RNA–Protein interactions for RNA: ENST00000513868.6

PVT1-203, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best) BASIC

Gene PVT1, Length 1,699 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-203ENST00000513868 RBFOX2O43251 390 aaKnown RBP eCLIP10.5□□□□□ -0.732e-12■■■■□ 22
PVT1-203ENST00000513868 EIF3HO15372 352 aaKnown RBP eCLIP13.21□□□□□ -0.33e-12■■■■■ 53.6
PVT1-203ENST00000513868 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.33□□□□□ -0.442e-11■□□□□ 10.7
PVT1-203ENST00000513868 NOLC1Q14978 699 aaKnown RBP eCLIP14.19□□□□□ -0.146e-11■■■■□ 21.2
PVT1-203ENST00000513868 SF3B4Q15427 424 aaKnown RBP eCLIP11.13□□□□□ -0.632e-9■■■□□ 17.6
PVT1-203ENST00000513868 PCBP1Q15365 356 aaKnown RBP eCLIP13.82□□□□□ -0.24e-9■■■■□ 19.5
PVT1-203ENST00000513868 U2AF1Q01081 240 aaKnown RBP eCLIP17.01■□□□□ 0.319e-9■■■■■ 30
PVT1-203ENST00000513868 FUBP3Q96I24 572 aaKnown RBP eCLIP13.38□□□□□ -0.279e-9■■■■■ 53.3
PVT1-203ENST00000513868 RBM15Q96T37 977 aaKnown RBP eCLIP13.26□□□□□ -0.291e-8■■■■□ 24.6
PVT1-203ENST00000513868 TAF15Q92804 592 aaKnown RBP eCLIP10.29□□□□□ -0.761e-8■■■■■ 27.8
PVT1-203ENST00000513868 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.272e-8■■□□□ 12.1
PVT1-203ENST00000513868 DDX3XO00571 662 aaKnown RBP eCLIP13.88□□□□□ -0.193e-8■□□□□ 10.9
PVT1-203ENST00000513868 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.35□□□□□ -0.113e-8■□□□□ 9.9
PVT1-203ENST00000513868 HNRNPLP14866 589 aaKnown RBP eCLIP12.71□□□□□ -0.378e-8■■■□□ 17.6
PVT1-203ENST00000513868 DKC1O60832 514 aaKnown RBP eCLIP14.17□□□□□ -0.148e-8■■■■■ 67.5
PVT1-203ENST00000513868 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.61□□□□□ -0.238e-8■■■□□ 15.3
PVT1-203ENST00000513868 YBX3P16989 372 aaKnown RBP eCLIP14.71□□□□□ -0.051e-7■■□□□ 11.8
PVT1-203ENST00000513868 SRSF9Q13242 221 aaKnown RBP eCLIP8.69□□□□□ -1.021e-7■□□□□ 9.5
PVT1-203ENST00000513868 U2AF2P26368 475 aaKnown RBP eCLIP14.9□□□□□ -0.021e-7■■■■□ 25.2
PVT1-203ENST00000513868 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.88□□□□□ -0.192e-7■■■■■ 28.4
PVT1-203ENST00000513868 ZNF622Q969S3 477 aaKnown RBP eCLIP15.22■□□□□ 0.032e-7■■■■□ 24.3
PVT1-203ENST00000513868 AQRO60306 1485 aaKnown RBP eCLIP20.34■□□□□ 0.852e-7■■■■■ 33.4
PVT1-203ENST00000513868 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.4□□□□□ -0.582e-7■□□□□ 9.8
PVT1-203ENST00000513868 EIF3DO15371 548 aaKnown RBP eCLIP14.19□□□□□ -0.143e-7■■■■□ 25.7
PVT1-203ENST00000513868 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.16□□□□□ -0.143e-7■■■■□ 20.5
PVT1-203ENST00000513868 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.79□□□□□ -0.043e-7■■■■□ 21.3
PVT1-203ENST00000513868 CSTF2P33240 577 aaKnown RBP eCLIP11.88□□□□□ -0.513e-7■■□□□ 13.6
PVT1-203ENST00000513868 ILF3Q12906 894 aaKnown RBP eCLIP12.32□□□□□ -0.443e-7■■■□□ 17.4
PVT1-203ENST00000513868 MATR3P43243 847 aaKnown RBP eCLIP13.91□□□□□ -0.184e-7■■■■□ 19.3
PVT1-203ENST00000513868 TRA2AQ13595 282 aaKnown RBP eCLIP11.9□□□□□ -0.55e-7■■■■□ 26.4
PVT1-203ENST00000513868 PTBP1P26599 531 aaKnown RBP eCLIP11.24□□□□□ -0.615e-7■■■■■ 42.6
PVT1-203ENST00000513868 HLTFQ14527 1009 aaKnown RBP eCLIP13.4□□□□□ -0.265e-7■■■□□ 16.8
PVT1-203ENST00000513868 PPIGQ13427 754 aaKnown RBP eCLIP13.25□□□□□ -0.295e-7■■□□□ 12.9
PVT1-203ENST00000513868 TARDBPQ13148 414 aaKnown RBP eCLIP11.84□□□□□ -0.515e-7■■■■■ 27.1
PVT1-203ENST00000513868 KHSRPQ92945 711 aaKnown RBP eCLIP13.54□□□□□ -0.246e-7■■■■■ 34.9
PVT1-203ENST00000513868 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.18■□□□□ 0.348e-7■■■□□ 17.1
PVT1-203ENST00000513868 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.88□□□□□ -0.198e-7■■■■■ 154.5
PVT1-203ENST00000513868 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.44■□□□□ 0.228e-7■■□□□ 14.5
PVT1-203ENST00000513868 AGGF1Q8N302 714 aaeCLIP13.21□□□□□ -0.38e-7■■■■□ 20.8
PVT1-203ENST00000513868 PCBP2Q15366 365 aaKnown RBP eCLIP12.61□□□□□ -0.398e-7■■■■□ 26.3
PVT1-203ENST00000513868 RBM22Q9NW64 420 aaKnown RBP eCLIP13.1□□□□□ -0.319e-7■■■□□ 15.2
PVT1-203ENST00000513868 NONOQ15233 471 aaKnown RBP eCLIP14.65□□□□□ -0.069e-7■■■■□ 23.6
PVT1-203ENST00000513868 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.32□□□□□ -0.769e-7■■■■■ 39.3
PVT1-203ENST00000513868 QKIQ96PU8 341 aaKnown RBP eCLIP13.28□□□□□ -0.289e-7■■■■□ 20
PVT1-203ENST00000513868 EIF4G2P78344 907 aaKnown RBP eCLIP18.19■□□□□ 0.59e-7■■■■□ 21
PVT1-203ENST00000513868 HNRNPKP61978 463 aaKnown RBP eCLIP12.22□□□□□ -0.451e-6■■□□□ 14.5
PVT1-203ENST00000513868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.551e-6■■■■□ 19.8
PVT1-203ENST00000513868 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.111e-6■■■□□ 18.3
PVT1-203ENST00000513868 HNRNPMP52272 730 aaKnown RBP eCLIP18.92■□□□□ 0.621e-6■■■■■ 30.3
PVT1-203ENST00000513868 HNRNPCP07910 306 aaKnown RBP eCLIP10.97□□□□□ -0.651e-6■■□□□ 11.6
PVT1-203ENST00000513868 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.42□□□□□ -0.261e-6■■■□□ 18.2
PVT1-203ENST00000513868 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.93□□□□□ -0.342e-6■■■■□ 22.1
PVT1-203ENST00000513868 NIPBLQ6KC79 2804 aaeCLIP9.65□□□□□ -0.872e-6■■■■□ 25.1
PVT1-203ENST00000513868 SFPQP23246 707 aaKnown RBP eCLIP14.2□□□□□ -0.142e-6■■□□□ 12
PVT1-203ENST00000513868 PRPF4O43172 522 aaKnown RBP eCLIP13.02□□□□□ -0.323e-6■■■□□ 16.4
PVT1-203ENST00000513868 TIAL1Q01085 375 aaKnown RBP eCLIP12.85□□□□□ -0.353e-6■■■■□ 20.6
PVT1-203ENST00000513868 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■■■■■ 50.8
PVT1-203ENST00000513868 FMR1Q06787 632 aaKnown RBP eCLIP14.45□□□□□ -0.13e-6■■■■■ 44.3
PVT1-203ENST00000513868 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.28□□□□□ -0.283e-6■■■■□ 22.1
PVT1-203ENST00000513868 GTF2F1P35269 517 aaKnown RBP eCLIP13.88□□□□□ -0.193e-6■■□□□ 13.2
PVT1-203ENST00000513868 EFTUD2Q15029 972 aaKnown RBP eCLIP13.12□□□□□ -0.314e-6■■□□□ 11.5
PVT1-203ENST00000513868 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.68□□□□□ -0.224e-6■■□□□ 12.8
PVT1-203ENST00000513868 SRSF1Q07955 248 aaKnown RBP eCLIP10.55□□□□□ -0.725e-6■□□□□ 9
PVT1-203ENST00000513868 SRSF7Q16629 238 aaKnown RBP eCLIP10.85□□□□□ -0.676e-6■■■■□ 19.6
PVT1-203ENST00000513868 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.53□□□□□ -0.567e-6■□□□□ 11.3
PVT1-203ENST00000513868 SF3B1O75533 1304 aaKnown RBP eCLIP13.39□□□□□ -0.279e-6■■■■■ 68.9
PVT1-203ENST00000513868 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.74□□□□□ -0.379e-6■■□□□ 12.4
PVT1-203ENST00000513868 TIA1P31483 386 aaKnown RBP eCLIP12.32□□□□□ -0.441e-5■□□□□ 11
Retrieved 68 of 68 RNA–protein pairs in 14.4 ms