RNA–Protein interactions for RNA: ENST00000509112.1

CALCOCO2-213, Transcript of calcium binding and coiled-coil domain 2, humanhuman

TSL 3

Gene CALCOCO2, Length 459 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO2-213ENST00000509112 AEBP2Q6ZN18 517 aaPredicted RBP15.43■□□□□ 0.06
CALCOCO2-213ENST00000509112 CHIC1Q5VXU3 224 aa15.34■□□□□ 0.05
CALCOCO2-213ENST00000509112 PHF23Q9BUL5 403 aaPredicted RBP13.43□□□□□ -0.26
CALCOCO2-213ENST00000509112 SENP3Q9H4L4 574 aaPredicted RBP13.2□□□□□ -0.3
CALCOCO2-213ENST00000509112 PLPPR3Q6T4P5 718 aa12.57□□□□□ -0.4
CALCOCO2-213ENST00000509112 FOXD1Q16676 465 aa12.13□□□□□ -0.47
CALCOCO2-213ENST00000509112 PPP6R1Q9UPN7 881 aa11.75□□□□□ -0.53
CALCOCO2-213ENST00000509112 ADRA2BP18089 450 aa11.74□□□□□ -0.53
CALCOCO2-213ENST00000509112 PIAS4Q8N2W9 510 aaPredicted RBP11.48□□□□□ -0.57
CALCOCO2-213ENST00000509112 MSH5O43196 834 aa11.24□□□□□ -0.61
CALCOCO2-213ENST00000509112 NISCHQ9Y2I1 1504 aa11.17□□□□□ -0.62
CALCOCO2-213ENST00000509112 PPP4R3CPQ6ZMV5 832 aa11.02□□□□□ -0.65
CALCOCO2-213ENST00000509112 SCAF1Q9H7N4 1312 aaKnown RBP10.93□□□□□ -0.66
CALCOCO2-213ENST00000509112 KCNA4P22459 653 aa10.91□□□□□ -0.66
CALCOCO2-213ENST00000509112 NCBP3Q53F19 620 aaKnown RBP10.88□□□□□ -0.67
CALCOCO2-213ENST00000509112 CNKSR2Q8WXI2 1034 aa10.75□□□□□ -0.69
CALCOCO2-213ENST00000509112 NPM3O75607 178 aaKnown RBP10.62□□□□□ -0.71
CALCOCO2-213ENST00000509112 MAPK8IP2Q13387 824 aaPredicted RBP10.57□□□□□ -0.72
CALCOCO2-213ENST00000509112 DMRT2Q9Y5R5 561 aa10.55□□□□□ -0.72
CALCOCO2-213ENST00000509112 DNAJC5BQ9UF47 199 aa10.54□□□□□ -0.72
CALCOCO2-213ENST00000509112 RNF216Q9NWF9 866 aaPredicted RBP10.51□□□□□ -0.73
CALCOCO2-213ENST00000509112 SLC4A1APQ9BWU0 796 aaKnown RBP10.47□□□□□ -0.73
CALCOCO2-213ENST00000509112 HOXD11P31277 338 aaPredicted RBP10.43□□□□□ -0.74
CALCOCO2-213ENST00000509112 EHMT2Q96KQ7 1210 aa10.24□□□□□ -0.77
CALCOCO2-213ENST00000509112 CCDC180Q9P1Z9 1646 aa10.17□□□□□ -0.78
CALCOCO2-213ENST00000509112 ABCC9O60706 1549 aa10.15□□□□□ -0.78
CALCOCO2-213ENST00000509112 CSRNP3Q8WYN3 585 aa10.14□□□□□ -0.79
CALCOCO2-213ENST00000509112 FOXD4L1Q9NU39 408 aa10.08□□□□□ -0.8
CALCOCO2-213ENST00000509112 ZBTB22O15209 634 aa10.02□□□□□ -0.81
CALCOCO2-213ENST00000509112 SLC4A2P04920 1241 aa9.98□□□□□ -0.81
CALCOCO2-213ENST00000509112 POTEDQ86YR6 584 aa9.95□□□□□ -0.82
CALCOCO2-213ENST00000509112 DCAF8L1A6NGE4 600 aa9.92□□□□□ -0.82
CALCOCO2-213ENST00000509112 MYCNP04198 464 aaPredicted RBP9.88□□□□□ -0.83
CALCOCO2-213ENST00000509112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.84□□□□□ -0.832e-10■■□□□ 14.5
CALCOCO2-213ENST00000509112 ATXN8OSP0DMR3 200 aa9.82□□□□□ -0.84
CALCOCO2-213ENST00000509112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.8□□□□□ -0.84
CALCOCO2-213ENST00000509112 HNRNPUL2Q1KMD3 747 aaKnown RBP9.8□□□□□ -0.84
CALCOCO2-213ENST00000509112 SAMD1Q6SPF0 538 aaPredicted RBP9.73□□□□□ -0.85
CALCOCO2-213ENST00000509112 U3KPZ7 1027 aaPredicted RBP9.71□□□□□ -0.86
CALCOCO2-213ENST00000509112 RB1CC1Q8TDY2 1594 aa9.71□□□□□ -0.86
CALCOCO2-213ENST00000509112 APLP2Q06481 763 aa9.68□□□□□ -0.86
CALCOCO2-213ENST00000509112 NACADO15069 1562 aa9.63□□□□□ -0.87
CALCOCO2-213ENST00000509112 RNF39Q9H2S5 420 aa9.6□□□□□ -0.87
CALCOCO2-213ENST00000509112 C1QBPQ07021 282 aaKnown RBP9.55□□□□□ -0.88
CALCOCO2-213ENST00000509112 MYO15BQ96JP2 1530 aa9.51□□□□□ -0.89
CALCOCO2-213ENST00000509112 UNC13AQ9UPW8 1703 aa9.49□□□□□ -0.89
CALCOCO2-213ENST00000509112 ATF5Q9Y2D1 282 aaPredicted RBP9.45□□□□□ -0.9
CALCOCO2-213ENST00000509112 ZNF219Q9P2Y4 722 aaPredicted RBP9.44□□□□□ -0.9
CALCOCO2-213ENST00000509112 BICRAQ9NZM4 1560 aa9.41□□□□□ -0.9
CALCOCO2-213ENST00000509112 SHROOM4Q9ULL8 1493 aa9.39□□□□□ -0.91
CALCOCO2-213ENST00000509112 PABPN1Q86U42 306 aaKnown RBP eCLIP9.37□□□□□ -0.91
CALCOCO2-213ENST00000509112 SPINK5Q9NQ38 1064 aaPredicted RBP9.32□□□□□ -0.92
CALCOCO2-213ENST00000509112 DCAF1Q9Y4B6 1507 aa9.31□□□□□ -0.92
CALCOCO2-213ENST00000509112 CAPN15O75808 1086 aa9.3□□□□□ -0.92
CALCOCO2-213ENST00000509112 DCAF8L2P0C7V8 631 aa9.3□□□□□ -0.92
CALCOCO2-213ENST00000509112 TRHP20396 242 aaPredicted RBP9.27□□□□□ -0.93
CALCOCO2-213ENST00000509112 ZCCHC6Q5VYS8 1495 aaKnown RBP9.23□□□□□ -0.93
CALCOCO2-213ENST00000509112 ZBTB12Q9Y330 459 aaPredicted RBP9.23□□□□□ -0.93
CALCOCO2-213ENST00000509112 CC2D2AQ9P2K1 1620 aa9.23□□□□□ -0.93
CALCOCO2-213ENST00000509112 POLA2Q14181 598 aa9.21□□□□□ -0.94
CALCOCO2-213ENST00000509112 CECR2Q9BXF3 1484 aa9.21□□□□□ -0.94
CALCOCO2-213ENST00000509112 EIF4G1Q04637 1599 aaKnown RBP9.19□□□□□ -0.94
CALCOCO2-213ENST00000509112 FBLN2P98095 1184 aa9.18□□□□□ -0.94
CALCOCO2-213ENST00000509112 DSG3P32926 999 aa9.17□□□□□ -0.94
CALCOCO2-213ENST00000509112 CACNB1Q02641 598 aaPredicted RBP9.16□□□□□ -0.94
CALCOCO2-213ENST00000509112 FKBP8Q14318 412 aa9.13□□□□□ -0.95
CALCOCO2-213ENST00000509112 SCRIBQ14160 1630 aa9.11□□□□□ -0.95
CALCOCO2-213ENST00000509112 MKRN4PQ13434 485 aaPredicted RBP9.1□□□□□ -0.95
CALCOCO2-213ENST00000509112 ABCB7O75027 752 aa9.07□□□□□ -0.96
CALCOCO2-213ENST00000509112 DNAJC5Q9H3Z4 198 aa9.05□□□□□ -0.96
CALCOCO2-213ENST00000509112 SPDYE4A6NLX3 237 aa9.01□□□□□ -0.97
CALCOCO2-213ENST00000509112 PROM2Q8N271 834 aa8.99□□□□□ -0.97
CALCOCO2-213ENST00000509112 SPDYE2BA6NHP3 402 aa8.95□□□□□ -0.98
CALCOCO2-213ENST00000509112 SPDYE6P0CI01 402 aa8.95□□□□□ -0.98
CALCOCO2-213ENST00000509112 SPDYE2Q495Y8 402 aa8.95□□□□□ -0.98
CALCOCO2-213ENST00000509112 CUX2O14529 1486 aa8.94□□□□□ -0.98
CALCOCO2-213ENST00000509112 FBXO3Q9UK99 471 aa8.91□□□□□ -0.98
CALCOCO2-213ENST00000509112 SSUH2Q9Y2M2 353 aa8.88□□□□□ -0.99
CALCOCO2-213ENST00000509112 NCAPD3P42695 1498 aa8.88□□□□□ -0.99
CALCOCO2-213ENST00000509112 OSCARQ8IYS5 282 aa8.86□□□□□ -0.99
CALCOCO2-213ENST00000509112 ZNF692Q9BU19 519 aaPredicted RBP8.86□□□□□ -0.99
CALCOCO2-213ENST00000509112 RBM42Q9BTD8 480 aaKnown RBP8.83□□□□□ -1
CALCOCO2-213ENST00000509112 HMGXB3Q12766 1538 aa8.8□□□□□ -1
CALCOCO2-213ENST00000509112 ERCC6Q03468 1493 aa8.79□□□□□ -1
CALCOCO2-213ENST00000509112 ATAD2BQ9ULI0 1458 aa8.79□□□□□ -1
CALCOCO2-213ENST00000509112 SMARCA2P51531 1590 aa8.78□□□□□ -1
CALCOCO2-213ENST00000509112 STAG3Q9UJ98 1225 aa8.75□□□□□ -1.01
CALCOCO2-213ENST00000509112 SMARCA4P51532 1647 aa8.75□□□□□ -1.01
CALCOCO2-213ENST00000509112 AMER1Q5JTC6 1135 aaPredicted RBP8.74□□□□□ -1.01
CALCOCO2-213ENST00000509112 PEG3Q9GZU2 1588 aa8.73□□□□□ -1.01
CALCOCO2-213ENST00000509112 AKT1S1Q96B36 256 aa8.73□□□□□ -1.01
CALCOCO2-213ENST00000509112 THOC2Q8NI27 1593 aaKnown RBP8.71□□□□□ -1.02
CALCOCO2-213ENST00000509112 LAMC3Q9Y6N6 1575 aa8.71□□□□□ -1.02
CALCOCO2-213ENST00000509112 BAZ1AQ9NRL2 1556 aaPredicted RBP8.69□□□□□ -1.02
CALCOCO2-213ENST00000509112 VASPP50552 380 aaPredicted RBP8.69□□□□□ -1.02
CALCOCO2-213ENST00000509112 NESP48681 1621 aa8.68□□□□□ -1.02
CALCOCO2-213ENST00000509112 BAZ1BQ9UIG0 1483 aaKnown RBP8.67□□□□□ -1.02
CALCOCO2-213ENST00000509112 PDS5BQ9NTI5 1447 aa8.63□□□□□ -1.03
CALCOCO2-213ENST00000509112 SPDYE1Q8NFV5 336 aaPredicted RBP8.62□□□□□ -1.03
CALCOCO2-213ENST00000509112 KIF21AQ7Z4S6 1674 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms