RNA–Protein interactions for RNA: ENST00000516080.1

RNU4-49P-201, Transcript of RNA, U4 small nuclear 49, pseudogene, humanhuman

BASIC

Gene RNU4-49P, Length 140 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-49P-201ENST00000516080 AEBP2Q6ZN18 517 aaPredicted RBP20.02■□□□□ 0.8
RNU4-49P-201ENST00000516080 CHIC1Q5VXU3 224 aa19.27■□□□□ 0.68
RNU4-49P-201ENST00000516080 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
RNU4-49P-201ENST00000516080 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
RNU4-49P-201ENST00000516080 FOXD1Q16676 465 aa15.87■□□□□ 0.13
RNU4-49P-201ENST00000516080 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
RNU4-49P-201ENST00000516080 PPP6R1Q9UPN7 881 aa14.99□□□□□ -0.01
RNU4-49P-201ENST00000516080 ADRA2BP18089 450 aa14.97□□□□□ -0.01
RNU4-49P-201ENST00000516080 PIAS4Q8N2W9 510 aaPredicted RBP14.91□□□□□ -0.02
RNU4-49P-201ENST00000516080 MSH5O43196 834 aa14.84□□□□□ -0.03
RNU4-49P-201ENST00000516080 POTEDQ86YR6 584 aa14.04□□□□□ -0.16
RNU4-49P-201ENST00000516080 SCAF1Q9H7N4 1312 aaKnown RBP13.8□□□□□ -0.2
RNU4-49P-201ENST00000516080 MAPK8IP2Q13387 824 aaPredicted RBP13.67□□□□□ -0.22
RNU4-49P-201ENST00000516080 PPP4R3CPQ6ZMV5 832 aa13.61□□□□□ -0.23
RNU4-49P-201ENST00000516080 DMRT2Q9Y5R5 561 aa13.59□□□□□ -0.23
RNU4-49P-201ENST00000516080 CNKSR2Q8WXI2 1034 aa13.33□□□□□ -0.28
RNU4-49P-201ENST00000516080 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
RNU4-49P-201ENST00000516080 HOXD11P31277 338 aaPredicted RBP13.18□□□□□ -0.3
RNU4-49P-201ENST00000516080 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
RNU4-49P-201ENST00000516080 DCAF8L1A6NGE4 600 aa13.02□□□□□ -0.33
RNU4-49P-201ENST00000516080 NPM3O75607 178 aaKnown RBP12.95□□□□□ -0.34
RNU4-49P-201ENST00000516080 KCNA4P22459 653 aa12.89□□□□□ -0.35
RNU4-49P-201ENST00000516080 DNAJC5BQ9UF47 199 aa12.74□□□□□ -0.37
RNU4-49P-201ENST00000516080 RNF39Q9H2S5 420 aa12.65□□□□□ -0.38
RNU4-49P-201ENST00000516080 CACNB1Q02641 598 aaPredicted RBP12.58□□□□□ -0.4
RNU4-49P-201ENST00000516080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.58□□□□□ -0.4
RNU4-49P-201ENST00000516080 C1QBPQ07021 282 aaKnown RBP12.51□□□□□ -0.41
RNU4-49P-201ENST00000516080 SLC4A2P04920 1241 aa12.3□□□□□ -0.44
RNU4-49P-201ENST00000516080 U3KPZ7 1027 aaPredicted RBP12.3□□□□□ -0.44
RNU4-49P-201ENST00000516080 SLC4A1APQ9BWU0 796 aaKnown RBP12.25□□□□□ -0.45
RNU4-49P-201ENST00000516080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.11□□□□□ -0.47
RNU4-49P-201ENST00000516080 HNRNPUL2Q1KMD3 747 aaKnown RBP12.11□□□□□ -0.47
RNU4-49P-201ENST00000516080 APLP2Q06481 763 aa12.08□□□□□ -0.48
RNU4-49P-201ENST00000516080 CAPN15O75808 1086 aa12.05□□□□□ -0.48
RNU4-49P-201ENST00000516080 SAMD1Q6SPF0 538 aaPredicted RBP12.04□□□□□ -0.48
RNU4-49P-201ENST00000516080 SPINK5Q9NQ38 1064 aaPredicted RBP12.04□□□□□ -0.48
RNU4-49P-201ENST00000516080 MYCNP04198 464 aaPredicted RBP12.01□□□□□ -0.49
RNU4-49P-201ENST00000516080 FOXD4L1Q9NU39 408 aa12□□□□□ -0.49
RNU4-49P-201ENST00000516080 ZNF219Q9P2Y4 722 aaPredicted RBP11.93□□□□□ -0.5
RNU4-49P-201ENST00000516080 DSG3P32926 999 aa11.91□□□□□ -0.5
RNU4-49P-201ENST00000516080 TRHP20396 242 aaPredicted RBP11.9□□□□□ -0.5
RNU4-49P-201ENST00000516080 ZBTB22O15209 634 aa11.83□□□□□ -0.52
RNU4-49P-201ENST00000516080 ABCB7O75027 752 aa11.75□□□□□ -0.53
RNU4-49P-201ENST00000516080 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
RNU4-49P-201ENST00000516080 ATF5Q9Y2D1 282 aaPredicted RBP11.65□□□□□ -0.54
RNU4-49P-201ENST00000516080 POLA2Q14181 598 aa11.63□□□□□ -0.55
RNU4-49P-201ENST00000516080 CSRNP3Q8WYN3 585 aa11.51□□□□□ -0.57
RNU4-49P-201ENST00000516080 EHMT2Q96KQ7 1210 aa11.48□□□□□ -0.57
RNU4-49P-201ENST00000516080 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
RNU4-49P-201ENST00000516080 RBM42Q9BTD8 480 aaKnown RBP11.42□□□□□ -0.58
RNU4-49P-201ENST00000516080 FBLN2P98095 1184 aa11.28□□□□□ -0.6
RNU4-49P-201ENST00000516080 OSCARQ8IYS5 282 aa11.23□□□□□ -0.61
RNU4-49P-201ENST00000516080 AKT1S1Q96B36 256 aa11.19□□□□□ -0.62
RNU4-49P-201ENST00000516080 MKRN4PQ13434 485 aaPredicted RBP11.14□□□□□ -0.63
RNU4-49P-201ENST00000516080 SPDYE2BA6NHP3 402 aa11.11□□□□□ -0.63
RNU4-49P-201ENST00000516080 SPDYE6P0CI01 402 aa11.11□□□□□ -0.63
RNU4-49P-201ENST00000516080 SPDYE2Q495Y8 402 aa11.11□□□□□ -0.63
RNU4-49P-201ENST00000516080 POTEHQ6S545 545 aa11.06□□□□□ -0.64
RNU4-49P-201ENST00000516080 REM2Q8IYK8 340 aaPredicted RBP11.05□□□□□ -0.64
RNU4-49P-201ENST00000516080 CHRDL2Q6WN34 429 aa11.04□□□□□ -0.64
RNU4-49P-201ENST00000516080 ZNF692Q9BU19 519 aaPredicted RBP11.01□□□□□ -0.65
RNU4-49P-201ENST00000516080 SSUH2Q9Y2M2 353 aa10.96□□□□□ -0.65
RNU4-49P-201ENST00000516080 PITPNM1O00562 1244 aa10.92□□□□□ -0.66
RNU4-49P-201ENST00000516080 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
RNU4-49P-201ENST00000516080 PABPN1Q86U42 306 aaKnown RBP eCLIP10.83□□□□□ -0.68
RNU4-49P-201ENST00000516080 PIP4P2Q8N4L2 257 aa10.81□□□□□ -0.68
RNU4-49P-201ENST00000516080 CLEC11AQ9Y240 323 aa10.8□□□□□ -0.68
RNU4-49P-201ENST00000516080 FXR2P51116 673 aaKnown RBP eCLIP10.79□□□□□ -0.68
RNU4-49P-201ENST00000516080 SPDYE4A6NLX3 237 aa10.77□□□□□ -0.69
RNU4-49P-201ENST00000516080 PRR29P0C7W0 189 aa10.68□□□□□ -0.7
RNU4-49P-201ENST00000516080 PRKAR2AP13861 404 aaKnown RBP10.65□□□□□ -0.7
RNU4-49P-201ENST00000516080 STAG3Q9UJ98 1225 aa10.64□□□□□ -0.71
RNU4-49P-201ENST00000516080 HAX1O00165 279 aa10.58□□□□□ -0.72
RNU4-49P-201ENST00000516080 CHADLQ6NUI6 762 aa10.54□□□□□ -0.72
RNU4-49P-201ENST00000516080 PROM2Q8N271 834 aa10.54□□□□□ -0.72
RNU4-49P-201ENST00000516080 SP7Q8TDD2 431 aaPredicted RBP10.49□□□□□ -0.73
RNU4-49P-201ENST00000516080 FARP1Q9Y4F1 1045 aaPredicted RBP10.46□□□□□ -0.73
RNU4-49P-201ENST00000516080 C19orf67A6NJJ6 358 aa10.44□□□□□ -0.74
RNU4-49P-201ENST00000516080 FKBP8Q14318 412 aa10.44□□□□□ -0.74
RNU4-49P-201ENST00000516080 CREBZFQ9NS37 354 aa10.43□□□□□ -0.74
RNU4-49P-201ENST00000516080 EVX2Q03828 476 aa10.4□□□□□ -0.74
RNU4-49P-201ENST00000516080 CD44P16070 742 aaKnown RBP10.33□□□□□ -0.76
RNU4-49P-201ENST00000516080 NPM1P06748 294 aaKnown RBP eCLIP10.32□□□□□ -0.76
RNU4-49P-201ENST00000516080 PLEKHG5O94827 1062 aa10.29□□□□□ -0.76
RNU4-49P-201ENST00000516080 MNX1P50219 401 aaPredicted RBP10.27□□□□□ -0.77
RNU4-49P-201ENST00000516080 MIER1Q8N108 512 aa10.26□□□□□ -0.77
RNU4-49P-201ENST00000516080 PAK3O75914 559 aaPredicted RBP10.23□□□□□ -0.77
RNU4-49P-201ENST00000516080 CLCN6P51797 869 aa10.23□□□□□ -0.77
RNU4-49P-201ENST00000516080 FBXO3Q9UK99 471 aa10.23□□□□□ -0.77
RNU4-49P-201ENST00000516080 GABBR2O75899 941 aa10.22□□□□□ -0.77
RNU4-49P-201ENST00000516080 ZRANB1Q9UGI0 708 aa10.22□□□□□ -0.77
RNU4-49P-201ENST00000516080 PLCD3Q8N3E9 789 aa10.21□□□□□ -0.77
RNU4-49P-201ENST00000516080 ZNF579Q8NAF0 562 aaKnown RBP10.19□□□□□ -0.78
RNU4-49P-201ENST00000516080 ZBTB47Q9UFB7 747 aaPredicted RBP10.17□□□□□ -0.78
RNU4-49P-201ENST00000516080 TSPYL2Q9H2G4 693 aaPredicted RBP10.08□□□□□ -0.8
RNU4-49P-201ENST00000516080 PHF12Q96QT6 1004 aa10.07□□□□□ -0.8
RNU4-49P-201ENST00000516080 VASPP50552 380 aaPredicted RBP10.05□□□□□ -0.8
RNU4-49P-201ENST00000516080 RASEFQ8IZ41 740 aa10.03□□□□□ -0.8
RNU4-49P-201ENST00000516080 DCBLD2Q96PD2 775 aa10.02□□□□□ -0.81
RNU4-49P-201ENST00000516080 CCDC61Q9Y6R9 512 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms