RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 NISCHQ9Y2I1 1504 aa37.54■■■■□ 3.6
USH1C-205ENST00000527020 CCDC180Q9P1Z9 1646 aa32.18■■■□□ 2.74
USH1C-205ENST00000527020 ZCCHC6Q5VYS8 1495 aaKnown RBP31.73■■■□□ 2.67
USH1C-205ENST00000527020 SHROOM4Q9ULL8 1493 aa31.53■■■□□ 2.64
USH1C-205ENST00000527020 DCAF1Q9Y4B6 1507 aa30.91■■■□□ 2.54
USH1C-205ENST00000527020 DCAF8L2P0C7V8 631 aa30.83■■■□□ 2.53
USH1C-205ENST00000527020 SUPT5HO00267 1087 aaKnown RBP30.76■■■□□ 2.51
USH1C-205ENST00000527020 MYO15BQ96JP2 1530 aa30.13■■■□□ 2.41
USH1C-205ENST00000527020 SCRIBQ14160 1630 aa29.94■■■□□ 2.38
USH1C-205ENST00000527020 CHIC1Q5VXU3 224 aa29.91■■■□□ 2.38
USH1C-205ENST00000527020 ABCC9O60706 1549 aa29.91■■■□□ 2.38
USH1C-205ENST00000527020 NACADO15069 1562 aa29.74■■■□□ 2.35
USH1C-205ENST00000527020 RSF1Q96T23 1441 aaPredicted RBP29.55■■■□□ 2.32
USH1C-205ENST00000527020 RB1CC1Q8TDY2 1594 aa29.27■■■□□ 2.28
USH1C-205ENST00000527020 CECR2Q9BXF3 1484 aa29.23■■■□□ 2.27
USH1C-205ENST00000527020 MROH2BQ7Z745 1585 aa29.14■■■□□ 2.25
USH1C-205ENST00000527020 WIZO95785 1651 aa28.99■■■□□ 2.23
USH1C-205ENST00000527020 UNC13AQ9UPW8 1703 aa28.96■■■□□ 2.23
USH1C-205ENST00000527020 LOC105371045A0A1W2PR82 267 aa28.92■■■□□ 2.22
USH1C-205ENST00000527020 BAZ1AQ9NRL2 1556 aaPredicted RBP28.85■■■□□ 2.21
USH1C-205ENST00000527020 TRIM41Q8WV44 630 aa28.73■■■□□ 2.19
USH1C-205ENST00000527020 SMARCA4P51532 1647 aa28.68■■■□□ 2.18
USH1C-205ENST00000527020 EIF4G1Q04637 1599 aaKnown RBP28.6■■■□□ 2.17
USH1C-205ENST00000527020 PCGF6Q9BYE7 350 aa28.57■■■□□ 2.16
USH1C-205ENST00000527020 TOP2AP11388 1531 aaKnown RBP28.56■■■□□ 2.16
USH1C-205ENST00000527020 BICRAQ9NZM4 1560 aa28.54■■■□□ 2.16
USH1C-205ENST00000527020 HRCP23327 699 aa28.48■■■□□ 2.15
USH1C-205ENST00000527020 SMARCA2P51531 1590 aa28.4■■■□□ 2.14
USH1C-205ENST00000527020 FAM9AQ8IZU1 332 aaPredicted RBP28.4■■■□□ 2.14
USH1C-205ENST00000527020 CCDC88BA6NC98 1476 aa28.37■■■□□ 2.13
USH1C-205ENST00000527020 PABPN1Q86U42 306 aaKnown RBP eCLIP28.33■■■□□ 2.13
USH1C-205ENST00000527020 PEG3Q9GZU2 1588 aa28.21■■■□□ 2.11
USH1C-205ENST00000527020 TRIM26Q12899 539 aaPredicted RBP28.19■■■□□ 2.1
USH1C-205ENST00000527020 ABCC8Q09428 1581 aa28.18■■■□□ 2.1
USH1C-205ENST00000527020 EHMT2Q96KQ7 1210 aa28.07■■■□□ 2.08
USH1C-205ENST00000527020 ATAD2BQ9ULI0 1458 aa27.95■■■□□ 2.06
USH1C-205ENST00000527020 PPARGC1BQ86YN6 1023 aaKnown RBP27.86■■■□□ 2.05
USH1C-205ENST00000527020 BAZ1BQ9UIG0 1483 aaKnown RBP27.83■■■□□ 2.05
USH1C-205ENST00000527020 SOGA1O94964 1423 aa27.82■■■□□ 2.04
USH1C-205ENST00000527020 WRNQ14191 1432 aaPredicted RBP eCLIP27.74■■■□□ 2.03
USH1C-205ENST00000527020 RUSC2Q8N2Y8 1516 aa27.72■■■□□ 2.03
USH1C-205ENST00000527020 EEA1Q15075 1411 aa27.72■■■□□ 2.03
USH1C-205ENST00000527020 SYNJ1O43426 1573 aa27.68■■■□□ 2.02
USH1C-205ENST00000527020 CSRNP3Q8WYN3 585 aa27.6■■■□□ 2.01
USH1C-205ENST00000527020 TNIKQ9UKE5 1360 aa27.59■■■□□ 2.01
USH1C-205ENST00000527020 CEP162Q5TB80 1403 aa27.58■■■□□ 2.01
USH1C-205ENST00000527020 HMGXB3Q12766 1538 aa27.5■■□□□ 1.99
USH1C-205ENST00000527020 NCAPD3P42695 1498 aa27.48■■□□□ 1.99
USH1C-205ENST00000527020 GOLGA3Q08378 1498 aa27.48■■□□□ 1.99
USH1C-205ENST00000527020 ZEB1P37275 1124 aaPredicted RBP27.44■■□□□ 1.98
USH1C-205ENST00000527020 KIF21BO75037 1637 aa27.42■■□□□ 1.98
USH1C-205ENST00000527020 TOP2BQ02880 1626 aa27.4■■□□□ 1.98
USH1C-205ENST00000527020 UBTFP17480 764 aaKnown RBP27.37■■□□□ 1.97
USH1C-205ENST00000527020 CEP164Q9UPV0 1460 aa27.36■■□□□ 1.97
USH1C-205ENST00000527020 BIVM-ERCC5R4GMW8 1640 aa27.36■■□□□ 1.97
USH1C-205ENST00000527020 RAPGEF2Q9Y4G8 1499 aa27.19■■□□□ 1.94
USH1C-205ENST00000527020 CFTRP13569 1480 aa27.18■■□□□ 1.94
USH1C-205ENST00000527020 CUX1P39880 1505 aa27.16■■□□□ 1.94
USH1C-205ENST00000527020 TTBK1Q5TCY1 1321 aaPredicted RBP27.12■■□□□ 1.93
USH1C-205ENST00000527020 CLIP1P30622 1438 aa27.11■■□□□ 1.93
USH1C-205ENST00000527020 PRDM2Q13029 1718 aa27.11■■□□□ 1.93
USH1C-205ENST00000527020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.05■■□□□ 1.92
USH1C-205ENST00000527020 ERICH3Q5RHP9 1530 aa27.02■■□□□ 1.92
USH1C-205ENST00000527020 PRXQ9BXM0 1461 aa27.02■■□□□ 1.92
USH1C-205ENST00000527020 VPS8Q8N3P4 1428 aa27■■□□□ 1.91
USH1C-205ENST00000527020 CCER1Q8TC90 406 aaPredicted RBP26.94■■□□□ 1.9
USH1C-205ENST00000527020 CC2D2AQ9P2K1 1620 aa26.93■■□□□ 1.9
USH1C-205ENST00000527020 KIF27Q86VH2 1401 aa26.9■■□□□ 1.9
USH1C-205ENST00000527020 CADPSQ9ULU8 1353 aa26.87■■□□□ 1.89
USH1C-205ENST00000527020 RANGAP1P46060 587 aaPredicted RBP26.8■■□□□ 1.88
USH1C-205ENST00000527020 ARAP1Q96P48 1450 aa26.79■■□□□ 1.88
USH1C-205ENST00000527020 CUX2O14529 1486 aa26.68■■□□□ 1.86
USH1C-205ENST00000527020 FGD5Q6ZNL6 1462 aa26.68■■□□□ 1.86
USH1C-205ENST00000527020 APLP2Q06481 763 aa26.68■■□□□ 1.86
USH1C-205ENST00000527020 IGF1RP08069 1367 aa26.64■■□□□ 1.86
USH1C-205ENST00000527020 FANCD2Q9BXW9 1451 aa26.62■■□□□ 1.85
USH1C-205ENST00000527020 ARHGAP35Q9NRY4 1499 aa26.59■■□□□ 1.85
USH1C-205ENST00000527020 HNRNPUL2Q1KMD3 747 aaKnown RBP26.58■■□□□ 1.85
USH1C-205ENST00000527020 DNMBPQ6XZF7 1577 aa26.52■■□□□ 1.84
USH1C-205ENST00000527020 NESP48681 1621 aa26.5■■□□□ 1.83
USH1C-205ENST00000527020 CARMIL1Q5VZK9 1371 aa26.49■■□□□ 1.83
USH1C-205ENST00000527020 KANK4Q5T7N3 995 aaPredicted RBP26.48■■□□□ 1.83
USH1C-205ENST00000527020 TOPBP1Q92547 1522 aa26.45■■□□□ 1.82
USH1C-205ENST00000527020 ABCA10Q8WWZ4 1543 aa26.41■■□□□ 1.82
USH1C-205ENST00000527020 POLA1P09884 1462 aaPredicted RBP26.41■■□□□ 1.82
USH1C-205ENST00000527020 RAD54L2Q9Y4B4 1467 aa26.41■■□□□ 1.82
USH1C-205ENST00000527020 LAMC3Q9Y6N6 1575 aa26.38■■□□□ 1.81
USH1C-205ENST00000527020 RRBP1Q9P2E9 1410 aaKnown RBP26.36■■□□□ 1.81
USH1C-205ENST00000527020 WDR97A6NE52 1622 aa26.3■■□□□ 1.8
USH1C-205ENST00000527020 URB2Q14146 1524 aaKnown RBP26.29■■□□□ 1.8
USH1C-205ENST00000527020 MAP3K1Q13233 1512 aa26.28■■□□□ 1.8
USH1C-205ENST00000527020 TIAM1Q13009 1591 aa26.28■■□□□ 1.8
USH1C-205ENST00000527020 DIEXFQ68CQ4 756 aaKnown RBP26.28■■□□□ 1.8
USH1C-205ENST00000527020 CUL7Q14999 1698 aa26.26■■□□□ 1.8
USH1C-205ENST00000527020 ZNF316A6NFI3 1004 aaPredicted RBP26.21■■□□□ 1.79
USH1C-205ENST00000527020 CTTNBP2Q8WZ74 1663 aa26.2■■□□□ 1.78
USH1C-205ENST00000527020 CCNB3Q8WWL7 1395 aa26.19■■□□□ 1.78
USH1C-205ENST00000527020 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
USH1C-205ENST00000527020 DHX57Q6P158 1386 aaKnown RBP26.18■■□□□ 1.78
USH1C-205ENST00000527020 PCF11O94913 1555 aaKnown RBP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms