RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 AEBP2Q6ZN18 517 aaPredicted RBP28.11■■■□□ 2.09
NUP54-218ENST00000515460 CHIC1Q5VXU3 224 aa26.83■■□□□ 1.89
NUP54-218ENST00000515460 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
NUP54-218ENST00000515460 PHF23Q9BUL5 403 aaPredicted RBP23.68■■□□□ 1.38
NUP54-218ENST00000515460 FOXD1Q16676 465 aa22.31■■□□□ 1.16
NUP54-218ENST00000515460 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
NUP54-218ENST00000515460 PPP6R1Q9UPN7 881 aa21.02■□□□□ 0.96
NUP54-218ENST00000515460 ADRA2BP18089 450 aa20.99■□□□□ 0.95
NUP54-218ENST00000515460 PIAS4Q8N2W9 510 aaPredicted RBP20.92■□□□□ 0.94
NUP54-218ENST00000515460 MSH5O43196 834 aa20.77■□□□□ 0.92
NUP54-218ENST00000515460 POTEDQ86YR6 584 aa20.01■□□□□ 0.79
NUP54-218ENST00000515460 MAPK8IP2Q13387 824 aaPredicted RBP19.24■□□□□ 0.67
NUP54-218ENST00000515460 SCAF1Q9H7N4 1312 aaKnown RBP19.16■□□□□ 0.66
NUP54-218ENST00000515460 DMRT2Q9Y5R5 561 aa18.99■□□□□ 0.63
NUP54-218ENST00000515460 PPP4R3CPQ6ZMV5 832 aa18.93■□□□□ 0.62
NUP54-218ENST00000515460 CNKSR2Q8WXI2 1034 aa18.5■□□□□ 0.55
NUP54-218ENST00000515460 DCAF8L1A6NGE4 600 aa18.35■□□□□ 0.53
NUP54-218ENST00000515460 HOXD11P31277 338 aaPredicted RBP18.34■□□□□ 0.53
NUP54-218ENST00000515460 RNF216Q9NWF9 866 aaPredicted RBP18.27■□□□□ 0.52
NUP54-218ENST00000515460 NCBP3Q53F19 620 aaKnown RBP18.24■□□□□ 0.51
NUP54-218ENST00000515460 NPM3O75607 178 aaKnown RBP17.97■□□□□ 0.47
NUP54-218ENST00000515460 KCNA4P22459 653 aa17.83■□□□□ 0.44
NUP54-218ENST00000515460 CACNB1Q02641 598 aaPredicted RBP17.79■□□□□ 0.44
NUP54-218ENST00000515460 RNF39Q9H2S5 420 aa17.74■□□□□ 0.43
NUP54-218ENST00000515460 DNAJC5BQ9UF47 199 aa17.6■□□□□ 0.41
NUP54-218ENST00000515460 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.58■□□□□ 0.4
NUP54-218ENST00000515460 C1QBPQ07021 282 aaKnown RBP17.49■□□□□ 0.39
NUP54-218ENST00000515460 U3KPZ7 1027 aaPredicted RBP17.18■□□□□ 0.34
NUP54-218ENST00000515460 SLC4A2P04920 1241 aa17.12■□□□□ 0.33
NUP54-218ENST00000515460 SPINK5Q9NQ38 1064 aaPredicted RBP16.92■□□□□ 0.3
NUP54-218ENST00000515460 CAPN15O75808 1086 aa16.91■□□□□ 0.3
NUP54-218ENST00000515460 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
NUP54-218ENST00000515460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.73■□□□□ 0.27
NUP54-218ENST00000515460 HNRNPUL2Q1KMD3 747 aaKnown RBP16.73■□□□□ 0.27
NUP54-218ENST00000515460 DSG3P32926 999 aa16.7■□□□□ 0.26
NUP54-218ENST00000515460 TRHP20396 242 aaPredicted RBP16.69■□□□□ 0.26
NUP54-218ENST00000515460 APLP2Q06481 763 aa16.68■□□□□ 0.26
NUP54-218ENST00000515460 SAMD1Q6SPF0 538 aaPredicted RBP16.65■□□□□ 0.26
NUP54-218ENST00000515460 MYCNP04198 464 aaPredicted RBP16.6■□□□□ 0.25
NUP54-218ENST00000515460 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
NUP54-218ENST00000515460 ABCB7O75027 752 aa16.54■□□□□ 0.24
NUP54-218ENST00000515460 FOXD4L1Q9NU39 408 aa16.53■□□□□ 0.24
NUP54-218ENST00000515460 ZBTB22O15209 634 aa16.38■□□□□ 0.21
NUP54-218ENST00000515460 POLA2Q14181 598 aa16.26■□□□□ 0.19
NUP54-218ENST00000515460 ATF5Q9Y2D1 282 aaPredicted RBP16.26■□□□□ 0.19
NUP54-218ENST00000515460 ATXN8OSP0DMR3 200 aa15.96■□□□□ 0.15
NUP54-218ENST00000515460 RBM42Q9BTD8 480 aaKnown RBP15.9■□□□□ 0.14
NUP54-218ENST00000515460 ZBTB12Q9Y330 459 aaPredicted RBP15.86■□□□□ 0.13
NUP54-218ENST00000515460 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
NUP54-218ENST00000515460 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
NUP54-218ENST00000515460 POTEHQ6S545 545 aa15.72■□□□□ 0.11
NUP54-218ENST00000515460 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
NUP54-218ENST00000515460 FBLN2P98095 1184 aa15.6■□□□□ 0.09
NUP54-218ENST00000515460 AKT1S1Q96B36 256 aa15.58■□□□□ 0.08
NUP54-218ENST00000515460 CHRDL2Q6WN34 429 aa15.53■□□□□ 0.08
NUP54-218ENST00000515460 MKRN4PQ13434 485 aaPredicted RBP15.49■□□□□ 0.07
NUP54-218ENST00000515460 REM2Q8IYK8 340 aaPredicted RBP15.47■□□□□ 0.07
NUP54-218ENST00000515460 SPDYE2BA6NHP3 402 aa15.4■□□□□ 0.06
NUP54-218ENST00000515460 SPDYE6P0CI01 402 aa15.4■□□□□ 0.06
NUP54-218ENST00000515460 SPDYE2Q495Y8 402 aa15.4■□□□□ 0.06
NUP54-218ENST00000515460 ZNF692Q9BU19 519 aaPredicted RBP15.31■□□□□ 0.04
NUP54-218ENST00000515460 PITPNM1O00562 1244 aa15.3■□□□□ 0.04
NUP54-218ENST00000515460 PIP4P2Q8N4L2 257 aa15.2■□□□□ 0.02
NUP54-218ENST00000515460 SSUH2Q9Y2M2 353 aa15.19■□□□□ 0.02
NUP54-218ENST00000515460 CLEC11AQ9Y240 323 aa15.16■□□□□ 0.02
NUP54-218ENST00000515460 FXR2P51116 673 aaKnown RBP eCLIP15.1■□□□□ 0.01
NUP54-218ENST00000515460 SPDYE1Q8NFV5 336 aaPredicted RBP15.1■□□□□ 0.01
NUP54-218ENST00000515460 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
NUP54-218ENST00000515460 HAX1O00165 279 aa14.93□□□□□ -0.02
NUP54-218ENST00000515460 PRKAR2AP13861 404 aaKnown RBP14.93□□□□□ -0.02
NUP54-218ENST00000515460 PRR29P0C7W0 189 aa14.9□□□□□ -0.02
NUP54-218ENST00000515460 SPDYE4A6NLX3 237 aa14.88□□□□□ -0.03
NUP54-218ENST00000515460 CHADLQ6NUI6 762 aa14.83□□□□□ -0.04
NUP54-218ENST00000515460 SP7Q8TDD2 431 aaPredicted RBP14.81□□□□□ -0.04
NUP54-218ENST00000515460 EVX2Q03828 476 aa14.73□□□□□ -0.05
NUP54-218ENST00000515460 STAG3Q9UJ98 1225 aa14.65□□□□□ -0.06
NUP54-218ENST00000515460 C19orf67A6NJJ6 358 aa14.61□□□□□ -0.07
NUP54-218ENST00000515460 FARP1Q9Y4F1 1045 aaPredicted RBP14.59□□□□□ -0.07
NUP54-218ENST00000515460 CREBZFQ9NS37 354 aa14.53□□□□□ -0.08
NUP54-218ENST00000515460 CD44P16070 742 aaKnown RBP14.47□□□□□ -0.09
NUP54-218ENST00000515460 PROM2Q8N271 834 aa14.44□□□□□ -0.1
NUP54-218ENST00000515460 GABBR2O75899 941 aa14.39□□□□□ -0.11
NUP54-218ENST00000515460 FKBP8Q14318 412 aa14.35□□□□□ -0.11
NUP54-218ENST00000515460 ZRANB1Q9UGI0 708 aa14.31□□□□□ -0.12
NUP54-218ENST00000515460 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.13
NUP54-218ENST00000515460 MNX1P50219 401 aaPredicted RBP14.27□□□□□ -0.13
NUP54-218ENST00000515460 MIER1Q8N108 512 aa14.22□□□□□ -0.13
NUP54-218ENST00000515460 PAK3O75914 559 aaPredicted RBP14.21□□□□□ -0.13
NUP54-218ENST00000515460 ZNF579Q8NAF0 562 aaKnown RBP14.19□□□□□ -0.14
NUP54-218ENST00000515460 PLEKHG5O94827 1062 aa14.16□□□□□ -0.14
NUP54-218ENST00000515460 CLCN6P51797 869 aa14.13□□□□□ -0.15
NUP54-218ENST00000515460 PHF12Q96QT6 1004 aa14.13□□□□□ -0.15
NUP54-218ENST00000515460 PLCD3Q8N3E9 789 aa14.12□□□□□ -0.15
NUP54-218ENST00000515460 TSPYL2Q9H2G4 693 aaPredicted RBP14.09□□□□□ -0.15
NUP54-218ENST00000515460 GALR2O43603 387 aaPredicted RBP14.07□□□□□ -0.16
NUP54-218ENST00000515460 POTEIP0CG38 1075 aa14.07□□□□□ -0.16
NUP54-218ENST00000515460 DCBLD2Q96PD2 775 aa14.07□□□□□ -0.16
NUP54-218ENST00000515460 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
NUP54-218ENST00000515460 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
NUP54-218ENST00000515460 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms