RNA–Protein interactions for RNA: ENST00000522658.5

PABPC1-220, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2

Gene PABPC1, Length 736 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-220ENST00000522658 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
PABPC1-220ENST00000522658 CHIC1Q5VXU3 224 aa24.24■■□□□ 1.47
PABPC1-220ENST00000522658 SENP3Q9H4L4 574 aaPredicted RBP21.71■■□□□ 1.07
PABPC1-220ENST00000522658 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
PABPC1-220ENST00000522658 FOXD1Q16676 465 aa20.27■□□□□ 0.84
PABPC1-220ENST00000522658 PLPPR3Q6T4P5 718 aa19.35■□□□□ 0.69
PABPC1-220ENST00000522658 PPP6R1Q9UPN7 881 aa18.99■□□□□ 0.63
PABPC1-220ENST00000522658 MSH5O43196 834 aa18.92■□□□□ 0.62
PABPC1-220ENST00000522658 ADRA2BP18089 450 aa18.89■□□□□ 0.61
PABPC1-220ENST00000522658 PIAS4Q8N2W9 510 aaPredicted RBP18.89■□□□□ 0.61
PABPC1-220ENST00000522658 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
PABPC1-220ENST00000522658 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
PABPC1-220ENST00000522658 DMRT2Q9Y5R5 561 aa17.25■□□□□ 0.35
PABPC1-220ENST00000522658 SCAF1Q9H7N4 1312 aaKnown RBP17.23■□□□□ 0.35
PABPC1-220ENST00000522658 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
PABPC1-220ENST00000522658 HOXD11P31277 338 aaPredicted RBP16.65■□□□□ 0.26
PABPC1-220ENST00000522658 CNKSR2Q8WXI2 1034 aa16.65■□□□□ 0.26
PABPC1-220ENST00000522658 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
PABPC1-220ENST00000522658 DCAF8L1A6NGE4 600 aa16.42■□□□□ 0.22
PABPC1-220ENST00000522658 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
PABPC1-220ENST00000522658 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
PABPC1-220ENST00000522658 RNF39Q9H2S5 420 aa16.18■□□□□ 0.18
PABPC1-220ENST00000522658 NPM3O75607 178 aaKnown RBP16.11■□□□□ 0.17
PABPC1-220ENST00000522658 DNAJC5BQ9UF47 199 aa16.09■□□□□ 0.17
PABPC1-220ENST00000522658 C1QBPQ07021 282 aaKnown RBP15.92■□□□□ 0.14
PABPC1-220ENST00000522658 KCNA4P22459 653 aa15.81■□□□□ 0.12
PABPC1-220ENST00000522658 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.11
PABPC1-220ENST00000522658 U3KPZ7 1027 aaPredicted RBP15.52■□□□□ 0.08
PABPC1-220ENST00000522658 NISCHQ9Y2I1 1504 aa15.51■□□□□ 0.07
PABPC1-220ENST00000522658 SLC4A2P04920 1241 aa15.41■□□□□ 0.06
PABPC1-220ENST00000522658 SPINK5Q9NQ38 1064 aaPredicted RBP15.27■□□□□ 0.04
PABPC1-220ENST00000522658 CAPN15O75808 1086 aa15.17■□□□□ 0.02
PABPC1-220ENST00000522658 DSG3P32926 999 aa15.16■□□□□ 0.02
PABPC1-220ENST00000522658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.01□□□□□ -0.01
PABPC1-220ENST00000522658 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
PABPC1-220ENST00000522658 APLP2Q06481 763 aa15□□□□□ -0.01
PABPC1-220ENST00000522658 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
PABPC1-220ENST00000522658 SAMD1Q6SPF0 538 aaPredicted RBP14.94□□□□□ -0.02
PABPC1-220ENST00000522658 ZNF219Q9P2Y4 722 aaPredicted RBP14.94□□□□□ -0.02
PABPC1-220ENST00000522658 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
PABPC1-220ENST00000522658 MYCNP04198 464 aaPredicted RBP14.87□□□□□ -0.03
PABPC1-220ENST00000522658 ABCB7O75027 752 aa14.85□□□□□ -0.03
PABPC1-220ENST00000522658 FOXD4L1Q9NU39 408 aa14.73□□□□□ -0.05
PABPC1-220ENST00000522658 POLA2Q14181 598 aa14.58□□□□□ -0.08
PABPC1-220ENST00000522658 ZBTB22O15209 634 aa14.57□□□□□ -0.08
PABPC1-220ENST00000522658 ATF5Q9Y2D1 282 aaPredicted RBP14.57□□□□□ -0.08
PABPC1-220ENST00000522658 POTEHQ6S545 545 aa14.44□□□□□ -0.1
PABPC1-220ENST00000522658 RBM42Q9BTD8 480 aaKnown RBP14.41□□□□□ -0.1
PABPC1-220ENST00000522658 ATXN8OSP0DMR3 200 aa14.3□□□□□ -0.12
PABPC1-220ENST00000522658 ZBTB12Q9Y330 459 aaPredicted RBP14.26□□□□□ -0.13
PABPC1-220ENST00000522658 ABCC9O60706 1549 aa14.17□□□□□ -0.14
PABPC1-220ENST00000522658 AKT1S1Q96B36 256 aa14.12□□□□□ -0.15
PABPC1-220ENST00000522658 OSCARQ8IYS5 282 aa14.11□□□□□ -0.15
PABPC1-220ENST00000522658 CHRDL2Q6WN34 429 aa14.1□□□□□ -0.15
PABPC1-220ENST00000522658 CCDC180Q9P1Z9 1646 aa14.04□□□□□ -0.16
PABPC1-220ENST00000522658 REM2Q8IYK8 340 aaPredicted RBP13.98□□□□□ -0.17
PABPC1-220ENST00000522658 FBLN2P98095 1184 aa13.91□□□□□ -0.18
PABPC1-220ENST00000522658 MKRN4PQ13434 485 aaPredicted RBP13.91□□□□□ -0.18
PABPC1-220ENST00000522658 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
PABPC1-220ENST00000522658 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
PABPC1-220ENST00000522658 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
PABPC1-220ENST00000522658 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
PABPC1-220ENST00000522658 PITPNM1O00562 1244 aa13.84□□□□□ -0.19
PABPC1-220ENST00000522658 PIP4P2Q8N4L2 257 aa13.79□□□□□ -0.2
PABPC1-220ENST00000522658 FXR2P51116 673 aaKnown RBP eCLIP13.74□□□□□ -0.21
PABPC1-220ENST00000522658 SSUH2Q9Y2M2 353 aa13.71□□□□□ -0.21
PABPC1-220ENST00000522658 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
PABPC1-220ENST00000522658 EHMT2Q96KQ7 1210 aa13.65□□□□□ -0.22
PABPC1-220ENST00000522658 SPDYE1Q8NFV5 336 aaPredicted RBP13.59□□□□□ -0.23
PABPC1-220ENST00000522658 SP7Q8TDD2 431 aaPredicted RBP13.55□□□□□ -0.24
PABPC1-220ENST00000522658 CLEC11AQ9Y240 323 aa13.53□□□□□ -0.24
PABPC1-220ENST00000522658 HAX1O00165 279 aa13.48□□□□□ -0.25
PABPC1-220ENST00000522658 RB1CC1Q8TDY2 1594 aa13.47□□□□□ -0.25
PABPC1-220ENST00000522658 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
PABPC1-220ENST00000522658 PRKAR2AP13861 404 aaKnown RBP13.45□□□□□ -0.26
PABPC1-220ENST00000522658 EVX2Q03828 476 aa13.4□□□□□ -0.26
PABPC1-220ENST00000522658 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
PABPC1-220ENST00000522658 CHADLQ6NUI6 762 aa13.31□□□□□ -0.28
PABPC1-220ENST00000522658 NACADO15069 1562 aa13.3□□□□□ -0.28
PABPC1-220ENST00000522658 C19orf67A6NJJ6 358 aa13.3□□□□□ -0.28
PABPC1-220ENST00000522658 DCAF8L2P0C7V8 631 aa13.26□□□□□ -0.29
PABPC1-220ENST00000522658 SPDYE4A6NLX3 237 aa13.2□□□□□ -0.3
PABPC1-220ENST00000522658 FARP1Q9Y4F1 1045 aaPredicted RBP13.13□□□□□ -0.31
PABPC1-220ENST00000522658 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
PABPC1-220ENST00000522658 GABBR2O75899 941 aa13.07□□□□□ -0.32
PABPC1-220ENST00000522658 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
PABPC1-220ENST00000522658 UNC13AQ9UPW8 1703 aa13.05□□□□□ -0.32
PABPC1-220ENST00000522658 CD44P16070 742 aaKnown RBP13.02□□□□□ -0.33
PABPC1-220ENST00000522658 MYO15BQ96JP2 1530 aa13.02□□□□□ -0.33
PABPC1-220ENST00000522658 PROM2Q8N271 834 aa12.98□□□□□ -0.33
PABPC1-220ENST00000522658 BICRAQ9NZM4 1560 aa12.94□□□□□ -0.34
PABPC1-220ENST00000522658 MNX1P50219 401 aaPredicted RBP12.88□□□□□ -0.35
PABPC1-220ENST00000522658 SHROOM4Q9ULL8 1493 aa12.88□□□□□ -0.35
PABPC1-220ENST00000522658 CLCN6P51797 869 aa12.87□□□□□ -0.35
PABPC1-220ENST00000522658 ZNF579Q8NAF0 562 aaKnown RBP12.86□□□□□ -0.35
PABPC1-220ENST00000522658 ZCCHC6Q5VYS8 1495 aaKnown RBP12.84□□□□□ -0.35
PABPC1-220ENST00000522658 POTEIP0CG38 1075 aa12.83□□□□□ -0.36
PABPC1-220ENST00000522658 ZRANB1Q9UGI0 708 aa12.83□□□□□ -0.36
PABPC1-220ENST00000522658 SCRIBQ14160 1630 aa12.8□□□□□ -0.36
PABPC1-220ENST00000522658 DCAF1Q9Y4B6 1507 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms