RNA–Protein interactions for RNA: ENST00000515594.5

PHF3-212, Transcript of PHD finger protein 3, humanhuman

TSL 2

Gene PHF3, Length 3,074 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-212ENST00000515594 NISCHQ9Y2I1 1504 aa25.87■■□□□ 1.73
PHF3-212ENST00000515594 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
PHF3-212ENST00000515594 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
PHF3-212ENST00000515594 DCAF8L2P0C7V8 631 aa21.99■■□□□ 1.11
PHF3-212ENST00000515594 ZCCHC6Q5VYS8 1495 aaKnown RBP21.9■■□□□ 1.1
PHF3-212ENST00000515594 MYO15BQ96JP2 1530 aa21.87■■□□□ 1.09
PHF3-212ENST00000515594 CHIC1Q5VXU3 224 aa21.75■■□□□ 1.07
PHF3-212ENST00000515594 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
PHF3-212ENST00000515594 PCGF6Q9BYE7 350 aa21.56■■□□□ 1.04
PHF3-212ENST00000515594 HRCP23327 699 aa21.51■■□□□ 1.03
PHF3-212ENST00000515594 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
PHF3-212ENST00000515594 LOC105371045A0A1W2PR82 267 aa21.38■■□□□ 1.01
PHF3-212ENST00000515594 EHMT2Q96KQ7 1210 aa20.95■□□□□ 0.94
PHF3-212ENST00000515594 DCAF1Q9Y4B6 1507 aa20.93■□□□□ 0.94
PHF3-212ENST00000515594 FAM9AQ8IZU1 332 aaPredicted RBP20.88■□□□□ 0.93
PHF3-212ENST00000515594 SCRIBQ14160 1630 aa20.78■□□□□ 0.92
PHF3-212ENST00000515594 TRIM26Q12899 539 aaPredicted RBP20.78■□□□□ 0.92
PHF3-212ENST00000515594 ABCC9O60706 1549 aa20.73■□□□□ 0.91
PHF3-212ENST00000515594 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
PHF3-212ENST00000515594 RSF1Q96T23 1441 aaPredicted RBP20.69■□□□□ 0.9
PHF3-212ENST00000515594 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
PHF3-212ENST00000515594 CECR2Q9BXF3 1484 aa20.43■□□□□ 0.86
PHF3-212ENST00000515594 MROH2BQ7Z745 1585 aa20.3■□□□□ 0.84
PHF3-212ENST00000515594 TTBK1Q5TCY1 1321 aaPredicted RBP20.29■□□□□ 0.84
PHF3-212ENST00000515594 ZEB1P37275 1124 aaPredicted RBP20.24■□□□□ 0.83
PHF3-212ENST00000515594 WIZO95785 1651 aa20.23■□□□□ 0.83
PHF3-212ENST00000515594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.22■□□□□ 0.83
PHF3-212ENST00000515594 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
PHF3-212ENST00000515594 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
PHF3-212ENST00000515594 NACADO15069 1562 aa19.99■□□□□ 0.79
PHF3-212ENST00000515594 ABCC8Q09428 1581 aa19.99■□□□□ 0.79
PHF3-212ENST00000515594 CCDC88BA6NC98 1476 aa19.91■□□□□ 0.78
PHF3-212ENST00000515594 BAZ1AQ9NRL2 1556 aaPredicted RBP19.9■□□□□ 0.78
PHF3-212ENST00000515594 EIF4G1Q04637 1599 aaKnown RBP19.87■□□□□ 0.77
PHF3-212ENST00000515594 SOGA1O94964 1423 aa19.83■□□□□ 0.77
PHF3-212ENST00000515594 NEUROD1Q13562 356 aa19.83■□□□□ 0.77
PHF3-212ENST00000515594 RUSC2Q8N2Y8 1516 aa19.78■□□□□ 0.76
PHF3-212ENST00000515594 CEP162Q5TB80 1403 aa19.76■□□□□ 0.75
PHF3-212ENST00000515594 UBTFP17480 764 aaKnown RBP19.76■□□□□ 0.75
PHF3-212ENST00000515594 DIEXFQ68CQ4 756 aaKnown RBP19.75■□□□□ 0.75
PHF3-212ENST00000515594 ACIN1Q9UKV3 1341 aaKnown RBP19.72■□□□□ 0.75
PHF3-212ENST00000515594 PABPN1Q86U42 306 aaKnown RBP eCLIP19.69■□□□□ 0.74
PHF3-212ENST00000515594 TOP2AP11388 1531 aaKnown RBP19.69■□□□□ 0.74
PHF3-212ENST00000515594 SMARCA2P51531 1590 aa19.68■□□□□ 0.74
PHF3-212ENST00000515594 SMARCA4P51532 1647 aa19.66■□□□□ 0.74
PHF3-212ENST00000515594 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
PHF3-212ENST00000515594 GTF3C3Q9Y5Q9 886 aa19.65■□□□□ 0.74
PHF3-212ENST00000515594 CSRNP3Q8WYN3 585 aa19.62■□□□□ 0.73
PHF3-212ENST00000515594 HNRNPUL2Q1KMD3 747 aaKnown RBP19.6■□□□□ 0.73
PHF3-212ENST00000515594 YTHDC1Q96MU7 727 aaKnown RBP19.6■□□□□ 0.73
PHF3-212ENST00000515594 UNC13AQ9UPW8 1703 aa19.58■□□□□ 0.73
PHF3-212ENST00000515594 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.73
PHF3-212ENST00000515594 TNIKQ9UKE5 1360 aa19.56■□□□□ 0.72
PHF3-212ENST00000515594 PELP1Q8IZL8 1130 aaKnown RBP19.55■□□□□ 0.72
PHF3-212ENST00000515594 CENPBP07199 599 aaPredicted RBP19.45■□□□□ 0.7
PHF3-212ENST00000515594 ZNF316A6NFI3 1004 aaPredicted RBP19.44■□□□□ 0.7
PHF3-212ENST00000515594 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
PHF3-212ENST00000515594 MIER1Q8N108 512 aa19.38■□□□□ 0.69
PHF3-212ENST00000515594 SYNJ1O43426 1573 aa19.37■□□□□ 0.69
PHF3-212ENST00000515594 EEA1Q15075 1411 aa19.34■□□□□ 0.69
PHF3-212ENST00000515594 CLIP1P30622 1438 aa19.32■□□□□ 0.68
PHF3-212ENST00000515594 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
PHF3-212ENST00000515594 RAPGEF2Q9Y4G8 1499 aa19.28■□□□□ 0.68
PHF3-212ENST00000515594 CEP164Q9UPV0 1460 aa19.25■□□□□ 0.67
PHF3-212ENST00000515594 APLP2Q06481 763 aa19.23■□□□□ 0.67
PHF3-212ENST00000515594 VPS8Q8N3P4 1428 aa19.19■□□□□ 0.66
PHF3-212ENST00000515594 KIF21BO75037 1637 aa19.16■□□□□ 0.66
PHF3-212ENST00000515594 ATAD2BQ9ULI0 1458 aa19.12■□□□□ 0.65
PHF3-212ENST00000515594 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
PHF3-212ENST00000515594 KANK4Q5T7N3 995 aaPredicted RBP19.11■□□□□ 0.65
PHF3-212ENST00000515594 ITGAEP38570 1179 aa19.07■□□□□ 0.64
PHF3-212ENST00000515594 PEG3Q9GZU2 1588 aa19.06■□□□□ 0.64
PHF3-212ENST00000515594 DHX57Q6P158 1386 aaKnown RBP18.99■□□□□ 0.63
PHF3-212ENST00000515594 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
PHF3-212ENST00000515594 TOP2BQ02880 1626 aa18.94■□□□□ 0.62
PHF3-212ENST00000515594 KCNH8Q96L42 1107 aa18.88■□□□□ 0.61
PHF3-212ENST00000515594 PRXQ9BXM0 1461 aa18.86■□□□□ 0.61
PHF3-212ENST00000515594 CUX1P39880 1505 aa18.83■□□□□ 0.61
PHF3-212ENST00000515594 BIVM-ERCC5R4GMW8 1640 aa18.81■□□□□ 0.6
PHF3-212ENST00000515594 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
PHF3-212ENST00000515594 ERICH3Q5RHP9 1530 aa18.76■□□□□ 0.59
PHF3-212ENST00000515594 ARHGAP35Q9NRY4 1499 aa18.76■□□□□ 0.59
PHF3-212ENST00000515594 P3H3Q8IVL6 736 aa18.75■□□□□ 0.59
PHF3-212ENST00000515594 CCNB3Q8WWL7 1395 aa18.75■□□□□ 0.59
PHF3-212ENST00000515594 HIRIP3Q9BW71 556 aaPredicted RBP18.73■□□□□ 0.59
PHF3-212ENST00000515594 KIF27Q86VH2 1401 aa18.73■□□□□ 0.59
PHF3-212ENST00000515594 RRBP1Q9P2E9 1410 aaKnown RBP18.73■□□□□ 0.59
PHF3-212ENST00000515594 ATP1B4Q9UN42 357 aaPredicted RBP18.72■□□□□ 0.59
PHF3-212ENST00000515594 SIN3AQ96ST3 1273 aa18.7■□□□□ 0.58
PHF3-212ENST00000515594 CLSPNQ9HAW4 1339 aa18.7■□□□□ 0.58
PHF3-212ENST00000515594 RAB3GAP2Q9H2M9 1393 aa18.69■□□□□ 0.58
PHF3-212ENST00000515594 BCANQ96GW7 911 aa18.69■□□□□ 0.58
PHF3-212ENST00000515594 FAM50AQ14320 339 aaKnown RBP18.67■□□□□ 0.58
PHF3-212ENST00000515594 DDX10Q13206 875 aaKnown RBP18.64■□□□□ 0.57
PHF3-212ENST00000515594 CUX2O14529 1486 aa18.63■□□□□ 0.57
PHF3-212ENST00000515594 MAPKBP1O60336 1514 aa18.62■□□□□ 0.57
PHF3-212ENST00000515594 PHLDB1Q86UU1 1377 aa18.59■□□□□ 0.57
PHF3-212ENST00000515594 IGF1RP08069 1367 aa18.58■□□□□ 0.57
PHF3-212ENST00000515594 NCAPD3P42695 1498 aa18.58■□□□□ 0.56
PHF3-212ENST00000515594 CFTRP13569 1480 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms