ -0.3
COL4A6-208ENST00000538570 BECN1Q14457 450 aa13.15□□□□□ -0.3
COL4A6-208ENST00000538570 PRKCSHP14314 528 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms