RNA–Protein interactions for RNA: ENST00000525670.5

SVIP-202, Transcript of small VCP interacting protein, humanhuman

TSL 2

Gene SVIP, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-202ENST00000525670 AEBP2Q6ZN18 517 aaPredicted RBP26.26■■□□□ 1.79
SVIP-202ENST00000525670 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
SVIP-202ENST00000525670 SENP3Q9H4L4 574 aaPredicted RBP22.4■■□□□ 1.18
SVIP-202ENST00000525670 PHF23Q9BUL5 403 aaPredicted RBP22.14■■□□□ 1.13
SVIP-202ENST00000525670 FOXD1Q16676 465 aa20.82■□□□□ 0.92
SVIP-202ENST00000525670 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
SVIP-202ENST00000525670 PPP6R1Q9UPN7 881 aa19.67■□□□□ 0.74
SVIP-202ENST00000525670 ADRA2BP18089 450 aa19.63■□□□□ 0.73
SVIP-202ENST00000525670 PIAS4Q8N2W9 510 aaPredicted RBP19.51■□□□□ 0.71
SVIP-202ENST00000525670 MSH5O43196 834 aa19.4■□□□□ 0.7
SVIP-202ENST00000525670 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
SVIP-202ENST00000525670 SCAF1Q9H7N4 1312 aaKnown RBP18.01■□□□□ 0.47
SVIP-202ENST00000525670 MAPK8IP2Q13387 824 aaPredicted RBP17.94■□□□□ 0.46
SVIP-202ENST00000525670 PPP4R3CPQ6ZMV5 832 aa17.81■□□□□ 0.44
SVIP-202ENST00000525670 DMRT2Q9Y5R5 561 aa17.8■□□□□ 0.44
SVIP-202ENST00000525670 CNKSR2Q8WXI2 1034 aa17.43■□□□□ 0.38
SVIP-202ENST00000525670 HOXD11P31277 338 aaPredicted RBP17.25■□□□□ 0.35
SVIP-202ENST00000525670 NCBP3Q53F19 620 aaKnown RBP17.24■□□□□ 0.35
SVIP-202ENST00000525670 RNF216Q9NWF9 866 aaPredicted RBP17.2■□□□□ 0.34
SVIP-202ENST00000525670 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
SVIP-202ENST00000525670 NPM3O75607 178 aaKnown RBP16.95■□□□□ 0.3
SVIP-202ENST00000525670 KCNA4P22459 653 aa16.86■□□□□ 0.29
SVIP-202ENST00000525670 DNAJC5BQ9UF47 199 aa16.65■□□□□ 0.26
SVIP-202ENST00000525670 RNF39Q9H2S5 420 aa16.57■□□□□ 0.24
SVIP-202ENST00000525670 CACNB1Q02641 598 aaPredicted RBP16.47■□□□□ 0.23
SVIP-202ENST00000525670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.22
SVIP-202ENST00000525670 C1QBPQ07021 282 aaKnown RBP16.37■□□□□ 0.21
SVIP-202ENST00000525670 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
SVIP-202ENST00000525670 U3KPZ7 1027 aaPredicted RBP16.11■□□□□ 0.17
SVIP-202ENST00000525670 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
SVIP-202ENST00000525670 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.79■□□□□ 0.12
SVIP-202ENST00000525670 HNRNPUL2Q1KMD3 747 aaKnown RBP15.79■□□□□ 0.12
SVIP-202ENST00000525670 SPINK5Q9NQ38 1064 aaPredicted RBP15.78■□□□□ 0.12
SVIP-202ENST00000525670 CAPN15O75808 1086 aa15.76■□□□□ 0.11
SVIP-202ENST00000525670 APLP2Q06481 763 aa15.73■□□□□ 0.11
SVIP-202ENST00000525670 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
SVIP-202ENST00000525670 MYCNP04198 464 aaPredicted RBP15.68■□□□□ 0.1
SVIP-202ENST00000525670 FOXD4L1Q9NU39 408 aa15.66■□□□□ 0.1
SVIP-202ENST00000525670 DSG3P32926 999 aa15.61■□□□□ 0.09
SVIP-202ENST00000525670 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
SVIP-202ENST00000525670 ZNF219Q9P2Y4 722 aaPredicted RBP15.57■□□□□ 0.08
SVIP-202ENST00000525670 ZBTB22O15209 634 aa15.48■□□□□ 0.07
SVIP-202ENST00000525670 ABCB7O75027 752 aa15.39■□□□□ 0.05
SVIP-202ENST00000525670 ATF5Q9Y2D1 282 aaPredicted RBP15.27■□□□□ 0.04
SVIP-202ENST00000525670 POLA2Q14181 598 aa15.23■□□□□ 0.03
SVIP-202ENST00000525670 ATXN8OSP0DMR3 200 aa15.19■□□□□ 0.02
SVIP-202ENST00000525670 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
SVIP-202ENST00000525670 EHMT2Q96KQ7 1210 aa14.96□□□□□ -0.01
SVIP-202ENST00000525670 ZBTB12Q9Y330 459 aaPredicted RBP14.96□□□□□ -0.01
SVIP-202ENST00000525670 RBM42Q9BTD8 480 aaKnown RBP14.9□□□□□ -0.02
SVIP-202ENST00000525670 FBLN2P98095 1184 aa14.7□□□□□ -0.06
SVIP-202ENST00000525670 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
SVIP-202ENST00000525670 AKT1S1Q96B36 256 aa14.62□□□□□ -0.07
SVIP-202ENST00000525670 MKRN4PQ13434 485 aaPredicted RBP14.59□□□□□ -0.07
SVIP-202ENST00000525670 POTEHQ6S545 545 aa14.52□□□□□ -0.09
SVIP-202ENST00000525670 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
SVIP-202ENST00000525670 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
SVIP-202ENST00000525670 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
SVIP-202ENST00000525670 REM2Q8IYK8 340 aaPredicted RBP14.47□□□□□ -0.09
SVIP-202ENST00000525670 CHRDL2Q6WN34 429 aa14.45□□□□□ -0.1
SVIP-202ENST00000525670 ZNF692Q9BU19 519 aaPredicted RBP14.38□□□□□ -0.11
SVIP-202ENST00000525670 SSUH2Q9Y2M2 353 aa14.33□□□□□ -0.12
SVIP-202ENST00000525670 PITPNM1O00562 1244 aa14.29□□□□□ -0.12
SVIP-202ENST00000525670 SPDYE1Q8NFV5 336 aaPredicted RBP14.19□□□□□ -0.14
SVIP-202ENST00000525670 PABPN1Q86U42 306 aaKnown RBP eCLIP14.16□□□□□ -0.14
SVIP-202ENST00000525670 PIP4P2Q8N4L2 257 aa14.16□□□□□ -0.14
SVIP-202ENST00000525670 FXR2P51116 673 aaKnown RBP eCLIP14.14□□□□□ -0.15
SVIP-202ENST00000525670 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
SVIP-202ENST00000525670 SPDYE4A6NLX3 237 aa14.06□□□□□ -0.16
SVIP-202ENST00000525670 PRR29P0C7W0 189 aa13.96□□□□□ -0.17
SVIP-202ENST00000525670 PRKAR2AP13861 404 aaKnown RBP13.94□□□□□ -0.18
SVIP-202ENST00000525670 STAG3Q9UJ98 1225 aa13.86□□□□□ -0.19
SVIP-202ENST00000525670 HAX1O00165 279 aa13.85□□□□□ -0.19
SVIP-202ENST00000525670 CHADLQ6NUI6 762 aa13.81□□□□□ -0.2
SVIP-202ENST00000525670 PROM2Q8N271 834 aa13.76□□□□□ -0.21
SVIP-202ENST00000525670 SP7Q8TDD2 431 aaPredicted RBP13.75□□□□□ -0.21
SVIP-202ENST00000525670 C19orf67A6NJJ6 358 aa13.67□□□□□ -0.22
SVIP-202ENST00000525670 EVX2Q03828 476 aa13.67□□□□□ -0.22
SVIP-202ENST00000525670 FARP1Q9Y4F1 1045 aaPredicted RBP13.67□□□□□ -0.22
SVIP-202ENST00000525670 CREBZFQ9NS37 354 aa13.66□□□□□ -0.22
SVIP-202ENST00000525670 FKBP8Q14318 412 aa13.62□□□□□ -0.23
SVIP-202ENST00000525670 CD44P16070 742 aaKnown RBP13.51□□□□□ -0.25
SVIP-202ENST00000525670 MNX1P50219 401 aaPredicted RBP13.46□□□□□ -0.25
SVIP-202ENST00000525670 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
SVIP-202ENST00000525670 GABBR2O75899 941 aa13.4□□□□□ -0.26
SVIP-202ENST00000525670 MIER1Q8N108 512 aa13.4□□□□□ -0.26
SVIP-202ENST00000525670 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
SVIP-202ENST00000525670 ZRANB1Q9UGI0 708 aa13.36□□□□□ -0.27
SVIP-202ENST00000525670 CLCN6P51797 869 aa13.34□□□□□ -0.27
SVIP-202ENST00000525670 PAK3O75914 559 aaPredicted RBP13.33□□□□□ -0.28
SVIP-202ENST00000525670 ZNF579Q8NAF0 562 aaKnown RBP13.32□□□□□ -0.28
SVIP-202ENST00000525670 PLCD3Q8N3E9 789 aa13.31□□□□□ -0.28
SVIP-202ENST00000525670 FBXO3Q9UK99 471 aa13.31□□□□□ -0.28
SVIP-202ENST00000525670 ZBTB47Q9UFB7 747 aaPredicted RBP13.22□□□□□ -0.29
SVIP-202ENST00000525670 PHF12Q96QT6 1004 aa13.18□□□□□ -0.3
SVIP-202ENST00000525670 TSPYL2Q9H2G4 693 aaPredicted RBP13.18□□□□□ -0.3
SVIP-202ENST00000525670 RASEFQ8IZ41 740 aa13.13□□□□□ -0.31
SVIP-202ENST00000525670 GALR2O43603 387 aaPredicted RBP13.12□□□□□ -0.31
SVIP-202ENST00000525670 DCBLD2Q96PD2 775 aa13.11□□□□□ -0.31
SVIP-202ENST00000525670 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms