RNA–Protein interactions for RNA: ENST00000536805.5

PTCD2-211, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 2 BASIC

Gene PTCD2, Length 1,911 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-211ENST00000536805 NISCHQ9Y2I1 1504 aa24.36■■□□□ 1.49
PTCD2-211ENST00000536805 SHROOM4Q9ULL8 1493 aa20.76■□□□□ 0.91
PTCD2-211ENST00000536805 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
PTCD2-211ENST00000536805 CCDC180Q9P1Z9 1646 aa20.68■□□□□ 0.9
PTCD2-211ENST00000536805 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
PTCD2-211ENST00000536805 MYO15BQ96JP2 1530 aa20.23■□□□□ 0.83
PTCD2-211ENST00000536805 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
PTCD2-211ENST00000536805 HRCP23327 699 aa20.17■□□□□ 0.82
PTCD2-211ENST00000536805 DCAF1Q9Y4B6 1507 aa20.1■□□□□ 0.81
PTCD2-211ENST00000536805 PCGF6Q9BYE7 350 aa19.82■□□□□ 0.76
PTCD2-211ENST00000536805 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
PTCD2-211ENST00000536805 ABCC9O60706 1549 aa19.63■□□□□ 0.73
PTCD2-211ENST00000536805 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
PTCD2-211ENST00000536805 LOC105371045A0A1W2PR82 267 aa19.51■□□□□ 0.71
PTCD2-211ENST00000536805 TRIM26Q12899 539 aaPredicted RBP19.49■□□□□ 0.71
PTCD2-211ENST00000536805 RSF1Q96T23 1441 aaPredicted RBP19.35■□□□□ 0.69
PTCD2-211ENST00000536805 ZEB1P37275 1124 aaPredicted RBP19.29■□□□□ 0.68
PTCD2-211ENST00000536805 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
PTCD2-211ENST00000536805 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
PTCD2-211ENST00000536805 TRIM41Q8WV44 630 aa19.15■□□□□ 0.66
PTCD2-211ENST00000536805 NACADO15069 1562 aa18.99■□□□□ 0.63
PTCD2-211ENST00000536805 PELP1Q8IZL8 1130 aaKnown RBP18.93■□□□□ 0.62
PTCD2-211ENST00000536805 MROH2BQ7Z745 1585 aa18.9■□□□□ 0.62
PTCD2-211ENST00000536805 FAM9AQ8IZU1 332 aaPredicted RBP18.89■□□□□ 0.61
PTCD2-211ENST00000536805 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
PTCD2-211ENST00000536805 BAZ1AQ9NRL2 1556 aaPredicted RBP18.84■□□□□ 0.61
PTCD2-211ENST00000536805 EIF4G1Q04637 1599 aaKnown RBP18.84■□□□□ 0.61
PTCD2-211ENST00000536805 WIZO95785 1651 aa18.82■□□□□ 0.6
PTCD2-211ENST00000536805 SCAF1Q9H7N4 1312 aaKnown RBP18.73■□□□□ 0.59
PTCD2-211ENST00000536805 WRNQ14191 1432 aaPredicted RBP eCLIP18.64■□□□□ 0.58
PTCD2-211ENST00000536805 EHMT2Q96KQ7 1210 aa18.62■□□□□ 0.57
PTCD2-211ENST00000536805 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
PTCD2-211ENST00000536805 CCER1Q8TC90 406 aaPredicted RBP18.55■□□□□ 0.56
PTCD2-211ENST00000536805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.53■□□□□ 0.56
PTCD2-211ENST00000536805 SMARCA4P51532 1647 aa18.51■□□□□ 0.55
PTCD2-211ENST00000536805 ACIN1Q9UKV3 1341 aaKnown RBP18.5■□□□□ 0.55
PTCD2-211ENST00000536805 SMARCA2P51531 1590 aa18.49■□□□□ 0.55
PTCD2-211ENST00000536805 EEA1Q15075 1411 aa18.48■□□□□ 0.55
PTCD2-211ENST00000536805 CEP162Q5TB80 1403 aa18.48■□□□□ 0.55
PTCD2-211ENST00000536805 ABCC8Q09428 1581 aa18.48■□□□□ 0.55
PTCD2-211ENST00000536805 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
PTCD2-211ENST00000536805 TNIKQ9UKE5 1360 aa18.46■□□□□ 0.55
PTCD2-211ENST00000536805 DNAJC5BQ9UF47 199 aa18.4■□□□□ 0.54
PTCD2-211ENST00000536805 DIEXFQ68CQ4 756 aaKnown RBP18.39■□□□□ 0.53
PTCD2-211ENST00000536805 NEUROD1Q13562 356 aa18.38■□□□□ 0.53
PTCD2-211ENST00000536805 CENPBP07199 599 aaPredicted RBP18.37■□□□□ 0.53
PTCD2-211ENST00000536805 SOGA1O94964 1423 aa18.35■□□□□ 0.53
PTCD2-211ENST00000536805 GOLGA3Q08378 1498 aa18.32■□□□□ 0.52
PTCD2-211ENST00000536805 UNC13AQ9UPW8 1703 aa18.31■□□□□ 0.52
PTCD2-211ENST00000536805 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
PTCD2-211ENST00000536805 GTF3C3Q9Y5Q9 886 aa18.23■□□□□ 0.51
PTCD2-211ENST00000536805 RUSC2Q8N2Y8 1516 aa18.22■□□□□ 0.51
PTCD2-211ENST00000536805 KIF21BO75037 1637 aa18.22■□□□□ 0.51
PTCD2-211ENST00000536805 ZNF316A6NFI3 1004 aaPredicted RBP18.21■□□□□ 0.51
PTCD2-211ENST00000536805 PEG3Q9GZU2 1588 aa18.2■□□□□ 0.5
PTCD2-211ENST00000536805 CEP164Q9UPV0 1460 aa18.18■□□□□ 0.5
PTCD2-211ENST00000536805 UBTFP17480 764 aaKnown RBP18.17■□□□□ 0.5
PTCD2-211ENST00000536805 TTBK1Q5TCY1 1321 aaPredicted RBP18.16■□□□□ 0.5
PTCD2-211ENST00000536805 MYT1Q01538 1121 aa18.11■□□□□ 0.49
PTCD2-211ENST00000536805 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
PTCD2-211ENST00000536805 SYNJ1O43426 1573 aa18.09■□□□□ 0.49
PTCD2-211ENST00000536805 VPS8Q8N3P4 1428 aa18.07■□□□□ 0.48
PTCD2-211ENST00000536805 CLIP1P30622 1438 aa18.06■□□□□ 0.48
PTCD2-211ENST00000536805 BICRAQ9NZM4 1560 aa18.05■□□□□ 0.48
PTCD2-211ENST00000536805 HNRNPUL2Q1KMD3 747 aaKnown RBP17.93■□□□□ 0.46
PTCD2-211ENST00000536805 RAPGEF2Q9Y4G8 1499 aa17.92■□□□□ 0.46
PTCD2-211ENST00000536805 MIER1Q8N108 512 aa17.92■□□□□ 0.46
PTCD2-211ENST00000536805 DNAJC5Q9H3Z4 198 aa17.91■□□□□ 0.46
PTCD2-211ENST00000536805 CLSPNQ9HAW4 1339 aa17.91■□□□□ 0.46
PTCD2-211ENST00000536805 ATAD2BQ9ULI0 1458 aa17.9■□□□□ 0.46
PTCD2-211ENST00000536805 TOP2BQ02880 1626 aa17.9■□□□□ 0.46
PTCD2-211ENST00000536805 APLP2Q06481 763 aa17.89■□□□□ 0.45
PTCD2-211ENST00000536805 ERICH3Q5RHP9 1530 aa17.88■□□□□ 0.45
PTCD2-211ENST00000536805 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
PTCD2-211ENST00000536805 BIVM-ERCC5R4GMW8 1640 aa17.86■□□□□ 0.45
PTCD2-211ENST00000536805 PABPN1Q86U42 306 aaKnown RBP eCLIP17.8■□□□□ 0.44
PTCD2-211ENST00000536805 PRXQ9BXM0 1461 aa17.78■□□□□ 0.44
PTCD2-211ENST00000536805 DHX57Q6P158 1386 aaKnown RBP17.77■□□□□ 0.44
PTCD2-211ENST00000536805 ARAP1Q96P48 1450 aa17.77■□□□□ 0.43
PTCD2-211ENST00000536805 CUX2O14529 1486 aa17.73■□□□□ 0.43
PTCD2-211ENST00000536805 RRBP1Q9P2E9 1410 aaKnown RBP17.73■□□□□ 0.43
PTCD2-211ENST00000536805 HMGXB3Q12766 1538 aa17.62■□□□□ 0.41
PTCD2-211ENST00000536805 KIF27Q86VH2 1401 aa17.6■□□□□ 0.41
PTCD2-211ENST00000536805 CUX1P39880 1505 aa17.6■□□□□ 0.41
PTCD2-211ENST00000536805 RANGAP1P46060 587 aaPredicted RBP17.58■□□□□ 0.4
PTCD2-211ENST00000536805 KANK4Q5T7N3 995 aaPredicted RBP17.58■□□□□ 0.4
PTCD2-211ENST00000536805 CCNB3Q8WWL7 1395 aa17.57■□□□□ 0.4
PTCD2-211ENST00000536805 ARHGAP35Q9NRY4 1499 aa17.54■□□□□ 0.4
PTCD2-211ENST00000536805 SUPT16HQ9Y5B9 1047 aaKnown RBP17.53■□□□□ 0.4
PTCD2-211ENST00000536805 MAP3K1Q13233 1512 aa17.53■□□□□ 0.4
PTCD2-211ENST00000536805 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
PTCD2-211ENST00000536805 CFTRP13569 1480 aa17.47■□□□□ 0.39
PTCD2-211ENST00000536805 PRDM2Q13029 1718 aa17.47■□□□□ 0.39
PTCD2-211ENST00000536805 MAPKBP1O60336 1514 aa17.47■□□□□ 0.39
PTCD2-211ENST00000536805 TIAM1Q13009 1591 aa17.46■□□□□ 0.39
PTCD2-211ENST00000536805 RAB3GAP2Q9H2M9 1393 aa17.42■□□□□ 0.38
PTCD2-211ENST00000536805 SETD5Q9C0A6 1442 aa17.38■□□□□ 0.37
PTCD2-211ENST00000536805 CFAP43Q8NDM7 1665 aa17.37■□□□□ 0.37
PTCD2-211ENST00000536805 LRRC9Q6ZRR7 1453 aa17.36■□□□□ 0.37
PTCD2-211ENST00000536805 IGF1RP08069 1367 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms