RNA–Protein interactions for RNA: ENST00000522045.5

SGCE-211, Transcript of sarcoglycan epsilon, humanhuman

TSL 3

Gene SGCE, Length 408 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-211ENST00000522045 AEBP2Q6ZN18 517 aaPredicted RBP34.07■■■■□ 3.04
SGCE-211ENST00000522045 CHIC1Q5VXU3 224 aa32.68■■■□□ 2.82
SGCE-211ENST00000522045 SENP3Q9H4L4 574 aaPredicted RBP29.1■■■□□ 2.25
SGCE-211ENST00000522045 PHF23Q9BUL5 403 aaPredicted RBP28.72■■■□□ 2.19
SGCE-211ENST00000522045 FOXD1Q16676 465 aa27.03■■□□□ 1.92
SGCE-211ENST00000522045 PLPPR3Q6T4P5 718 aa26.28■■□□□ 1.8
SGCE-211ENST00000522045 PPP6R1Q9UPN7 881 aa25.47■■□□□ 1.67
SGCE-211ENST00000522045 ADRA2BP18089 450 aa25.42■■□□□ 1.66
SGCE-211ENST00000522045 PIAS4Q8N2W9 510 aaPredicted RBP25.38■■□□□ 1.65
SGCE-211ENST00000522045 MSH5O43196 834 aa25.26■■□□□ 1.63
SGCE-211ENST00000522045 POTEDQ86YR6 584 aa24.1■■□□□ 1.45
SGCE-211ENST00000522045 SCAF1Q9H7N4 1312 aaKnown RBP23.34■■□□□ 1.33
SGCE-211ENST00000522045 MAPK8IP2Q13387 824 aaPredicted RBP23.24■■□□□ 1.31
SGCE-211ENST00000522045 DMRT2Q9Y5R5 561 aa23.1■■□□□ 1.29
SGCE-211ENST00000522045 PPP4R3CPQ6ZMV5 832 aa23.04■■□□□ 1.28
SGCE-211ENST00000522045 CNKSR2Q8WXI2 1034 aa22.57■■□□□ 1.2
SGCE-211ENST00000522045 HOXD11P31277 338 aaPredicted RBP22.36■■□□□ 1.17
SGCE-211ENST00000522045 NCBP3Q53F19 620 aaKnown RBP22.3■■□□□ 1.16
SGCE-211ENST00000522045 RNF216Q9NWF9 866 aaPredicted RBP22.29■■□□□ 1.16
SGCE-211ENST00000522045 DCAF8L1A6NGE4 600 aa22.16■■□□□ 1.14
SGCE-211ENST00000522045 NPM3O75607 178 aaKnown RBP21.91■■□□□ 1.1
SGCE-211ENST00000522045 KCNA4P22459 653 aa21.74■■□□□ 1.07
SGCE-211ENST00000522045 DNAJC5BQ9UF47 199 aa21.56■■□□□ 1.04
SGCE-211ENST00000522045 RNF39Q9H2S5 420 aa21.54■■□□□ 1.04
SGCE-211ENST00000522045 CACNB1Q02641 598 aaPredicted RBP21.48■■□□□ 1.03
SGCE-211ENST00000522045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.33■■□□□ 1.01
SGCE-211ENST00000522045 C1QBPQ07021 282 aaKnown RBP21.27■■□□□ 1
SGCE-211ENST00000522045 U3KPZ7 1027 aaPredicted RBP20.88■□□□□ 0.93
SGCE-211ENST00000522045 SLC4A2P04920 1241 aa20.83■□□□□ 0.93
SGCE-211ENST00000522045 SLC4A1APQ9BWU0 796 aaKnown RBP20.62■□□□□ 0.89
SGCE-211ENST00000522045 CAPN15O75808 1086 aa20.48■□□□□ 0.87
SGCE-211ENST00000522045 SPINK5Q9NQ38 1064 aaPredicted RBP20.48■□□□□ 0.87
SGCE-211ENST00000522045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
SGCE-211ENST00000522045 HNRNPUL2Q1KMD3 747 aaKnown RBP20.47■□□□□ 0.87
SGCE-211ENST00000522045 APLP2Q06481 763 aa20.43■□□□□ 0.86
SGCE-211ENST00000522045 SAMD1Q6SPF0 538 aaPredicted RBP20.35■□□□□ 0.85
SGCE-211ENST00000522045 MYCNP04198 464 aaPredicted RBP20.31■□□□□ 0.84
SGCE-211ENST00000522045 DSG3P32926 999 aa20.26■□□□□ 0.83
SGCE-211ENST00000522045 FOXD4L1Q9NU39 408 aa20.25■□□□□ 0.83
SGCE-211ENST00000522045 ZNF219Q9P2Y4 722 aaPredicted RBP20.22■□□□□ 0.83
SGCE-211ENST00000522045 TRHP20396 242 aaPredicted RBP20.21■□□□□ 0.83
SGCE-211ENST00000522045 ABCB7O75027 752 aa20■□□□□ 0.79
SGCE-211ENST00000522045 ZBTB22O15209 634 aa19.97■□□□□ 0.79
SGCE-211ENST00000522045 ATF5Q9Y2D1 282 aaPredicted RBP19.74■□□□□ 0.75
SGCE-211ENST00000522045 POLA2Q14181 598 aa19.72■□□□□ 0.75
SGCE-211ENST00000522045 ATXN8OSP0DMR3 200 aa19.6■□□□□ 0.73
SGCE-211ENST00000522045 ZBTB12Q9Y330 459 aaPredicted RBP19.41■□□□□ 0.7
SGCE-211ENST00000522045 RBM42Q9BTD8 480 aaKnown RBP19.39■□□□□ 0.69
SGCE-211ENST00000522045 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
SGCE-211ENST00000522045 EHMT2Q96KQ7 1210 aa19.27■□□□□ 0.68
SGCE-211ENST00000522045 OSCARQ8IYS5 282 aa19.1■□□□□ 0.65
SGCE-211ENST00000522045 FBLN2P98095 1184 aa19.05■□□□□ 0.64
SGCE-211ENST00000522045 POTEHQ6S545 545 aa18.97■□□□□ 0.63
SGCE-211ENST00000522045 AKT1S1Q96B36 256 aa18.97■□□□□ 0.63
SGCE-211ENST00000522045 MKRN4PQ13434 485 aaPredicted RBP18.86■□□□□ 0.61
SGCE-211ENST00000522045 SPDYE2BA6NHP3 402 aa18.81■□□□□ 0.6
SGCE-211ENST00000522045 SPDYE6P0CI01 402 aa18.81■□□□□ 0.6
SGCE-211ENST00000522045 SPDYE2Q495Y8 402 aa18.81■□□□□ 0.6
SGCE-211ENST00000522045 CHRDL2Q6WN34 429 aa18.81■□□□□ 0.6
SGCE-211ENST00000522045 REM2Q8IYK8 340 aaPredicted RBP18.77■□□□□ 0.6
SGCE-211ENST00000522045 ZNF692Q9BU19 519 aaPredicted RBP18.61■□□□□ 0.57
SGCE-211ENST00000522045 PITPNM1O00562 1244 aa18.57■□□□□ 0.56
SGCE-211ENST00000522045 SSUH2Q9Y2M2 353 aa18.56■□□□□ 0.56
SGCE-211ENST00000522045 SPDYE1Q8NFV5 336 aaPredicted RBP18.42■□□□□ 0.54
SGCE-211ENST00000522045 PIP4P2Q8N4L2 257 aa18.4■□□□□ 0.54
SGCE-211ENST00000522045 FXR2P51116 673 aaKnown RBP eCLIP18.35■□□□□ 0.53
SGCE-211ENST00000522045 CLEC11AQ9Y240 323 aa18.35■□□□□ 0.53
SGCE-211ENST00000522045 PABPN1Q86U42 306 aaKnown RBP eCLIP18.34■□□□□ 0.53
SGCE-211ENST00000522045 SPDYE4A6NLX3 237 aa18.16■□□□□ 0.5
SGCE-211ENST00000522045 PRKAR2AP13861 404 aaKnown RBP18.11■□□□□ 0.49
SGCE-211ENST00000522045 PRR29P0C7W0 189 aa18.1■□□□□ 0.49
SGCE-211ENST00000522045 HAX1O00165 279 aa18.01■□□□□ 0.47
SGCE-211ENST00000522045 CHADLQ6NUI6 762 aa17.94■□□□□ 0.46
SGCE-211ENST00000522045 STAG3Q9UJ98 1225 aa17.94■□□□□ 0.46
SGCE-211ENST00000522045 SP7Q8TDD2 431 aaPredicted RBP17.92■□□□□ 0.46
SGCE-211ENST00000522045 C19orf67A6NJJ6 358 aa17.75■□□□□ 0.43
SGCE-211ENST00000522045 EVX2Q03828 476 aa17.74■□□□□ 0.43
SGCE-211ENST00000522045 PROM2Q8N271 834 aa17.74■□□□□ 0.43
SGCE-211ENST00000522045 FARP1Q9Y4F1 1045 aaPredicted RBP17.72■□□□□ 0.43
SGCE-211ENST00000522045 CREBZFQ9NS37 354 aa17.68■□□□□ 0.42
SGCE-211ENST00000522045 CD44P16070 742 aaKnown RBP17.55■□□□□ 0.4
SGCE-211ENST00000522045 FKBP8Q14318 412 aa17.55■□□□□ 0.4
SGCE-211ENST00000522045 NPM1P06748 294 aaKnown RBP eCLIP17.42■□□□□ 0.38
SGCE-211ENST00000522045 GABBR2O75899 941 aa17.41■□□□□ 0.38
SGCE-211ENST00000522045 MNX1P50219 401 aaPredicted RBP17.4■□□□□ 0.38
SGCE-211ENST00000522045 ZRANB1Q9UGI0 708 aa17.35■□□□□ 0.37
SGCE-211ENST00000522045 PLEKHG5O94827 1062 aa17.33■□□□□ 0.36
SGCE-211ENST00000522045 PAK3O75914 559 aaPredicted RBP17.32■□□□□ 0.36
SGCE-211ENST00000522045 CLCN6P51797 869 aa17.31■□□□□ 0.36
SGCE-211ENST00000522045 MIER1Q8N108 512 aa17.3■□□□□ 0.36
SGCE-211ENST00000522045 ZNF579Q8NAF0 562 aaKnown RBP17.3■□□□□ 0.36
SGCE-211ENST00000522045 PLCD3Q8N3E9 789 aa17.22■□□□□ 0.35
SGCE-211ENST00000522045 FBXO3Q9UK99 471 aa17.15■□□□□ 0.34
SGCE-211ENST00000522045 PHF12Q96QT6 1004 aa17.11■□□□□ 0.33
SGCE-211ENST00000522045 ZBTB47Q9UFB7 747 aaPredicted RBP17.11■□□□□ 0.33
SGCE-211ENST00000522045 TSPYL2Q9H2G4 693 aaPredicted RBP17.08■□□□□ 0.32
SGCE-211ENST00000522045 DCBLD2Q96PD2 775 aa17.05■□□□□ 0.32
SGCE-211ENST00000522045 GALR2O43603 387 aaPredicted RBP17.04■□□□□ 0.32
SGCE-211ENST00000522045 POTEIP0CG38 1075 aa17.01■□□□□ 0.31
SGCE-211ENST00000522045 RASEFQ8IZ41 740 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms