RNA–Protein interactions for RNA: ENST00000513868.6

PVT1-203, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best) BASIC

Gene PVT1, Length 1,699 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-203ENST00000513868 NISCHQ9Y2I1 1504 aa29.22■■■□□ 2.27
PVT1-203ENST00000513868 CCDC180Q9P1Z9 1646 aa25.5■■□□□ 1.67
PVT1-203ENST00000513868 ZCCHC6Q5VYS8 1495 aaKnown RBP24.56■■□□□ 1.52
PVT1-203ENST00000513868 DCAF1Q9Y4B6 1507 aa24.16■■□□□ 1.46
PVT1-203ENST00000513868 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
PVT1-203ENST00000513868 ABCC9O60706 1549 aa24.01■■□□□ 1.43
PVT1-203ENST00000513868 MYO15BQ96JP2 1530 aa23.85■■□□□ 1.41
PVT1-203ENST00000513868 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
PVT1-203ENST00000513868 NACADO15069 1562 aa23.69■■□□□ 1.38
PVT1-203ENST00000513868 RB1CC1Q8TDY2 1594 aa23.47■■□□□ 1.35
PVT1-203ENST00000513868 SCRIBQ14160 1630 aa23.42■■□□□ 1.34
PVT1-203ENST00000513868 UNC13AQ9UPW8 1703 aa23.17■■□□□ 1.3
PVT1-203ENST00000513868 SUPT5HO00267 1087 aaKnown RBP22.9■■□□□ 1.26
PVT1-203ENST00000513868 BICRAQ9NZM4 1560 aa22.85■■□□□ 1.25
PVT1-203ENST00000513868 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
PVT1-203ENST00000513868 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
PVT1-203ENST00000513868 PABPN1Q86U42 306 aaKnown RBP eCLIP22.63■■□□□ 1.21
PVT1-203ENST00000513868 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
PVT1-203ENST00000513868 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
PVT1-203ENST00000513868 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
PVT1-203ENST00000513868 WIZO95785 1651 aa22.45■■□□□ 1.18
PVT1-203ENST00000513868 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
PVT1-203ENST00000513868 TOP2AP11388 1531 aaKnown RBP22.16■■□□□ 1.14
PVT1-203ENST00000513868 EIF4G1Q04637 1599 aaKnown RBP22.1■■□□□ 1.13
PVT1-203ENST00000513868 ATAD2BQ9ULI0 1458 aa22.06■■□□□ 1.12
PVT1-203ENST00000513868 SMARCA2P51531 1590 aa22.04■■□□□ 1.12
PVT1-203ENST00000513868 CHIC1Q5VXU3 224 aa21.98■■□□□ 1.11
PVT1-203ENST00000513868 CCDC88BA6NC98 1476 aa21.94■■□□□ 1.1
PVT1-203ENST00000513868 BAZ1BQ9UIG0 1483 aaKnown RBP21.91■■□□□ 1.1
PVT1-203ENST00000513868 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
PVT1-203ENST00000513868 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
PVT1-203ENST00000513868 CC2D2AQ9P2K1 1620 aa21.78■■□□□ 1.08
PVT1-203ENST00000513868 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
PVT1-203ENST00000513868 ABCC8Q09428 1581 aa21.51■■□□□ 1.03
PVT1-203ENST00000513868 PRDM2Q13029 1718 aa21.4■■□□□ 1.02
PVT1-203ENST00000513868 CFTRP13569 1480 aa21.39■■□□□ 1.01
PVT1-203ENST00000513868 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
PVT1-203ENST00000513868 SYNJ1O43426 1573 aa21.29■■□□□ 1
PVT1-203ENST00000513868 CADPSQ9ULU8 1353 aa21.27■■□□□ 1
PVT1-203ENST00000513868 DNAJC5BQ9UF47 199 aa21.24■□□□□ 0.99
PVT1-203ENST00000513868 BIVM-ERCC5R4GMW8 1640 aa21.2■□□□□ 0.98
PVT1-203ENST00000513868 TOP2BQ02880 1626 aa21.19■□□□□ 0.98
PVT1-203ENST00000513868 LOC105371045A0A1W2PR82 267 aa21.15■□□□□ 0.98
PVT1-203ENST00000513868 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
PVT1-203ENST00000513868 NESP48681 1621 aa21.13■□□□□ 0.97
PVT1-203ENST00000513868 LAMC3Q9Y6N6 1575 aa21.12■□□□□ 0.97
PVT1-203ENST00000513868 CUX1P39880 1505 aa21.12■□□□□ 0.97
PVT1-203ENST00000513868 SOGA1O94964 1423 aa21.09■□□□□ 0.97
PVT1-203ENST00000513868 FANCD2Q9BXW9 1451 aa21.06■□□□□ 0.96
PVT1-203ENST00000513868 RUSC2Q8N2Y8 1516 aa21.04■□□□□ 0.96
PVT1-203ENST00000513868 EEA1Q15075 1411 aa21■□□□□ 0.95
PVT1-203ENST00000513868 KIF21AQ7Z4S6 1674 aa20.94■□□□□ 0.94
PVT1-203ENST00000513868 CEP164Q9UPV0 1460 aa20.91■□□□□ 0.94
PVT1-203ENST00000513868 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
PVT1-203ENST00000513868 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
PVT1-203ENST00000513868 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.93
PVT1-203ENST00000513868 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
PVT1-203ENST00000513868 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
PVT1-203ENST00000513868 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.93
PVT1-203ENST00000513868 EHMT2Q96KQ7 1210 aa20.83■□□□□ 0.92
PVT1-203ENST00000513868 KIF21BO75037 1637 aa20.8■□□□□ 0.92
PVT1-203ENST00000513868 POLA1P09884 1462 aaPredicted RBP20.75■□□□□ 0.91
PVT1-203ENST00000513868 KIF27Q86VH2 1401 aa20.75■□□□□ 0.91
PVT1-203ENST00000513868 GOLGA3Q08378 1498 aa20.73■□□□□ 0.91
PVT1-203ENST00000513868 CUX2O14529 1486 aa20.7■□□□□ 0.9
PVT1-203ENST00000513868 WDR97A6NE52 1622 aa20.69■□□□□ 0.9
PVT1-203ENST00000513868 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
PVT1-203ENST00000513868 ABCA10Q8WWZ4 1543 aa20.68■□□□□ 0.9
PVT1-203ENST00000513868 TNIKQ9UKE5 1360 aa20.67■□□□□ 0.9
PVT1-203ENST00000513868 PRXQ9BXM0 1461 aa20.66■□□□□ 0.9
PVT1-203ENST00000513868 MRC2Q9UBG0 1479 aa20.66■□□□□ 0.9
PVT1-203ENST00000513868 RAPGEF2Q9Y4G8 1499 aa20.65■□□□□ 0.9
PVT1-203ENST00000513868 ERICH3Q5RHP9 1530 aa20.63■□□□□ 0.89
PVT1-203ENST00000513868 TARBP1Q13395 1621 aaKnown RBP20.59■□□□□ 0.89
PVT1-203ENST00000513868 UBTFP17480 764 aaKnown RBP20.59■□□□□ 0.89
PVT1-203ENST00000513868 IGF1RP08069 1367 aa20.59■□□□□ 0.89
PVT1-203ENST00000513868 WDR62O43379 1518 aa20.59■□□□□ 0.89
PVT1-203ENST00000513868 CEP162Q5TB80 1403 aa20.57■□□□□ 0.88
PVT1-203ENST00000513868 THOC2Q8NI27 1593 aaKnown RBP20.55■□□□□ 0.88
PVT1-203ENST00000513868 ABCA5Q8WWZ7 1642 aa20.55■□□□□ 0.88
PVT1-203ENST00000513868 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
PVT1-203ENST00000513868 CUL7Q14999 1698 aa20.47■□□□□ 0.87
PVT1-203ENST00000513868 CARMIL1Q5VZK9 1371 aa20.46■□□□□ 0.87
PVT1-203ENST00000513868 TDRD9Q8NDG6 1382 aaKnown RBP20.46■□□□□ 0.87
PVT1-203ENST00000513868 GAPVD1Q14C86 1478 aa20.44■□□□□ 0.86
PVT1-203ENST00000513868 PBRM1Q86U86 1689 aa20.41■□□□□ 0.86
PVT1-203ENST00000513868 IFT140Q96RY7 1462 aa20.4■□□□□ 0.86
PVT1-203ENST00000513868 CLIP1P30622 1438 aa20.39■□□□□ 0.85
PVT1-203ENST00000513868 AQRO60306 1485 aaKnown RBP eCLIP20.34■□□□□ 0.852e-7■■■■■ 33.4
PVT1-203ENST00000513868 ZNF608Q9ULD9 1512 aaPredicted RBP20.33■□□□□ 0.85
PVT1-203ENST00000513868 CTTNBP2Q8WZ74 1663 aa20.3■□□□□ 0.84
PVT1-203ENST00000513868 EIF4G3O43432 1585 aaKnown RBP20.29■□□□□ 0.84
PVT1-203ENST00000513868 GRIN2BQ13224 1484 aa20.26■□□□□ 0.83
PVT1-203ENST00000513868 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
PVT1-203ENST00000513868 RANGAP1P46060 587 aaPredicted RBP20.24■□□□□ 0.83
PVT1-203ENST00000513868 ARAP1Q96P48 1450 aa20.24■□□□□ 0.83
PVT1-203ENST00000513868 VPS8Q8N3P4 1428 aa20.22■□□□□ 0.83
PVT1-203ENST00000513868 ARHGAP35Q9NRY4 1499 aa20.22■□□□□ 0.83
PVT1-203ENST00000513868 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
PVT1-203ENST00000513868 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms