RNA–Protein interactions for RNA: ENST00000522802.5

VPS13B-211, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-211ENST00000522802 AEBP2Q6ZN18 517 aaPredicted RBP25.47■■□□□ 1.67
VPS13B-211ENST00000522802 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
VPS13B-211ENST00000522802 SENP3Q9H4L4 574 aaPredicted RBP21.7■■□□□ 1.06
VPS13B-211ENST00000522802 PHF23Q9BUL5 403 aaPredicted RBP21.42■■□□□ 1.02
VPS13B-211ENST00000522802 FOXD1Q16676 465 aa20.3■□□□□ 0.84
VPS13B-211ENST00000522802 PLPPR3Q6T4P5 718 aa19.23■□□□□ 0.67
VPS13B-211ENST00000522802 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
VPS13B-211ENST00000522802 MSH5O43196 834 aa19.06■□□□□ 0.64
VPS13B-211ENST00000522802 PIAS4Q8N2W9 510 aaPredicted RBP18.89■□□□□ 0.61
VPS13B-211ENST00000522802 PPP6R1Q9UPN7 881 aa18.8■□□□□ 0.6
VPS13B-211ENST00000522802 ADRA2BP18089 450 aa18.71■□□□□ 0.59
VPS13B-211ENST00000522802 MAPK8IP2Q13387 824 aaPredicted RBP17.29■□□□□ 0.36
VPS13B-211ENST00000522802 DMRT2Q9Y5R5 561 aa17.18■□□□□ 0.34
VPS13B-211ENST00000522802 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
VPS13B-211ENST00000522802 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
VPS13B-211ENST00000522802 KCNA4P22459 653 aa16.71■□□□□ 0.27
VPS13B-211ENST00000522802 CACNB1Q02641 598 aaPredicted RBP16.56■□□□□ 0.24
VPS13B-211ENST00000522802 NCBP3Q53F19 620 aaKnown RBP16.54■□□□□ 0.24
VPS13B-211ENST00000522802 DCAF8L1A6NGE4 600 aa16.51■□□□□ 0.23
VPS13B-211ENST00000522802 NISCHQ9Y2I1 1504 aa16.49■□□□□ 0.23
VPS13B-211ENST00000522802 CNKSR2Q8WXI2 1034 aa16.47■□□□□ 0.23
VPS13B-211ENST00000522802 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
VPS13B-211ENST00000522802 NPM3O75607 178 aaKnown RBP16.32■□□□□ 0.2
VPS13B-211ENST00000522802 RNF39Q9H2S5 420 aa16.27■□□□□ 0.2
VPS13B-211ENST00000522802 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
VPS13B-211ENST00000522802 C1QBPQ07021 282 aaKnown RBP15.98■□□□□ 0.15
VPS13B-211ENST00000522802 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
VPS13B-211ENST00000522802 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
VPS13B-211ENST00000522802 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS13B-211ENST00000522802 EHMT2Q96KQ7 1210 aa15.57■□□□□ 0.08
VPS13B-211ENST00000522802 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
VPS13B-211ENST00000522802 SLC4A2P04920 1241 aa15.4■□□□□ 0.06
VPS13B-211ENST00000522802 ZBTB22O15209 634 aa15.39■□□□□ 0.05
VPS13B-211ENST00000522802 ABCC9O60706 1549 aa15.38■□□□□ 0.05
VPS13B-211ENST00000522802 FOXD4L1Q9NU39 408 aa15.32■□□□□ 0.04
VPS13B-211ENST00000522802 U3KPZ7 1027 aaPredicted RBP15.32■□□□□ 0.04
VPS13B-211ENST00000522802 SPINK5Q9NQ38 1064 aaPredicted RBP15.2■□□□□ 0.02
VPS13B-211ENST00000522802 CAPN15O75808 1086 aa15.16■□□□□ 0.02
VPS13B-211ENST00000522802 DSG3P32926 999 aa15.15■□□□□ 0.02
VPS13B-211ENST00000522802 MYCNP04198 464 aaPredicted RBP15.06■□□□□ 0
VPS13B-211ENST00000522802 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
VPS13B-211ENST00000522802 POTEHQ6S545 545 aa14.94□□□□□ -0.02
VPS13B-211ENST00000522802 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
VPS13B-211ENST00000522802 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
VPS13B-211ENST00000522802 TRHP20396 242 aaPredicted RBP14.86□□□□□ -0.03
VPS13B-211ENST00000522802 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
VPS13B-211ENST00000522802 ABCB7O75027 752 aa14.81□□□□□ -0.04
VPS13B-211ENST00000522802 SAMD1Q6SPF0 538 aaPredicted RBP14.81□□□□□ -0.04
VPS13B-211ENST00000522802 ZNF219Q9P2Y4 722 aaPredicted RBP14.78□□□□□ -0.04
VPS13B-211ENST00000522802 APLP2Q06481 763 aa14.77□□□□□ -0.05
VPS13B-211ENST00000522802 ATF5Q9Y2D1 282 aaPredicted RBP14.68□□□□□ -0.06
VPS13B-211ENST00000522802 RB1CC1Q8TDY2 1594 aa14.44□□□□□ -0.1
VPS13B-211ENST00000522802 RBM42Q9BTD8 480 aaKnown RBP14.41□□□□□ -0.1
VPS13B-211ENST00000522802 POLA2Q14181 598 aa14.39□□□□□ -0.11
VPS13B-211ENST00000522802 CHRDL2Q6WN34 429 aa14.25□□□□□ -0.13
VPS13B-211ENST00000522802 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
VPS13B-211ENST00000522802 NACADO15069 1562 aa14.23□□□□□ -0.13
VPS13B-211ENST00000522802 PABPN1Q86U42 306 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS13B-211ENST00000522802 BICRAQ9NZM4 1560 aa14.1□□□□□ -0.15
VPS13B-211ENST00000522802 MKRN4PQ13434 485 aaPredicted RBP14.05□□□□□ -0.16
VPS13B-211ENST00000522802 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
VPS13B-211ENST00000522802 ZBTB12Q9Y330 459 aaPredicted RBP14.02□□□□□ -0.17
VPS13B-211ENST00000522802 FBLN2P98095 1184 aa14□□□□□ -0.17
VPS13B-211ENST00000522802 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
VPS13B-211ENST00000522802 DCAF8L2P0C7V8 631 aa13.95□□□□□ -0.18
VPS13B-211ENST00000522802 REM2Q8IYK8 340 aaPredicted RBP13.93□□□□□ -0.18
VPS13B-211ENST00000522802 CC2D2AQ9P2K1 1620 aa13.9□□□□□ -0.19
VPS13B-211ENST00000522802 MYO15BQ96JP2 1530 aa13.89□□□□□ -0.19
VPS13B-211ENST00000522802 CECR2Q9BXF3 1484 aa13.87□□□□□ -0.19
VPS13B-211ENST00000522802 FKBP8Q14318 412 aa13.87□□□□□ -0.19
VPS13B-211ENST00000522802 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
VPS13B-211ENST00000522802 SP7Q8TDD2 431 aaPredicted RBP13.86□□□□□ -0.19
VPS13B-211ENST00000522802 PITPNM1O00562 1244 aa13.8□□□□□ -0.2
VPS13B-211ENST00000522802 SHROOM4Q9ULL8 1493 aa13.8□□□□□ -0.2
VPS13B-211ENST00000522802 EIF4G1Q04637 1599 aaKnown RBP13.76□□□□□ -0.21
VPS13B-211ENST00000522802 SPDYE4A6NLX3 237 aa13.76□□□□□ -0.21
VPS13B-211ENST00000522802 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
VPS13B-211ENST00000522802 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.21
VPS13B-211ENST00000522802 SCRIBQ14160 1630 aa13.69□□□□□ -0.22
VPS13B-211ENST00000522802 HAX1O00165 279 aa13.67□□□□□ -0.22
VPS13B-211ENST00000522802 SPDYE2BA6NHP3 402 aa13.66□□□□□ -0.22
VPS13B-211ENST00000522802 SPDYE6P0CI01 402 aa13.66□□□□□ -0.22
VPS13B-211ENST00000522802 SPDYE2Q495Y8 402 aa13.66□□□□□ -0.22
VPS13B-211ENST00000522802 ZNF692Q9BU19 519 aaPredicted RBP13.62□□□□□ -0.23
VPS13B-211ENST00000522802 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
VPS13B-211ENST00000522802 PROM2Q8N271 834 aa13.61□□□□□ -0.23
VPS13B-211ENST00000522802 SSUH2Q9Y2M2 353 aa13.59□□□□□ -0.23
VPS13B-211ENST00000522802 DCAF1Q9Y4B6 1507 aa13.58□□□□□ -0.24
VPS13B-211ENST00000522802 EVX2Q03828 476 aa13.53□□□□□ -0.24
VPS13B-211ENST00000522802 CLEC11AQ9Y240 323 aa13.45□□□□□ -0.26
VPS13B-211ENST00000522802 PRKAR2AP13861 404 aaKnown RBP13.43□□□□□ -0.26
VPS13B-211ENST00000522802 SPDYE1Q8NFV5 336 aaPredicted RBP13.42□□□□□ -0.26
VPS13B-211ENST00000522802 CUX2O14529 1486 aa13.38□□□□□ -0.27
VPS13B-211ENST00000522802 FBXO3Q9UK99 471 aa13.36□□□□□ -0.27
VPS13B-211ENST00000522802 C19orf67A6NJJ6 358 aa13.29□□□□□ -0.28
VPS13B-211ENST00000522802 ERCC6Q03468 1493 aa13.27□□□□□ -0.29
VPS13B-211ENST00000522802 STAG3Q9UJ98 1225 aa13.26□□□□□ -0.29
VPS13B-211ENST00000522802 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
VPS13B-211ENST00000522802 GABBR2O75899 941 aa13.18□□□□□ -0.3
VPS13B-211ENST00000522802 PRR29P0C7W0 189 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms