RNA–Protein interactions for RNA: ENST00000519386.5

MRPS28-205, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 2

Gene MRPS28, Length 555 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-205ENST00000519386 AEBP2Q6ZN18 517 aaPredicted RBP19.87■□□□□ 0.77
MRPS28-205ENST00000519386 CHIC1Q5VXU3 224 aa19.16■□□□□ 0.66
MRPS28-205ENST00000519386 SENP3Q9H4L4 574 aaPredicted RBP16.87■□□□□ 0.29
MRPS28-205ENST00000519386 PHF23Q9BUL5 403 aaPredicted RBP16.84■□□□□ 0.29
MRPS28-205ENST00000519386 NISCHQ9Y2I1 1504 aa16.82■□□□□ 0.28
MRPS28-205ENST00000519386 FOXD1Q16676 465 aa15.7■□□□□ 0.1
MRPS28-205ENST00000519386 PLPPR3Q6T4P5 718 aa15.43■□□□□ 0.06
MRPS28-205ENST00000519386 PPP6R1Q9UPN7 881 aa14.93□□□□□ -0.02
MRPS28-205ENST00000519386 CCDC180Q9P1Z9 1646 aa14.91□□□□□ -0.02
MRPS28-205ENST00000519386 ADRA2BP18089 450 aa14.88□□□□□ -0.03
MRPS28-205ENST00000519386 PIAS4Q8N2W9 510 aaPredicted RBP14.72□□□□□ -0.05
MRPS28-205ENST00000519386 MSH5O43196 834 aa14.55□□□□□ -0.08
MRPS28-205ENST00000519386 ABCC9O60706 1549 aa14.51□□□□□ -0.09
MRPS28-205ENST00000519386 ZCCHC6Q5VYS8 1495 aaKnown RBP14.04□□□□□ -0.16
MRPS28-205ENST00000519386 DCAF8L2P0C7V8 631 aa14.02□□□□□ -0.17
MRPS28-205ENST00000519386 NACADO15069 1562 aa13.98□□□□□ -0.17
MRPS28-205ENST00000519386 RB1CC1Q8TDY2 1594 aa13.97□□□□□ -0.17
MRPS28-205ENST00000519386 MYO15BQ96JP2 1530 aa13.92□□□□□ -0.18
MRPS28-205ENST00000519386 DCAF1Q9Y4B6 1507 aa13.91□□□□□ -0.18
MRPS28-205ENST00000519386 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
MRPS28-205ENST00000519386 POTEDQ86YR6 584 aa13.68□□□□□ -0.22
MRPS28-205ENST00000519386 SCRIBQ14160 1630 aa13.64□□□□□ -0.23
MRPS28-205ENST00000519386 SCAF1Q9H7N4 1312 aaKnown RBP13.59□□□□□ -0.23
MRPS28-205ENST00000519386 MAPK8IP2Q13387 824 aaPredicted RBP13.57□□□□□ -0.24
MRPS28-205ENST00000519386 PPP4R3CPQ6ZMV5 832 aa13.57□□□□□ -0.24
MRPS28-205ENST00000519386 PABPN1Q86U42 306 aaKnown RBP eCLIP13.57□□□□□ -0.24
MRPS28-205ENST00000519386 BICRAQ9NZM4 1560 aa13.57□□□□□ -0.24
MRPS28-205ENST00000519386 DMRT2Q9Y5R5 561 aa13.44□□□□□ -0.26
MRPS28-205ENST00000519386 SHROOM4Q9ULL8 1493 aa13.4□□□□□ -0.26
MRPS28-205ENST00000519386 CNKSR2Q8WXI2 1034 aa13.24□□□□□ -0.29
MRPS28-205ENST00000519386 DNAJC5BQ9UF47 199 aa13.22□□□□□ -0.29
MRPS28-205ENST00000519386 EIF4G1Q04637 1599 aaKnown RBP13.2□□□□□ -0.3
MRPS28-205ENST00000519386 NCBP3Q53F19 620 aaKnown RBP13.12□□□□□ -0.31
MRPS28-205ENST00000519386 CC2D2AQ9P2K1 1620 aa13.12□□□□□ -0.31
MRPS28-205ENST00000519386 CECR2Q9BXF3 1484 aa13.11□□□□□ -0.31
MRPS28-205ENST00000519386 HOXD11P31277 338 aaPredicted RBP13.08□□□□□ -0.32
MRPS28-205ENST00000519386 RNF216Q9NWF9 866 aaPredicted RBP13.05□□□□□ -0.32
MRPS28-205ENST00000519386 SMARCA4P51532 1647 aa13.05□□□□□ -0.32
MRPS28-205ENST00000519386 BAZ1AQ9NRL2 1556 aaPredicted RBP13.03□□□□□ -0.32
MRPS28-205ENST00000519386 KCNA4P22459 653 aa13□□□□□ -0.33
MRPS28-205ENST00000519386 MROH2BQ7Z745 1585 aa12.98□□□□□ -0.33
MRPS28-205ENST00000519386 NPM3O75607 178 aaKnown RBP12.97□□□□□ -0.33
MRPS28-205ENST00000519386 ATAD2BQ9ULI0 1458 aa12.93□□□□□ -0.34
MRPS28-205ENST00000519386 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
MRPS28-205ENST00000519386 NCAPD3P42695 1498 aa12.9□□□□□ -0.34
MRPS28-205ENST00000519386 PEG3Q9GZU2 1588 aa12.9□□□□□ -0.35
MRPS28-205ENST00000519386 RSF1Q96T23 1441 aaPredicted RBP12.87□□□□□ -0.35
MRPS28-205ENST00000519386 HMGXB3Q12766 1538 aa12.86□□□□□ -0.35
MRPS28-205ENST00000519386 WIZO95785 1651 aa12.86□□□□□ -0.35
MRPS28-205ENST00000519386 BAZ1BQ9UIG0 1483 aaKnown RBP12.84□□□□□ -0.35
MRPS28-205ENST00000519386 DCAF8L1A6NGE4 600 aa12.8□□□□□ -0.36
MRPS28-205ENST00000519386 TOP2AP11388 1531 aaKnown RBP12.71□□□□□ -0.38
MRPS28-205ENST00000519386 SUPT5HO00267 1087 aaKnown RBP12.63□□□□□ -0.39
MRPS28-205ENST00000519386 NESP48681 1621 aa12.59□□□□□ -0.39
MRPS28-205ENST00000519386 CCDC88BA6NC98 1476 aa12.56□□□□□ -0.4
MRPS28-205ENST00000519386 LAMC3Q9Y6N6 1575 aa12.55□□□□□ -0.4
MRPS28-205ENST00000519386 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
MRPS28-205ENST00000519386 CFTRP13569 1480 aa12.48□□□□□ -0.41
MRPS28-205ENST00000519386 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
MRPS28-205ENST00000519386 RNF39Q9H2S5 420 aa12.47□□□□□ -0.41
MRPS28-205ENST00000519386 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
MRPS28-205ENST00000519386 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
MRPS28-205ENST00000519386 PRDM2Q13029 1718 aa12.42□□□□□ -0.42
MRPS28-205ENST00000519386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.41□□□□□ -0.421e-8■■■□□ 15.2
MRPS28-205ENST00000519386 FANCD2Q9BXW9 1451 aa12.4□□□□□ -0.42
MRPS28-205ENST00000519386 CEP164Q9UPV0 1460 aa12.37□□□□□ -0.43
MRPS28-205ENST00000519386 THOC2Q8NI27 1593 aaKnown RBP12.37□□□□□ -0.43
MRPS28-205ENST00000519386 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
MRPS28-205ENST00000519386 SLC4A2P04920 1241 aa12.32□□□□□ -0.44
MRPS28-205ENST00000519386 SLC4A1APQ9BWU0 796 aaKnown RBP12.31□□□□□ -0.44
MRPS28-205ENST00000519386 CUX2O14529 1486 aa12.3□□□□□ -0.44
MRPS28-205ENST00000519386 C1QBPQ07021 282 aaKnown RBP12.3□□□□□ -0.44
MRPS28-205ENST00000519386 WDR62O43379 1518 aa12.29□□□□□ -0.44
MRPS28-205ENST00000519386 URB2Q14146 1524 aaKnown RBP12.28□□□□□ -0.44
MRPS28-205ENST00000519386 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
MRPS28-205ENST00000519386 U3KPZ7 1027 aaPredicted RBP12.23□□□□□ -0.45
MRPS28-205ENST00000519386 TOPBP1Q92547 1522 aa12.22□□□□□ -0.45
MRPS28-205ENST00000519386 DNMBPQ6XZF7 1577 aa12.22□□□□□ -0.45
MRPS28-205ENST00000519386 ABCC8Q09428 1581 aa12.19□□□□□ -0.46
MRPS28-205ENST00000519386 CUX1P39880 1505 aa12.18□□□□□ -0.46
MRPS28-205ENST00000519386 WRNQ14191 1432 aaPredicted RBP eCLIP12.12□□□□□ -0.47
MRPS28-205ENST00000519386 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
MRPS28-205ENST00000519386 SYNJ1O43426 1573 aa12.11□□□□□ -0.47
MRPS28-205ENST00000519386 FGD5Q6ZNL6 1462 aa12.11□□□□□ -0.47
MRPS28-205ENST00000519386 IFT140Q96RY7 1462 aa12.1□□□□□ -0.47
MRPS28-205ENST00000519386 TOP2BQ02880 1626 aa12.09□□□□□ -0.47
MRPS28-205ENST00000519386 BIVM-ERCC5R4GMW8 1640 aa12.09□□□□□ -0.47
MRPS28-205ENST00000519386 RAD54L2Q9Y4B4 1467 aa12.08□□□□□ -0.48
MRPS28-205ENST00000519386 TARBP1Q13395 1621 aaKnown RBP12.08□□□□□ -0.48
MRPS28-205ENST00000519386 SOGA1O94964 1423 aa12.06□□□□□ -0.48
MRPS28-205ENST00000519386 ZNF608Q9ULD9 1512 aaPredicted RBP12.06□□□□□ -0.48
MRPS28-205ENST00000519386 FOXD4L1Q9NU39 408 aa12.02□□□□□ -0.49
MRPS28-205ENST00000519386 EIF4G3O43432 1585 aaKnown RBP12.01□□□□□ -0.49
MRPS28-205ENST00000519386 WDR97A6NE52 1622 aa12.01□□□□□ -0.49
MRPS28-205ENST00000519386 TDRD9Q8NDG6 1382 aaKnown RBP12□□□□□ -0.49
MRPS28-205ENST00000519386 AQRO60306 1485 aaKnown RBP eCLIP12□□□□□ -0.49
MRPS28-205ENST00000519386 ABCA10Q8WWZ4 1543 aa11.99□□□□□ -0.49
MRPS28-205ENST00000519386 ZBTB22O15209 634 aa11.98□□□□□ -0.49
MRPS28-205ENST00000519386 MYCNP04198 464 aaPredicted RBP11.97□□□□□ -0.49
MRPS28-205ENST00000519386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms