RNA–Protein interactions for RNA: ENST00000523339.1

NPM1-210, Transcript of nucleophosmin 1, humanhuman

TSL 2

Gene NPM1, Length 268 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-210ENST00000523339 AEBP2Q6ZN18 517 aaPredicted RBP15.83■□□□□ 0.12
NPM1-210ENST00000523339 CHIC1Q5VXU3 224 aa14.84□□□□□ -0.03
NPM1-210ENST00000523339 SENP3Q9H4L4 574 aaPredicted RBP13.29□□□□□ -0.28
NPM1-210ENST00000523339 PHF23Q9BUL5 403 aaPredicted RBP13.25□□□□□ -0.29
NPM1-210ENST00000523339 FOXD1Q16676 465 aa12.56□□□□□ -0.4
NPM1-210ENST00000523339 PPP6R1Q9UPN7 881 aa11.78□□□□□ -0.52
NPM1-210ENST00000523339 PLPPR3Q6T4P5 718 aa11.74□□□□□ -0.53
NPM1-210ENST00000523339 ADRA2BP18089 450 aa11.69□□□□□ -0.54
NPM1-210ENST00000523339 PIAS4Q8N2W9 510 aaPredicted RBP11.61□□□□□ -0.55
NPM1-210ENST00000523339 POTEDQ86YR6 584 aa11.6□□□□□ -0.55
NPM1-210ENST00000523339 MSH5O43196 834 aa11.59□□□□□ -0.55
NPM1-210ENST00000523339 MAPK8IP2Q13387 824 aaPredicted RBP10.81□□□□□ -0.68
NPM1-210ENST00000523339 DMRT2Q9Y5R5 561 aa10.59□□□□□ -0.71
NPM1-210ENST00000523339 SCAF1Q9H7N4 1312 aaKnown RBP10.47□□□□□ -0.73
NPM1-210ENST00000523339 PPP4R3CPQ6ZMV5 832 aa10.36□□□□□ -0.75
NPM1-210ENST00000523339 HOXD11P31277 338 aaPredicted RBP10.18□□□□□ -0.78
NPM1-210ENST00000523339 DCAF8L1A6NGE4 600 aa10.14□□□□□ -0.79
NPM1-210ENST00000523339 CNKSR2Q8WXI2 1034 aa10.12□□□□□ -0.79
NPM1-210ENST00000523339 CACNB1Q02641 598 aaPredicted RBP10.06□□□□□ -0.8
NPM1-210ENST00000523339 RNF216Q9NWF9 866 aaPredicted RBP10.04□□□□□ -0.8
NPM1-210ENST00000523339 RNF39Q9H2S5 420 aa9.98□□□□□ -0.81
NPM1-210ENST00000523339 NPM3O75607 178 aaKnown RBP9.81□□□□□ -0.84
NPM1-210ENST00000523339 NCBP3Q53F19 620 aaKnown RBP9.8□□□□□ -0.84
NPM1-210ENST00000523339 C1QBPQ07021 282 aaKnown RBP9.76□□□□□ -0.85
NPM1-210ENST00000523339 DNAJC5BQ9UF47 199 aa9.75□□□□□ -0.85
NPM1-210ENST00000523339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.66□□□□□ -0.863e-17■■□□□ 13
NPM1-210ENST00000523339 KCNA4P22459 653 aa9.59□□□□□ -0.87
NPM1-210ENST00000523339 U3KPZ7 1027 aaPredicted RBP9.52□□□□□ -0.89
NPM1-210ENST00000523339 NISCHQ9Y2I1 1504 aa9.51□□□□□ -0.89
NPM1-210ENST00000523339 SLC4A2P04920 1241 aa9.45□□□□□ -0.9
NPM1-210ENST00000523339 SPINK5Q9NQ38 1064 aaPredicted RBP9.45□□□□□ -0.9
NPM1-210ENST00000523339 DSG3P32926 999 aa9.36□□□□□ -0.91
NPM1-210ENST00000523339 CAPN15O75808 1086 aa9.33□□□□□ -0.92
NPM1-210ENST00000523339 TRHP20396 242 aaPredicted RBP9.19□□□□□ -0.94
NPM1-210ENST00000523339 ABCB7O75027 752 aa9.17□□□□□ -0.94
NPM1-210ENST00000523339 ABCC9O60706 1549 aa9.15□□□□□ -0.94
NPM1-210ENST00000523339 ZNF219Q9P2Y4 722 aaPredicted RBP9.05□□□□□ -0.96
NPM1-210ENST00000523339 POTEHQ6S545 545 aa9.03□□□□□ -0.96
NPM1-210ENST00000523339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.02□□□□□ -0.97
NPM1-210ENST00000523339 HNRNPUL2Q1KMD3 747 aaKnown RBP9.02□□□□□ -0.97
NPM1-210ENST00000523339 SAMD1Q6SPF0 538 aaPredicted RBP9.02□□□□□ -0.97
NPM1-210ENST00000523339 APLP2Q06481 763 aa8.99□□□□□ -0.97
NPM1-210ENST00000523339 ATF5Q9Y2D1 282 aaPredicted RBP8.98□□□□□ -0.97
NPM1-210ENST00000523339 MYCNP04198 464 aaPredicted RBP8.96□□□□□ -0.98
NPM1-210ENST00000523339 POLA2Q14181 598 aa8.95□□□□□ -0.98
NPM1-210ENST00000523339 SLC4A1APQ9BWU0 796 aaKnown RBP8.95□□□□□ -0.98
NPM1-210ENST00000523339 ZBTB22O15209 634 aa8.87□□□□□ -0.99
NPM1-210ENST00000523339 FOXD4L1Q9NU39 408 aa8.86□□□□□ -0.99
NPM1-210ENST00000523339 RBM42Q9BTD8 480 aaKnown RBP8.75□□□□□ -1.01
NPM1-210ENST00000523339 CHRDL2Q6WN34 429 aa8.7□□□□□ -1.02
NPM1-210ENST00000523339 OSCARQ8IYS5 282 aa8.64□□□□□ -1.03
NPM1-210ENST00000523339 CCDC180Q9P1Z9 1646 aa8.63□□□□□ -1.03
NPM1-210ENST00000523339 AKT1S1Q96B36 256 aa8.62□□□□□ -1.03
NPM1-210ENST00000523339 REM2Q8IYK8 340 aaPredicted RBP8.61□□□□□ -1.03
NPM1-210ENST00000523339 ATXN8OSP0DMR3 200 aa8.56□□□□□ -1.04
NPM1-210ENST00000523339 ZBTB12Q9Y330 459 aaPredicted RBP8.56□□□□□ -1.04
NPM1-210ENST00000523339 PIP4P2Q8N4L2 257 aa8.53□□□□□ -1.04
NPM1-210ENST00000523339 MKRN4PQ13434 485 aaPredicted RBP8.52□□□□□ -1.05
NPM1-210ENST00000523339 PABPN1Q86U42 306 aaKnown RBP eCLIP8.52□□□□□ -1.05
NPM1-210ENST00000523339 PITPNM1O00562 1244 aa8.51□□□□□ -1.05
NPM1-210ENST00000523339 RB1CC1Q8TDY2 1594 aa8.49□□□□□ -1.05
NPM1-210ENST00000523339 DCAF8L2P0C7V8 631 aa8.48□□□□□ -1.05
NPM1-210ENST00000523339 FXR2P51116 673 aaKnown RBP eCLIP8.47□□□□□ -1.05
NPM1-210ENST00000523339 DNAJC5Q9H3Z4 198 aa8.44□□□□□ -1.06
NPM1-210ENST00000523339 EVX2Q03828 476 aa8.43□□□□□ -1.06
NPM1-210ENST00000523339 SP7Q8TDD2 431 aaPredicted RBP8.41□□□□□ -1.06
NPM1-210ENST00000523339 SPDYE2BA6NHP3 402 aa8.39□□□□□ -1.07
NPM1-210ENST00000523339 SPDYE6P0CI01 402 aa8.39□□□□□ -1.07
NPM1-210ENST00000523339 SPDYE2Q495Y8 402 aa8.39□□□□□ -1.07
NPM1-210ENST00000523339 FBLN2P98095 1184 aa8.38□□□□□ -1.07
NPM1-210ENST00000523339 CSRNP3Q8WYN3 585 aa8.38□□□□□ -1.07
NPM1-210ENST00000523339 HAX1O00165 279 aa8.36□□□□□ -1.07
NPM1-210ENST00000523339 ZNF692Q9BU19 519 aaPredicted RBP8.33□□□□□ -1.08
NPM1-210ENST00000523339 SSUH2Q9Y2M2 353 aa8.33□□□□□ -1.08
NPM1-210ENST00000523339 NACADO15069 1562 aa8.31□□□□□ -1.08
NPM1-210ENST00000523339 CLEC11AQ9Y240 323 aa8.31□□□□□ -1.08
NPM1-210ENST00000523339 PRKAR2AP13861 404 aaKnown RBP8.28□□□□□ -1.08
NPM1-210ENST00000523339 CECR2Q9BXF3 1484 aa8.27□□□□□ -1.09
NPM1-210ENST00000523339 CHADLQ6NUI6 762 aa8.25□□□□□ -1.09
NPM1-210ENST00000523339 SPDYE1Q8NFV5 336 aaPredicted RBP8.25□□□□□ -1.09
NPM1-210ENST00000523339 C19orf67A6NJJ6 358 aa8.19□□□□□ -1.1
NPM1-210ENST00000523339 CC2D2AQ9P2K1 1620 aa8.16□□□□□ -1.1
NPM1-210ENST00000523339 EHMT2Q96KQ7 1210 aa8.15□□□□□ -1.1
NPM1-210ENST00000523339 BICRAQ9NZM4 1560 aa8.14□□□□□ -1.11
NPM1-210ENST00000523339 PRR29P0C7W0 189 aa8.13□□□□□ -1.11
NPM1-210ENST00000523339 UNC13AQ9UPW8 1703 aa8.12□□□□□ -1.11
NPM1-210ENST00000523339 GABBR2O75899 941 aa8.11□□□□□ -1.11
NPM1-210ENST00000523339 TRIM41Q8WV44 630 aa8.07□□□□□ -1.12
NPM1-210ENST00000523339 SHROOM4Q9ULL8 1493 aa8.06□□□□□ -1.12
NPM1-210ENST00000523339 EIF4G1Q04637 1599 aaKnown RBP8.05□□□□□ -1.12
NPM1-210ENST00000523339 FARP1Q9Y4F1 1045 aaPredicted RBP8.04□□□□□ -1.12
NPM1-210ENST00000523339 POTEIP0CG38 1075 aa8.03□□□□□ -1.12
NPM1-210ENST00000523339 MYO15BQ96JP2 1530 aa8.02□□□□□ -1.13
NPM1-210ENST00000523339 ERCC6Q03468 1493 aa8□□□□□ -1.13
NPM1-210ENST00000523339 CREBZFQ9NS37 354 aa8□□□□□ -1.13
NPM1-210ENST00000523339 CUX2O14529 1486 aa8□□□□□ -1.13
NPM1-210ENST00000523339 CD44P16070 742 aaKnown RBP7.98□□□□□ -1.13
NPM1-210ENST00000523339 SPDYE4A6NLX3 237 aa7.97□□□□□ -1.13
NPM1-210ENST00000523339 SCRIBQ14160 1630 aa7.96□□□□□ -1.13
NPM1-210ENST00000523339 LHX8Q68G74 356 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms