RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 AEBP2Q6ZN18 517 aaPredicted RBP25.52■■□□□ 1.68
YBX3-205ENST00000536107 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
YBX3-205ENST00000536107 SENP3Q9H4L4 574 aaPredicted RBP21.89■■□□□ 1.09
YBX3-205ENST00000536107 PHF23Q9BUL5 403 aaPredicted RBP21.52■■□□□ 1.04
YBX3-205ENST00000536107 FOXD1Q16676 465 aa20.43■□□□□ 0.86
YBX3-205ENST00000536107 POTEDQ86YR6 584 aa19.63■□□□□ 0.73
YBX3-205ENST00000536107 MSH5O43196 834 aa19.33■□□□□ 0.68
YBX3-205ENST00000536107 PIAS4Q8N2W9 510 aaPredicted RBP18.96■□□□□ 0.63
YBX3-205ENST00000536107 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
YBX3-205ENST00000536107 PPP6R1Q9UPN7 881 aa18.73■□□□□ 0.59
YBX3-205ENST00000536107 ADRA2BP18089 450 aa18.62■□□□□ 0.57
YBX3-205ENST00000536107 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
YBX3-205ENST00000536107 MAPK8IP2Q13387 824 aaPredicted RBP17.24■□□□□ 0.35
YBX3-205ENST00000536107 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
YBX3-205ENST00000536107 CACNB1Q02641 598 aaPredicted RBP16.83■□□□□ 0.28
YBX3-205ENST00000536107 DCAF8L1A6NGE4 600 aa16.53■□□□□ 0.24
YBX3-205ENST00000536107 HOXD11P31277 338 aaPredicted RBP16.47■□□□□ 0.23
YBX3-205ENST00000536107 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
YBX3-205ENST00000536107 PPP4R3CPQ6ZMV5 832 aa16.42■□□□□ 0.22
YBX3-205ENST00000536107 CNKSR2Q8WXI2 1034 aa16.24■□□□□ 0.19
YBX3-205ENST00000536107 RNF216Q9NWF9 866 aaPredicted RBP16.22■□□□□ 0.19
YBX3-205ENST00000536107 C1QBPQ07021 282 aaKnown RBP16.2■□□□□ 0.18
YBX3-205ENST00000536107 DNAJC5BQ9UF47 199 aa16.06■□□□□ 0.16
YBX3-205ENST00000536107 NCBP3Q53F19 620 aaKnown RBP15.67■□□□□ 0.1
YBX3-205ENST00000536107 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.65■□□□□ 0.1
YBX3-205ENST00000536107 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
YBX3-205ENST00000536107 POTEHQ6S545 545 aa15.29■□□□□ 0.04
YBX3-205ENST00000536107 U3KPZ7 1027 aaPredicted RBP15.28■□□□□ 0.04
YBX3-205ENST00000536107 DSG3P32926 999 aa15.23■□□□□ 0.03
YBX3-205ENST00000536107 CAPN15O75808 1086 aa15.18■□□□□ 0.02
YBX3-205ENST00000536107 SPINK5Q9NQ38 1064 aaPredicted RBP15.18■□□□□ 0.02
YBX3-205ENST00000536107 SLC4A2P04920 1241 aa14.85□□□□□ -0.03
YBX3-205ENST00000536107 APLP2Q06481 763 aa14.85□□□□□ -0.03
YBX3-205ENST00000536107 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
YBX3-205ENST00000536107 ZNF219Q9P2Y4 722 aaPredicted RBP14.82□□□□□ -0.04
YBX3-205ENST00000536107 ABCB7O75027 752 aa14.77□□□□□ -0.05
YBX3-205ENST00000536107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.73□□□□□ -0.05
YBX3-205ENST00000536107 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
YBX3-205ENST00000536107 KCNA4P22459 653 aa14.7□□□□□ -0.06
YBX3-205ENST00000536107 SAMD1Q6SPF0 538 aaPredicted RBP14.62□□□□□ -0.07
YBX3-205ENST00000536107 RBM42Q9BTD8 480 aaKnown RBP14.57□□□□□ -0.08
YBX3-205ENST00000536107 CHRDL2Q6WN34 429 aa14.41□□□□□ -0.1
YBX3-205ENST00000536107 POLA2Q14181 598 aa14.33□□□□□ -0.12
YBX3-205ENST00000536107 MYCNP04198 464 aaPredicted RBP14.3□□□□□ -0.12
YBX3-205ENST00000536107 AKT1S1Q96B36 256 aa14.13□□□□□ -0.15
YBX3-205ENST00000536107 SP7Q8TDD2 431 aaPredicted RBP14.12□□□□□ -0.15
YBX3-205ENST00000536107 ZBTB12Q9Y330 459 aaPredicted RBP14.05□□□□□ -0.16
YBX3-205ENST00000536107 REM2Q8IYK8 340 aaPredicted RBP13.98□□□□□ -0.17
YBX3-205ENST00000536107 ATF5Q9Y2D1 282 aaPredicted RBP13.96□□□□□ -0.17
YBX3-205ENST00000536107 PIP4P2Q8N4L2 257 aa13.95□□□□□ -0.18
YBX3-205ENST00000536107 OSCARQ8IYS5 282 aa13.89□□□□□ -0.19
YBX3-205ENST00000536107 FOXD4L1Q9NU39 408 aa13.89□□□□□ -0.19
YBX3-205ENST00000536107 FXR2P51116 673 aaKnown RBP eCLIP13.83□□□□□ -0.2
YBX3-205ENST00000536107 HAX1O00165 279 aa13.82□□□□□ -0.2
YBX3-205ENST00000536107 PITPNM1O00562 1244 aa13.82□□□□□ -0.2
YBX3-205ENST00000536107 SLC4A1APQ9BWU0 796 aaKnown RBP13.79□□□□□ -0.2
YBX3-205ENST00000536107 EVX2Q03828 476 aa13.6□□□□□ -0.23
YBX3-205ENST00000536107 SPDYE2BA6NHP3 402 aa13.57□□□□□ -0.24
YBX3-205ENST00000536107 SPDYE6P0CI01 402 aa13.57□□□□□ -0.24
YBX3-205ENST00000536107 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
YBX3-205ENST00000536107 ATXN8OSP0DMR3 200 aa13.54□□□□□ -0.24
YBX3-205ENST00000536107 ZBTB22O15209 634 aa13.49□□□□□ -0.25
YBX3-205ENST00000536107 FBLN2P98095 1184 aa13.49□□□□□ -0.25
YBX3-205ENST00000536107 PRKAR2AP13861 404 aaKnown RBP13.46□□□□□ -0.25
YBX3-205ENST00000536107 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
YBX3-205ENST00000536107 CLEC11AQ9Y240 323 aa13.4□□□□□ -0.26
YBX3-205ENST00000536107 C19orf67A6NJJ6 358 aa13.39□□□□□ -0.27
YBX3-205ENST00000536107 SSUH2Q9Y2M2 353 aa13.33□□□□□ -0.28
YBX3-205ENST00000536107 MKRN4PQ13434 485 aaPredicted RBP13.31□□□□□ -0.28
YBX3-205ENST00000536107 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
YBX3-205ENST00000536107 GABBR2O75899 941 aa13.29□□□□□ -0.28
YBX3-205ENST00000536107 LHX8Q68G74 356 aa13.23□□□□□ -0.29
YBX3-205ENST00000536107 CHADLQ6NUI6 762 aa13.18□□□□□ -0.3
YBX3-205ENST00000536107 PRR29P0C7W0 189 aa13.13□□□□□ -0.31
YBX3-205ENST00000536107 PABPN1Q86U42 306 aaKnown RBP eCLIP13.08□□□□□ -0.32
YBX3-205ENST00000536107 CD44P16070 742 aaKnown RBP13.01□□□□□ -0.33
YBX3-205ENST00000536107 CLCN6P51797 869 aa13.01□□□□□ -0.33
YBX3-205ENST00000536107 POTEIP0CG38 1075 aa13□□□□□ -0.33
YBX3-205ENST00000536107 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
YBX3-205ENST00000536107 DCBLD2Q96PD2 775 aa12.84□□□□□ -0.35
YBX3-205ENST00000536107 ZNF579Q8NAF0 562 aaKnown RBP12.81□□□□□ -0.36
YBX3-205ENST00000536107 ZRANB1Q9UGI0 708 aa12.75□□□□□ -0.37
YBX3-205ENST00000536107 PLSCR2Q9NRY7 297 aa12.73□□□□□ -0.37
YBX3-205ENST00000536107 CREBZFQ9NS37 354 aa12.7□□□□□ -0.38
YBX3-205ENST00000536107 STAG3Q9UJ98 1225 aa12.67□□□□□ -0.38
YBX3-205ENST00000536107 GALR2O43603 387 aaPredicted RBP12.66□□□□□ -0.38
YBX3-205ENST00000536107 OTUD5Q96G74 571 aa12.62□□□□□ -0.39
YBX3-205ENST00000536107 PAK3O75914 559 aaPredicted RBP12.57□□□□□ -0.4
YBX3-205ENST00000536107 POTEB2H3BUK9 544 aa12.56□□□□□ -0.4
YBX3-205ENST00000536107 PHF12Q96QT6 1004 aa12.51□□□□□ -0.41
YBX3-205ENST00000536107 POTEMA6NI47 508 aa12.47□□□□□ -0.41
YBX3-205ENST00000536107 NPM1P06748 294 aaKnown RBP eCLIP12.47□□□□□ -0.41
YBX3-205ENST00000536107 CSRNP3Q8WYN3 585 aa12.47□□□□□ -0.41
YBX3-205ENST00000536107 SPDYE4A6NLX3 237 aa12.45□□□□□ -0.42
YBX3-205ENST00000536107 PELP1Q8IZL8 1130 aaKnown RBP12.45□□□□□ -0.42
YBX3-205ENST00000536107 MNX1P50219 401 aaPredicted RBP12.44□□□□□ -0.42
YBX3-205ENST00000536107 POTEGQ6S5H5 508 aa12.42□□□□□ -0.42
YBX3-205ENST00000536107 ASTLQ6HA08 431 aaPredicted RBP12.39□□□□□ -0.43
YBX3-205ENST00000536107 METRNQ9UJH8 293 aa12.37□□□□□ -0.43
YBX3-205ENST00000536107 SLC39A7Q92504 469 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms