RNA–Protein interactions for RNA: ENST00000529898.1

CTR9-205, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-205ENST00000529898 AEBP2Q6ZN18 517 aaPredicted RBP21.4■■□□□ 1.02
CTR9-205ENST00000529898 CHIC1Q5VXU3 224 aa20.62■□□□□ 0.89
CTR9-205ENST00000529898 SENP3Q9H4L4 574 aaPredicted RBP18.2■□□□□ 0.5
CTR9-205ENST00000529898 PHF23Q9BUL5 403 aaPredicted RBP18.1■□□□□ 0.49
CTR9-205ENST00000529898 FOXD1Q16676 465 aa16.92■□□□□ 0.3
CTR9-205ENST00000529898 PLPPR3Q6T4P5 718 aa16.58■□□□□ 0.24
CTR9-205ENST00000529898 PPP6R1Q9UPN7 881 aa16.05■□□□□ 0.16
CTR9-205ENST00000529898 ADRA2BP18089 450 aa15.97■□□□□ 0.15
CTR9-205ENST00000529898 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
CTR9-205ENST00000529898 MSH5O43196 834 aa15.73■□□□□ 0.11
CTR9-205ENST00000529898 POTEDQ86YR6 584 aa14.84□□□□□ -0.03
CTR9-205ENST00000529898 SCAF1Q9H7N4 1312 aaKnown RBP14.65□□□□□ -0.06
CTR9-205ENST00000529898 MAPK8IP2Q13387 824 aaPredicted RBP14.58□□□□□ -0.08
CTR9-205ENST00000529898 PPP4R3CPQ6ZMV5 832 aa14.56□□□□□ -0.08
CTR9-205ENST00000529898 DMRT2Q9Y5R5 561 aa14.5□□□□□ -0.09
CTR9-205ENST00000529898 CNKSR2Q8WXI2 1034 aa14.24□□□□□ -0.13
CTR9-205ENST00000529898 HOXD11P31277 338 aaPredicted RBP14.11□□□□□ -0.15
CTR9-205ENST00000529898 NCBP3Q53F19 620 aaKnown RBP14.08□□□□□ -0.16
CTR9-205ENST00000529898 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
CTR9-205ENST00000529898 NPM3O75607 178 aaKnown RBP13.89□□□□□ -0.19
CTR9-205ENST00000529898 KCNA4P22459 653 aa13.85□□□□□ -0.19
CTR9-205ENST00000529898 DCAF8L1A6NGE4 600 aa13.71□□□□□ -0.21
CTR9-205ENST00000529898 DNAJC5BQ9UF47 199 aa13.71□□□□□ -0.21
CTR9-205ENST00000529898 RNF39Q9H2S5 420 aa13.47□□□□□ -0.25
CTR9-205ENST00000529898 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.33□□□□□ -0.28
CTR9-205ENST00000529898 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
CTR9-205ENST00000529898 CACNB1Q02641 598 aaPredicted RBP13.25□□□□□ -0.29
CTR9-205ENST00000529898 SLC4A2P04920 1241 aa13.22□□□□□ -0.29
CTR9-205ENST00000529898 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
CTR9-205ENST00000529898 SLC4A1APQ9BWU0 796 aaKnown RBP13.12□□□□□ -0.31
CTR9-205ENST00000529898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.87□□□□□ -0.35
CTR9-205ENST00000529898 HNRNPUL2Q1KMD3 747 aaKnown RBP12.87□□□□□ -0.35
CTR9-205ENST00000529898 FOXD4L1Q9NU39 408 aa12.86□□□□□ -0.35
CTR9-205ENST00000529898 MYCNP04198 464 aaPredicted RBP12.84□□□□□ -0.35
CTR9-205ENST00000529898 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
CTR9-205ENST00000529898 SAMD1Q6SPF0 538 aaPredicted RBP12.81□□□□□ -0.36
CTR9-205ENST00000529898 APLP2Q06481 763 aa12.8□□□□□ -0.36
CTR9-205ENST00000529898 ZBTB22O15209 634 aa12.77□□□□□ -0.37
CTR9-205ENST00000529898 CAPN15O75808 1086 aa12.74□□□□□ -0.37
CTR9-205ENST00000529898 DSG3P32926 999 aa12.7□□□□□ -0.38
CTR9-205ENST00000529898 ZNF219Q9P2Y4 722 aaPredicted RBP12.67□□□□□ -0.38
CTR9-205ENST00000529898 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
CTR9-205ENST00000529898 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
CTR9-205ENST00000529898 ATF5Q9Y2D1 282 aaPredicted RBP12.5□□□□□ -0.41
CTR9-205ENST00000529898 ABCB7O75027 752 aa12.46□□□□□ -0.41
CTR9-205ENST00000529898 CSRNP3Q8WYN3 585 aa12.45□□□□□ -0.42
CTR9-205ENST00000529898 POLA2Q14181 598 aa12.38□□□□□ -0.43
CTR9-205ENST00000529898 EHMT2Q96KQ7 1210 aa12.3□□□□□ -0.44
CTR9-205ENST00000529898 ZBTB12Q9Y330 459 aaPredicted RBP12.19□□□□□ -0.46
CTR9-205ENST00000529898 RBM42Q9BTD8 480 aaKnown RBP12.09□□□□□ -0.47
CTR9-205ENST00000529898 FBLN2P98095 1184 aa11.97□□□□□ -0.49
CTR9-205ENST00000529898 MKRN4PQ13434 485 aaPredicted RBP11.97□□□□□ -0.49
CTR9-205ENST00000529898 OSCARQ8IYS5 282 aa11.95□□□□□ -0.5
CTR9-205ENST00000529898 AKT1S1Q96B36 256 aa11.9□□□□□ -0.5
CTR9-205ENST00000529898 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
CTR9-205ENST00000529898 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
CTR9-205ENST00000529898 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
CTR9-205ENST00000529898 REM2Q8IYK8 340 aaPredicted RBP11.76□□□□□ -0.53
CTR9-205ENST00000529898 SSUH2Q9Y2M2 353 aa11.75□□□□□ -0.53
CTR9-205ENST00000529898 CHRDL2Q6WN34 429 aa11.7□□□□□ -0.54
CTR9-205ENST00000529898 ZNF692Q9BU19 519 aaPredicted RBP11.7□□□□□ -0.54
CTR9-205ENST00000529898 POTEHQ6S545 545 aa11.68□□□□□ -0.54
CTR9-205ENST00000529898 PITPNM1O00562 1244 aa11.61□□□□□ -0.55
CTR9-205ENST00000529898 PABPN1Q86U42 306 aaKnown RBP eCLIP11.54□□□□□ -0.56
CTR9-205ENST00000529898 SPDYE1Q8NFV5 336 aaPredicted RBP11.54□□□□□ -0.56
CTR9-205ENST00000529898 FXR2P51116 673 aaKnown RBP eCLIP11.52□□□□□ -0.576e-7■■■□□ 14.8
CTR9-205ENST00000529898 SPDYE4A6NLX3 237 aa11.51□□□□□ -0.57
CTR9-205ENST00000529898 PIP4P2Q8N4L2 257 aa11.49□□□□□ -0.57
CTR9-205ENST00000529898 CLEC11AQ9Y240 323 aa11.42□□□□□ -0.58
CTR9-205ENST00000529898 PROM2Q8N271 834 aa11.4□□□□□ -0.58
CTR9-205ENST00000529898 PRR29P0C7W0 189 aa11.33□□□□□ -0.6
CTR9-205ENST00000529898 STAG3Q9UJ98 1225 aa11.33□□□□□ -0.6
CTR9-205ENST00000529898 PRKAR2AP13861 404 aaKnown RBP11.29□□□□□ -0.6
CTR9-205ENST00000529898 CHADLQ6NUI6 762 aa11.2□□□□□ -0.62
CTR9-205ENST00000529898 FKBP8Q14318 412 aa11.19□□□□□ -0.62
CTR9-205ENST00000529898 CREBZFQ9NS37 354 aa11.16□□□□□ -0.62
CTR9-205ENST00000529898 HAX1O00165 279 aa11.14□□□□□ -0.63
CTR9-205ENST00000529898 C19orf67A6NJJ6 358 aa11.13□□□□□ -0.63
CTR9-205ENST00000529898 FARP1Q9Y4F1 1045 aaPredicted RBP11.13□□□□□ -0.63
CTR9-205ENST00000529898 EVX2Q03828 476 aa11.09□□□□□ -0.63
CTR9-205ENST00000529898 SP7Q8TDD2 431 aaPredicted RBP11.09□□□□□ -0.63
CTR9-205ENST00000529898 MNX1P50219 401 aaPredicted RBP11.05□□□□□ -0.64
CTR9-205ENST00000529898 CD44P16070 742 aaKnown RBP10.95□□□□□ -0.66
CTR9-205ENST00000529898 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
CTR9-205ENST00000529898 FBXO3Q9UK99 471 aa10.94□□□□□ -0.66
CTR9-205ENST00000529898 MIER1Q8N108 512 aa10.92□□□□□ -0.66
CTR9-205ENST00000529898 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
CTR9-205ENST00000529898 CLCN6P51797 869 aa10.88□□□□□ -0.67
CTR9-205ENST00000529898 ZNF579Q8NAF0 562 aaKnown RBP10.86□□□□□ -0.67
CTR9-205ENST00000529898 GABBR2O75899 941 aa10.85□□□□□ -0.67
CTR9-205ENST00000529898 PLCD3Q8N3E9 789 aa10.84□□□□□ -0.67
CTR9-205ENST00000529898 ZRANB1Q9UGI0 708 aa10.83□□□□□ -0.68
CTR9-205ENST00000529898 ZBTB47Q9UFB7 747 aaPredicted RBP10.81□□□□□ -0.68
CTR9-205ENST00000529898 PAK3O75914 559 aaPredicted RBP10.79□□□□□ -0.68
CTR9-205ENST00000529898 VASPP50552 380 aaPredicted RBP10.78□□□□□ -0.68
CTR9-205ENST00000529898 NUBP1P53384 320 aa10.75□□□□□ -0.69
CTR9-205ENST00000529898 RASEFQ8IZ41 740 aa10.74□□□□□ -0.69
CTR9-205ENST00000529898 CCDC61Q9Y6R9 512 aa10.72□□□□□ -0.69
CTR9-205ENST00000529898 PHF12Q96QT6 1004 aa10.7□□□□□ -0.7
CTR9-205ENST00000529898 TSPYL2Q9H2G4 693 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms