RNA–Protein interactions for RNA: ENST00000534553.5

BEST1-208, Transcript of bestrophin 1, humanhuman

TSL 2 BASIC

Gene BEST1, Length 1,829 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST1-208ENST00000534553 NISCHQ9Y2I1 1504 aa29.72■■■□□ 2.35
BEST1-208ENST00000534553 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
BEST1-208ENST00000534553 ZCCHC6Q5VYS8 1495 aaKnown RBP25.04■■□□□ 1.6
BEST1-208ENST00000534553 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
BEST1-208ENST00000534553 MYO15BQ96JP2 1530 aa24.33■■□□□ 1.49
BEST1-208ENST00000534553 DCAF8L2P0C7V8 631 aa24.33■■□□□ 1.48
BEST1-208ENST00000534553 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
BEST1-208ENST00000534553 ABCC9O60706 1549 aa24.07■■□□□ 1.44
BEST1-208ENST00000534553 NACADO15069 1562 aa24.02■■□□□ 1.44
BEST1-208ENST00000534553 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
BEST1-208ENST00000534553 SCRIBQ14160 1630 aa23.69■■□□□ 1.38
BEST1-208ENST00000534553 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.36
BEST1-208ENST00000534553 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
BEST1-208ENST00000534553 UNC13AQ9UPW8 1703 aa23.13■■□□□ 1.29
BEST1-208ENST00000534553 BAZ1AQ9NRL2 1556 aaPredicted RBP22.98■■□□□ 1.27
BEST1-208ENST00000534553 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
BEST1-208ENST00000534553 BICRAQ9NZM4 1560 aa22.92■■□□□ 1.26
BEST1-208ENST00000534553 MROH2BQ7Z745 1585 aa22.91■■□□□ 1.26
BEST1-208ENST00000534553 SMARCA4P51532 1647 aa22.78■■□□□ 1.24
BEST1-208ENST00000534553 WIZO95785 1651 aa22.71■■□□□ 1.23
BEST1-208ENST00000534553 PABPN1Q86U42 306 aaKnown RBP eCLIP22.71■■□□□ 1.23
BEST1-208ENST00000534553 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
BEST1-208ENST00000534553 TOP2AP11388 1531 aaKnown RBP22.59■■□□□ 1.21
BEST1-208ENST00000534553 PEG3Q9GZU2 1588 aa22.57■■□□□ 1.2
BEST1-208ENST00000534553 SMARCA2P51531 1590 aa22.41■■□□□ 1.18
BEST1-208ENST00000534553 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
BEST1-208ENST00000534553 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
BEST1-208ENST00000534553 EIF4G1Q04637 1599 aaKnown RBP22.26■■□□□ 1.15
BEST1-208ENST00000534553 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
BEST1-208ENST00000534553 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
BEST1-208ENST00000534553 HMGXB3Q12766 1538 aa22.17■■□□□ 1.14
BEST1-208ENST00000534553 NCAPD3P42695 1498 aa22.15■■□□□ 1.14
BEST1-208ENST00000534553 ABCC8Q09428 1581 aa21.86■■□□□ 1.09
BEST1-208ENST00000534553 CC2D2AQ9P2K1 1620 aa21.83■■□□□ 1.08
BEST1-208ENST00000534553 WRNQ14191 1432 aaPredicted RBP eCLIP21.8■■□□□ 1.08
BEST1-208ENST00000534553 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
BEST1-208ENST00000534553 EEA1Q15075 1411 aa21.73■■□□□ 1.07
BEST1-208ENST00000534553 CFTRP13569 1480 aa21.72■■□□□ 1.07
BEST1-208ENST00000534553 FAM9AQ8IZU1 332 aaPredicted RBP21.65■■□□□ 1.06
BEST1-208ENST00000534553 SYNJ1O43426 1573 aa21.63■■□□□ 1.05
BEST1-208ENST00000534553 PRDM2Q13029 1718 aa21.62■■□□□ 1.05
BEST1-208ENST00000534553 TOP2BQ02880 1626 aa21.6■■□□□ 1.05
BEST1-208ENST00000534553 CADPSQ9ULU8 1353 aa21.59■■□□□ 1.05
BEST1-208ENST00000534553 BIVM-ERCC5R4GMW8 1640 aa21.56■■□□□ 1.04
BEST1-208ENST00000534553 SOGA1O94964 1423 aa21.52■■□□□ 1.04
BEST1-208ENST00000534553 CSRNP3Q8WYN3 585 aa21.47■■□□□ 1.03
BEST1-208ENST00000534553 CUX1P39880 1505 aa21.41■■□□□ 1.02
BEST1-208ENST00000534553 RUSC2Q8N2Y8 1516 aa21.38■■□□□ 1.01
BEST1-208ENST00000534553 LAMC3Q9Y6N6 1575 aa21.37■■□□□ 1.01
BEST1-208ENST00000534553 GOLGA3Q08378 1498 aa21.37■■□□□ 1.01
BEST1-208ENST00000534553 CEP164Q9UPV0 1460 aa21.36■■□□□ 1.01
BEST1-208ENST00000534553 KIF21BO75037 1637 aa21.35■■□□□ 1.01
BEST1-208ENST00000534553 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
BEST1-208ENST00000534553 FANCD2Q9BXW9 1451 aa21.33■■□□□ 1.01
BEST1-208ENST00000534553 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
BEST1-208ENST00000534553 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
BEST1-208ENST00000534553 DNMBPQ6XZF7 1577 aa21.21■□□□□ 0.99
BEST1-208ENST00000534553 CEP162Q5TB80 1403 aa21.21■□□□□ 0.99
BEST1-208ENST00000534553 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
BEST1-208ENST00000534553 ERICH3Q5RHP9 1530 aa21.2■□□□□ 0.98
BEST1-208ENST00000534553 NESP48681 1621 aa21.19■□□□□ 0.98
BEST1-208ENST00000534553 UBTFP17480 764 aaKnown RBP21.18■□□□□ 0.98
BEST1-208ENST00000534553 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
BEST1-208ENST00000534553 PRXQ9BXM0 1461 aa21.15■□□□□ 0.98
BEST1-208ENST00000534553 TRIM26Q12899 539 aaPredicted RBP21.13■□□□□ 0.97
BEST1-208ENST00000534553 DNAJC5BQ9UF47 199 aa21.13■□□□□ 0.97
BEST1-208ENST00000534553 TOPBP1Q92547 1522 aa21.12■□□□□ 0.97
BEST1-208ENST00000534553 RAPGEF2Q9Y4G8 1499 aa21.11■□□□□ 0.97
BEST1-208ENST00000534553 CUX2O14529 1486 aa21.08■□□□□ 0.97
BEST1-208ENST00000534553 PCGF6Q9BYE7 350 aa21.08■□□□□ 0.96
BEST1-208ENST00000534553 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
BEST1-208ENST00000534553 POLA1P09884 1462 aaPredicted RBP21.03■□□□□ 0.96
BEST1-208ENST00000534553 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
BEST1-208ENST00000534553 CLIP1P30622 1438 aa21■□□□□ 0.95
BEST1-208ENST00000534553 IGF1RP08069 1367 aa20.98■□□□□ 0.95
BEST1-208ENST00000534553 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
BEST1-208ENST00000534553 RAD54L2Q9Y4B4 1467 aa20.9■□□□□ 0.94
BEST1-208ENST00000534553 WDR97A6NE52 1622 aa20.9■□□□□ 0.94
BEST1-208ENST00000534553 CARMIL1Q5VZK9 1371 aa20.89■□□□□ 0.94
BEST1-208ENST00000534553 MRC2Q9UBG0 1479 aa20.88■□□□□ 0.93
BEST1-208ENST00000534553 VPS8Q8N3P4 1428 aa20.88■□□□□ 0.93
BEST1-208ENST00000534553 CUL7Q14999 1698 aa20.87■□□□□ 0.93
BEST1-208ENST00000534553 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
BEST1-208ENST00000534553 TARBP1Q13395 1621 aaKnown RBP20.77■□□□□ 0.92
BEST1-208ENST00000534553 WDR62O43379 1518 aa20.76■□□□□ 0.91
BEST1-208ENST00000534553 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
BEST1-208ENST00000534553 HRCP23327 699 aa20.75■□□□□ 0.91
BEST1-208ENST00000534553 ARAP1Q96P48 1450 aa20.72■□□□□ 0.91
BEST1-208ENST00000534553 APLP2Q06481 763 aa20.7■□□□□ 0.9
BEST1-208ENST00000534553 IFT140Q96RY7 1462 aa20.7■□□□□ 0.9
BEST1-208ENST00000534553 TDRD9Q8NDG6 1382 aaKnown RBP20.68■□□□□ 0.9
BEST1-208ENST00000534553 ERCC6Q03468 1493 aa20.68■□□□□ 0.9
BEST1-208ENST00000534553 ARHGAP35Q9NRY4 1499 aa20.68■□□□□ 0.9
BEST1-208ENST00000534553 PPARGC1BQ86YN6 1023 aaKnown RBP20.64■□□□□ 0.89
BEST1-208ENST00000534553 EFCAB5A4FU69 1503 aa20.62■□□□□ 0.89
BEST1-208ENST00000534553 RANGAP1P46060 587 aaPredicted RBP20.62■□□□□ 0.89
BEST1-208ENST00000534553 CTTNBP2Q8WZ74 1663 aa20.61■□□□□ 0.89
BEST1-208ENST00000534553 THOC2Q8NI27 1593 aaKnown RBP20.6■□□□□ 0.89
BEST1-208ENST00000534553 PBRM1Q86U86 1689 aa20.59■□□□□ 0.89
BEST1-208ENST00000534553 GRIN2BQ13224 1484 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms