RNA–Protein interactions for RNA: ENST00000521580.2

SMIM12-206, Transcript of small integral membrane protein 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMIM12, Length 3,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM12-206ENST00000521580 NISCHQ9Y2I1 1504 aa30.11■■■□□ 2.41
SMIM12-206ENST00000521580 CCDC180Q9P1Z9 1646 aa25.8■■□□□ 1.72
SMIM12-206ENST00000521580 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
SMIM12-206ENST00000521580 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
SMIM12-206ENST00000521580 DCAF8L2P0C7V8 631 aa25.21■■□□□ 1.63
SMIM12-206ENST00000521580 DCAF1Q9Y4B6 1507 aa24.72■■□□□ 1.55
SMIM12-206ENST00000521580 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
SMIM12-206ENST00000521580 ABCC9O60706 1549 aa24.34■■□□□ 1.49
SMIM12-206ENST00000521580 MYO15BQ96JP2 1530 aa24.18■■□□□ 1.46
SMIM12-206ENST00000521580 SCRIBQ14160 1630 aa24.11■■□□□ 1.45
SMIM12-206ENST00000521580 NACADO15069 1562 aa24.01■■□□□ 1.43
SMIM12-206ENST00000521580 CHIC1Q5VXU3 224 aa23.75■■□□□ 1.39
SMIM12-206ENST00000521580 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
SMIM12-206ENST00000521580 RSF1Q96T23 1441 aaPredicted RBP23.66■■□□□ 1.38
SMIM12-206ENST00000521580 CECR2Q9BXF3 1484 aa23.5■■□□□ 1.35
SMIM12-206ENST00000521580 MROH2BQ7Z745 1585 aa23.37■■□□□ 1.33
SMIM12-206ENST00000521580 UNC13AQ9UPW8 1703 aa23.21■■□□□ 1.31
SMIM12-206ENST00000521580 PABPN1Q86U42 306 aaKnown RBP eCLIP23.2■■□□□ 1.31
SMIM12-206ENST00000521580 WIZO95785 1651 aa23.19■■□□□ 1.3
SMIM12-206ENST00000521580 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
SMIM12-206ENST00000521580 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
SMIM12-206ENST00000521580 LOC105371045A0A1W2PR82 267 aa23.02■■□□□ 1.28
SMIM12-206ENST00000521580 SMARCA4P51532 1647 aa23.01■■□□□ 1.27
SMIM12-206ENST00000521580 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
SMIM12-206ENST00000521580 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
SMIM12-206ENST00000521580 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
SMIM12-206ENST00000521580 CCDC88BA6NC98 1476 aa22.77■■□□□ 1.23
SMIM12-206ENST00000521580 SMARCA2P51531 1590 aa22.7■■□□□ 1.23
SMIM12-206ENST00000521580 EHMT2Q96KQ7 1210 aa22.65■■□□□ 1.22
SMIM12-206ENST00000521580 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
SMIM12-206ENST00000521580 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.21
SMIM12-206ENST00000521580 ATAD2BQ9ULI0 1458 aa22.57■■□□□ 1.2
SMIM12-206ENST00000521580 PCGF6Q9BYE7 350 aa22.55■■□□□ 1.2
SMIM12-206ENST00000521580 ABCC8Q09428 1581 aa22.52■■□□□ 1.2
SMIM12-206ENST00000521580 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
SMIM12-206ENST00000521580 WRNQ14191 1432 aaPredicted RBP eCLIP22.27■■□□□ 1.16
SMIM12-206ENST00000521580 SOGA1O94964 1423 aa22.25■■□□□ 1.15
SMIM12-206ENST00000521580 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
SMIM12-206ENST00000521580 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
SMIM12-206ENST00000521580 HRCP23327 699 aa22.2■■□□□ 1.14
SMIM12-206ENST00000521580 HMGXB3Q12766 1538 aa22.16■■□□□ 1.14
SMIM12-206ENST00000521580 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
SMIM12-206ENST00000521580 RUSC2Q8N2Y8 1516 aa22.14■■□□□ 1.13
SMIM12-206ENST00000521580 EEA1Q15075 1411 aa22.12■■□□□ 1.13
SMIM12-206ENST00000521580 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
SMIM12-206ENST00000521580 UBTFP17480 764 aaKnown RBP22.06■■□□□ 1.12
SMIM12-206ENST00000521580 PPARGC1BQ86YN6 1023 aaKnown RBP22.02■■□□□ 1.12
SMIM12-206ENST00000521580 TNIKQ9UKE5 1360 aa21.96■■□□□ 1.11
SMIM12-206ENST00000521580 CEP162Q5TB80 1403 aa21.95■■□□□ 1.1
SMIM12-206ENST00000521580 GOLGA3Q08378 1498 aa21.93■■□□□ 1.1
SMIM12-206ENST00000521580 CFTRP13569 1480 aa21.9■■□□□ 1.1
SMIM12-206ENST00000521580 TOP2BQ02880 1626 aa21.89■■□□□ 1.09
SMIM12-206ENST00000521580 CC2D2AQ9P2K1 1620 aa21.88■■□□□ 1.09
SMIM12-206ENST00000521580 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
SMIM12-206ENST00000521580 BIVM-ERCC5R4GMW8 1640 aa21.8■■□□□ 1.08
SMIM12-206ENST00000521580 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
SMIM12-206ENST00000521580 CUX1P39880 1505 aa21.79■■□□□ 1.08
SMIM12-206ENST00000521580 CADPSQ9ULU8 1353 aa21.79■■□□□ 1.08
SMIM12-206ENST00000521580 KIF21BO75037 1637 aa21.76■■□□□ 1.07
SMIM12-206ENST00000521580 RAPGEF2Q9Y4G8 1499 aa21.73■■□□□ 1.07
SMIM12-206ENST00000521580 RANGAP1P46060 587 aaPredicted RBP21.73■■□□□ 1.07
SMIM12-206ENST00000521580 CLIP1P30622 1438 aa21.67■■□□□ 1.06
SMIM12-206ENST00000521580 KIF27Q86VH2 1401 aa21.65■■□□□ 1.06
SMIM12-206ENST00000521580 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
SMIM12-206ENST00000521580 ZEB1P37275 1124 aaPredicted RBP21.58■■□□□ 1.05
SMIM12-206ENST00000521580 PRXQ9BXM0 1461 aa21.58■■□□□ 1.04
SMIM12-206ENST00000521580 FANCD2Q9BXW9 1451 aa21.56■■□□□ 1.04
SMIM12-206ENST00000521580 CUX2O14529 1486 aa21.53■■□□□ 1.04
SMIM12-206ENST00000521580 ERICH3Q5RHP9 1530 aa21.52■■□□□ 1.04
SMIM12-206ENST00000521580 NESP48681 1621 aa21.51■■□□□ 1.03
SMIM12-206ENST00000521580 APLP2Q06481 763 aa21.51■■□□□ 1.03
SMIM12-206ENST00000521580 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
SMIM12-206ENST00000521580 VPS8Q8N3P4 1428 aa21.49■■□□□ 1.03
SMIM12-206ENST00000521580 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.45■■□□□ 1.02
SMIM12-206ENST00000521580 DNAJC5BQ9UF47 199 aa21.45■■□□□ 1.02
SMIM12-206ENST00000521580 IGF1RP08069 1367 aa21.43■■□□□ 1.02
SMIM12-206ENST00000521580 CCER1Q8TC90 406 aaPredicted RBP21.41■■□□□ 1.02
SMIM12-206ENST00000521580 CARMIL1Q5VZK9 1371 aa21.36■■□□□ 1.01
SMIM12-206ENST00000521580 DNMBPQ6XZF7 1577 aa21.35■■□□□ 1.01
SMIM12-206ENST00000521580 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
SMIM12-206ENST00000521580 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
SMIM12-206ENST00000521580 LAMC3Q9Y6N6 1575 aa21.33■■□□□ 1.01
SMIM12-206ENST00000521580 ARAP1Q96P48 1450 aa21.31■■□□□ 1
SMIM12-206ENST00000521580 POLA1P09884 1462 aaPredicted RBP21.31■■□□□ 1
SMIM12-206ENST00000521580 PDS5BQ9NTI5 1447 aa21.28■■□□□ 1
SMIM12-206ENST00000521580 HNRNPUL2Q1KMD3 747 aaKnown RBP21.26■□□□□ 0.99
SMIM12-206ENST00000521580 ABCA10Q8WWZ4 1543 aa21.24■□□□□ 0.99
SMIM12-206ENST00000521580 URB2Q14146 1524 aaKnown RBP21.23■□□□□ 0.99
SMIM12-206ENST00000521580 ARHGAP35Q9NRY4 1499 aa21.23■□□□□ 0.99
SMIM12-206ENST00000521580 KANK4Q5T7N3 995 aaPredicted RBP21.17■□□□□ 0.98
SMIM12-206ENST00000521580 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
SMIM12-206ENST00000521580 P3H3Q8IVL6 736 aa21.12■□□□□ 0.97
SMIM12-206ENST00000521580 KIF21AQ7Z4S6 1674 aa21.09■□□□□ 0.97
SMIM12-206ENST00000521580 ATP1B4Q9UN42 357 aaPredicted RBP21.04■□□□□ 0.96
SMIM12-206ENST00000521580 GAPVD1Q14C86 1478 aa21.04■□□□□ 0.96
SMIM12-206ENST00000521580 CUL7Q14999 1698 aa21.02■□□□□ 0.96
SMIM12-206ENST00000521580 WDR97A6NE52 1622 aa21■□□□□ 0.95
SMIM12-206ENST00000521580 FHAD1B1AJZ9 1412 aa20.97■□□□□ 0.95
SMIM12-206ENST00000521580 FHOD3Q2V2M9 1422 aa20.97■□□□□ 0.95
SMIM12-206ENST00000521580 ABCA5Q8WWZ7 1642 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 151.7 ms