RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 NISCHQ9Y2I1 1504 aa39.05■■■■□ 3.84
SMPD1-210ENST00000534405 SHROOM4Q9ULL8 1493 aa33.22■■■□□ 2.91
SMPD1-210ENST00000534405 CCDC180Q9P1Z9 1646 aa33.22■■■□□ 2.91
SMPD1-210ENST00000534405 ZCCHC6Q5VYS8 1495 aaKnown RBP33.04■■■□□ 2.88
SMPD1-210ENST00000534405 SUPT5HO00267 1087 aaKnown RBP32.52■■■□□ 2.8
SMPD1-210ENST00000534405 PELP1Q8IZL8 1130 aaKnown RBP32.4■■■□□ 2.78
SMPD1-210ENST00000534405 HRCP23327 699 aa32.32■■■□□ 2.76
SMPD1-210ENST00000534405 DCAF8L2P0C7V8 631 aa32.3■■■□□ 2.76
SMPD1-210ENST00000534405 DCAF1Q9Y4B6 1507 aa32.04■■■□□ 2.72
SMPD1-210ENST00000534405 CHIC1Q5VXU3 224 aa31.64■■■□□ 2.65
SMPD1-210ENST00000534405 MYO15BQ96JP2 1530 aa31.55■■■□□ 2.64
SMPD1-210ENST00000534405 MYT1Q01538 1121 aa31.43■■■□□ 2.62
SMPD1-210ENST00000534405 PPARGC1BQ86YN6 1023 aaKnown RBP31.36■■■□□ 2.61
SMPD1-210ENST00000534405 ABCC9O60706 1549 aa31.15■■■□□ 2.58
SMPD1-210ENST00000534405 SCRIBQ14160 1630 aa31.13■■■□□ 2.57
SMPD1-210ENST00000534405 PCGF6Q9BYE7 350 aa31.09■■■□□ 2.57
SMPD1-210ENST00000534405 RSF1Q96T23 1441 aaPredicted RBP30.89■■■□□ 2.54
SMPD1-210ENST00000534405 SCAF1Q9H7N4 1312 aaKnown RBP30.88■■■□□ 2.53
SMPD1-210ENST00000534405 NACADO15069 1562 aa30.71■■■□□ 2.51
SMPD1-210ENST00000534405 LOC105371045A0A1W2PR82 267 aa30.69■■■□□ 2.5
SMPD1-210ENST00000534405 RB1CC1Q8TDY2 1594 aa30.57■■■□□ 2.48
SMPD1-210ENST00000534405 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
SMPD1-210ENST00000534405 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
SMPD1-210ENST00000534405 TRIM41Q8WV44 630 aa30.28■■■□□ 2.44
SMPD1-210ENST00000534405 WIZO95785 1651 aa30.21■■■□□ 2.43
SMPD1-210ENST00000534405 ZEB1P37275 1124 aaPredicted RBP30.2■■■□□ 2.43
SMPD1-210ENST00000534405 TRIM26Q12899 539 aaPredicted RBP30.1■■■□□ 2.41
SMPD1-210ENST00000534405 FAM9AQ8IZU1 332 aaPredicted RBP30.05■■■□□ 2.4
SMPD1-210ENST00000534405 BAZ1AQ9NRL2 1556 aaPredicted RBP30■■■□□ 2.39
SMPD1-210ENST00000534405 ACIN1Q9UKV3 1341 aaKnown RBP29.98■■■□□ 2.39
SMPD1-210ENST00000534405 UNC13AQ9UPW8 1703 aa29.84■■■□□ 2.37
SMPD1-210ENST00000534405 EIF4G1Q04637 1599 aaKnown RBP29.82■■■□□ 2.36
SMPD1-210ENST00000534405 EHMT2Q96KQ7 1210 aa29.79■■■□□ 2.36
SMPD1-210ENST00000534405 TTBK1Q5TCY1 1321 aaPredicted RBP29.76■■■□□ 2.36
SMPD1-210ENST00000534405 NEUROD1Q13562 356 aa29.76■■■□□ 2.35
SMPD1-210ENST00000534405 SMARCA4P51532 1647 aa29.76■■■□□ 2.35
SMPD1-210ENST00000534405 TOP2AP11388 1531 aaKnown RBP29.71■■■□□ 2.35
SMPD1-210ENST00000534405 GTF3C3Q9Y5Q9 886 aa29.65■■■□□ 2.34
SMPD1-210ENST00000534405 CCDC88BA6NC98 1476 aa29.6■■■□□ 2.33
SMPD1-210ENST00000534405 SMARCA2P51531 1590 aa29.57■■■□□ 2.32
SMPD1-210ENST00000534405 ABCC8Q09428 1581 aa29.51■■■□□ 2.32
SMPD1-210ENST00000534405 CENPBP07199 599 aaPredicted RBP29.48■■■□□ 2.31
SMPD1-210ENST00000534405 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
SMPD1-210ENST00000534405 PABPN1Q86U42 306 aaKnown RBP eCLIP29.46■■■□□ 2.31
SMPD1-210ENST00000534405 SOGA1O94964 1423 aa29.22■■■□□ 2.27
SMPD1-210ENST00000534405 PEG3Q9GZU2 1588 aa29.2■■■□□ 2.26
SMPD1-210ENST00000534405 RUSC2Q8N2Y8 1516 aa29.1■■■□□ 2.25
SMPD1-210ENST00000534405 BCL11AQ9H165 835 aa29.05■■■□□ 2.24
SMPD1-210ENST00000534405 CEP162Q5TB80 1403 aa29.03■■■□□ 2.24
SMPD1-210ENST00000534405 ATAD2BQ9ULI0 1458 aa29.01■■■□□ 2.23
SMPD1-210ENST00000534405 DIEXFQ68CQ4 756 aaKnown RBP29■■■□□ 2.23
SMPD1-210ENST00000534405 EEA1Q15075 1411 aa29■■■□□ 2.23
SMPD1-210ENST00000534405 CSRNP3Q8WYN3 585 aa29■■■□□ 2.23
SMPD1-210ENST00000534405 WRNQ14191 1432 aaPredicted RBP eCLIP28.99■■■□□ 2.23
SMPD1-210ENST00000534405 TNIKQ9UKE5 1360 aa28.98■■■□□ 2.23
SMPD1-210ENST00000534405 BAZ1BQ9UIG0 1483 aaKnown RBP28.9■■■□□ 2.22
SMPD1-210ENST00000534405 SYNJ1O43426 1573 aa28.89■■■□□ 2.22
SMPD1-210ENST00000534405 UBTFP17480 764 aaKnown RBP28.84■■■□□ 2.21
SMPD1-210ENST00000534405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.82■■■□□ 2.2
SMPD1-210ENST00000534405 GOLGA3Q08378 1498 aa28.82■■■□□ 2.2
SMPD1-210ENST00000534405 CCER1Q8TC90 406 aaPredicted RBP28.69■■■□□ 2.18
SMPD1-210ENST00000534405 ANP32EQ9BTT0 268 aa28.68■■■□□ 2.18
SMPD1-210ENST00000534405 CEP164Q9UPV0 1460 aa28.66■■■□□ 2.18
SMPD1-210ENST00000534405 KIF21BO75037 1637 aa28.65■■■□□ 2.18
SMPD1-210ENST00000534405 TOP2BQ02880 1626 aa28.52■■■□□ 2.16
SMPD1-210ENST00000534405 RAPGEF2Q9Y4G8 1499 aa28.51■■■□□ 2.15
SMPD1-210ENST00000534405 CLIP1P30622 1438 aa28.49■■■□□ 2.15
SMPD1-210ENST00000534405 NCAPD3P42695 1498 aa28.44■■■□□ 2.14
SMPD1-210ENST00000534405 HMGXB3Q12766 1538 aa28.43■■■□□ 2.14
SMPD1-210ENST00000534405 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
SMPD1-210ENST00000534405 PRKCSHP14314 528 aaPredicted RBP28.41■■■□□ 2.14
SMPD1-210ENST00000534405 YTHDC1Q96MU7 727 aaKnown RBP28.4■■■□□ 2.14
SMPD1-210ENST00000534405 VPS8Q8N3P4 1428 aa28.37■■■□□ 2.13
SMPD1-210ENST00000534405 ZNF316A6NFI3 1004 aaPredicted RBP28.33■■■□□ 2.13
SMPD1-210ENST00000534405 CLSPNQ9HAW4 1339 aa28.31■■■□□ 2.12
SMPD1-210ENST00000534405 RANGAP1P46060 587 aaPredicted RBP28.3■■■□□ 2.12
SMPD1-210ENST00000534405 CUX1P39880 1505 aa28.28■■■□□ 2.12
SMPD1-210ENST00000534405 PRXQ9BXM0 1461 aa28.24■■■□□ 2.11
SMPD1-210ENST00000534405 TSHZ2Q9NRE2 1034 aa28.22■■■□□ 2.11
SMPD1-210ENST00000534405 CFTRP13569 1480 aa28.21■■■□□ 2.11
SMPD1-210ENST00000534405 ERICH3Q5RHP9 1530 aa28.19■■■□□ 2.1
SMPD1-210ENST00000534405 HNRNPUL2Q1KMD3 747 aaKnown RBP28.19■■■□□ 2.1
SMPD1-210ENST00000534405 MIER1Q8N108 512 aa28.16■■■□□ 2.1
SMPD1-210ENST00000534405 APLP2Q06481 763 aa28.13■■■□□ 2.09
SMPD1-210ENST00000534405 SUPT16HQ9Y5B9 1047 aaKnown RBP28.13■■■□□ 2.09
SMPD1-210ENST00000534405 ARAP1Q96P48 1450 aa28.09■■■□□ 2.09
SMPD1-210ENST00000534405 KIF27Q86VH2 1401 aa28.08■■■□□ 2.08
SMPD1-210ENST00000534405 PRDM2Q13029 1718 aa27.97■■■□□ 2.07
SMPD1-210ENST00000534405 ERICH6Q7L0X2 663 aa27.93■■■□□ 2.06
SMPD1-210ENST00000534405 KANK4Q5T7N3 995 aaPredicted RBP27.92■■■□□ 2.06
SMPD1-210ENST00000534405 CADPSQ9ULU8 1353 aa27.88■■■□□ 2.05
SMPD1-210ENST00000534405 ARHGAP35Q9NRY4 1499 aa27.85■■■□□ 2.05
SMPD1-210ENST00000534405 CUX2O14529 1486 aa27.84■■■□□ 2.05
SMPD1-210ENST00000534405 IGF1RP08069 1367 aa27.81■■■□□ 2.04
SMPD1-210ENST00000534405 FGD5Q6ZNL6 1462 aa27.76■■■□□ 2.04
SMPD1-210ENST00000534405 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
SMPD1-210ENST00000534405 RRBP1Q9P2E9 1410 aaKnown RBP27.71■■■□□ 2.03
SMPD1-210ENST00000534405 DHX57Q6P158 1386 aaKnown RBP27.68■■■□□ 2.02
SMPD1-210ENST00000534405 CARMIL1Q5VZK9 1371 aa27.67■■■□□ 2.02
SMPD1-210ENST00000534405 FANCD2Q9BXW9 1451 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 529.3 ms