RNA–Protein interactions for RNA: ENST00000508312.5

DDR1-262, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene DDR1, Length 3,073 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-262ENST00000508312 NISCHQ9Y2I1 1504 aa25.13■■□□□ 1.61
DDR1-262ENST00000508312 SHROOM4Q9ULL8 1493 aa22.26■■□□□ 1.15
DDR1-262ENST00000508312 DCAF8L2P0C7V8 631 aa21.81■■□□□ 1.08
DDR1-262ENST00000508312 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
DDR1-262ENST00000508312 CCDC180Q9P1Z9 1646 aa21.39■■□□□ 1.02
DDR1-262ENST00000508312 HRCP23327 699 aa21.34■■□□□ 1.01
DDR1-262ENST00000508312 ZCCHC6Q5VYS8 1495 aaKnown RBP21.19■□□□□ 0.98
DDR1-262ENST00000508312 PPARGC1BQ86YN6 1023 aaKnown RBP21.08■□□□□ 0.97
DDR1-262ENST00000508312 PCGF6Q9BYE7 350 aa21■□□□□ 0.95
DDR1-262ENST00000508312 PELP1Q8IZL8 1130 aaKnown RBP20.9■□□□□ 0.94
DDR1-262ENST00000508312 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
DDR1-262ENST00000508312 MYO15BQ96JP2 1530 aa20.77■□□□□ 0.92
DDR1-262ENST00000508312 LOC105371045A0A1W2PR82 267 aa20.53■□□□□ 0.88
DDR1-262ENST00000508312 EHMT2Q96KQ7 1210 aa20.44■□□□□ 0.86
DDR1-262ENST00000508312 DCAF1Q9Y4B6 1507 aa20.39■□□□□ 0.85
DDR1-262ENST00000508312 SCAF1Q9H7N4 1312 aaKnown RBP20.37■□□□□ 0.85
DDR1-262ENST00000508312 SCRIBQ14160 1630 aa20.31■□□□□ 0.84
DDR1-262ENST00000508312 ABCC9O60706 1549 aa20.29■□□□□ 0.84
DDR1-262ENST00000508312 FAM9AQ8IZU1 332 aaPredicted RBP20.27■□□□□ 0.84
DDR1-262ENST00000508312 MYT1Q01538 1121 aa20.12■□□□□ 0.81
DDR1-262ENST00000508312 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.81
DDR1-262ENST00000508312 RSF1Q96T23 1441 aaPredicted RBP20.04■□□□□ 0.8
DDR1-262ENST00000508312 TRIM41Q8WV44 630 aa20.01■□□□□ 0.79
DDR1-262ENST00000508312 ZEB1P37275 1124 aaPredicted RBP19.96■□□□□ 0.79
DDR1-262ENST00000508312 CECR2Q9BXF3 1484 aa19.94■□□□□ 0.78
DDR1-262ENST00000508312 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.78
DDR1-262ENST00000508312 NACADO15069 1562 aa19.86■□□□□ 0.77
DDR1-262ENST00000508312 ACIN1Q9UKV3 1341 aaKnown RBP19.79■□□□□ 0.76
DDR1-262ENST00000508312 NEUROD1Q13562 356 aa19.77■□□□□ 0.76
DDR1-262ENST00000508312 GTF3C3Q9Y5Q9 886 aa19.75■□□□□ 0.75
DDR1-262ENST00000508312 MROH2BQ7Z745 1585 aa19.74■□□□□ 0.75
DDR1-262ENST00000508312 TTBK1Q5TCY1 1321 aaPredicted RBP19.69■□□□□ 0.74
DDR1-262ENST00000508312 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
DDR1-262ENST00000508312 WIZO95785 1651 aa19.62■□□□□ 0.73
DDR1-262ENST00000508312 CENPBP07199 599 aaPredicted RBP19.6■□□□□ 0.73
DDR1-262ENST00000508312 UNC13AQ9UPW8 1703 aa19.45■□□□□ 0.7
DDR1-262ENST00000508312 DIEXFQ68CQ4 756 aaKnown RBP19.4■□□□□ 0.7
DDR1-262ENST00000508312 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.38■□□□□ 0.69
DDR1-262ENST00000508312 CCER1Q8TC90 406 aaPredicted RBP19.37■□□□□ 0.69
DDR1-262ENST00000508312 ABCC8Q09428 1581 aa19.35■□□□□ 0.69
DDR1-262ENST00000508312 YTHDC1Q96MU7 727 aaKnown RBP19.34■□□□□ 0.69
DDR1-262ENST00000508312 RANGAP1P46060 587 aaPredicted RBP19.27■□□□□ 0.68
DDR1-262ENST00000508312 CCDC88BA6NC98 1476 aa19.25■□□□□ 0.67
DDR1-262ENST00000508312 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
DDR1-262ENST00000508312 BICRAQ9NZM4 1560 aa19.19■□□□□ 0.66
DDR1-262ENST00000508312 SOGA1O94964 1423 aa19.19■□□□□ 0.66
DDR1-262ENST00000508312 UBTFP17480 764 aaKnown RBP19.18■□□□□ 0.66
DDR1-262ENST00000508312 RUSC2Q8N2Y8 1516 aa19.14■□□□□ 0.65
DDR1-262ENST00000508312 SMARCA4P51532 1647 aa19.12■□□□□ 0.65
DDR1-262ENST00000508312 TOP2AP11388 1531 aaKnown RBP19.06■□□□□ 0.64
DDR1-262ENST00000508312 SMARCA2P51531 1590 aa19.05■□□□□ 0.64
DDR1-262ENST00000508312 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.64
DDR1-262ENST00000508312 CSRNP3Q8WYN3 585 aa18.99■□□□□ 0.63
DDR1-262ENST00000508312 BCL11AQ9H165 835 aa18.96■□□□□ 0.63
DDR1-262ENST00000508312 CEP162Q5TB80 1403 aa18.95■□□□□ 0.62
DDR1-262ENST00000508312 ZNF316A6NFI3 1004 aaPredicted RBP18.9■□□□□ 0.62
DDR1-262ENST00000508312 HNRNPUL2Q1KMD3 747 aaKnown RBP18.87■□□□□ 0.61
DDR1-262ENST00000508312 MIER1Q8N108 512 aa18.87■□□□□ 0.61
DDR1-262ENST00000508312 WRNQ14191 1432 aaPredicted RBP eCLIP18.84■□□□□ 0.61
DDR1-262ENST00000508312 ANP32EQ9BTT0 268 aa18.78■□□□□ 0.6
DDR1-262ENST00000508312 ATAD2BQ9ULI0 1458 aa18.75■□□□□ 0.59
DDR1-262ENST00000508312 TNIKQ9UKE5 1360 aa18.74■□□□□ 0.59
DDR1-262ENST00000508312 BAZ1BQ9UIG0 1483 aaKnown RBP18.74■□□□□ 0.59
DDR1-262ENST00000508312 SYNJ1O43426 1573 aa18.73■□□□□ 0.59
DDR1-262ENST00000508312 PEG3Q9GZU2 1588 aa18.71■□□□□ 0.59
DDR1-262ENST00000508312 GOLGA3Q08378 1498 aa18.66■□□□□ 0.58
DDR1-262ENST00000508312 SUPT16HQ9Y5B9 1047 aaKnown RBP18.65■□□□□ 0.58
DDR1-262ENST00000508312 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
DDR1-262ENST00000508312 PRKCSHP14314 528 aaPredicted RBP18.63■□□□□ 0.57
DDR1-262ENST00000508312 TSHZ2Q9NRE2 1034 aa18.62■□□□□ 0.57
DDR1-262ENST00000508312 CLIP1P30622 1438 aa18.61■□□□□ 0.57
DDR1-262ENST00000508312 APLP2Q06481 763 aa18.6■□□□□ 0.57
DDR1-262ENST00000508312 EEA1Q15075 1411 aa18.55■□□□□ 0.56
DDR1-262ENST00000508312 ITGAEP38570 1179 aa18.53■□□□□ 0.56
DDR1-262ENST00000508312 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.55
DDR1-262ENST00000508312 BCANQ96GW7 911 aa18.48■□□□□ 0.55
DDR1-262ENST00000508312 KANK4Q5T7N3 995 aaPredicted RBP18.47■□□□□ 0.55
DDR1-262ENST00000508312 CLSPNQ9HAW4 1339 aa18.43■□□□□ 0.54
DDR1-262ENST00000508312 P3H3Q8IVL6 736 aa18.39■□□□□ 0.54
DDR1-262ENST00000508312 VPS8Q8N3P4 1428 aa18.39■□□□□ 0.53
DDR1-262ENST00000508312 ATP1B4Q9UN42 357 aaPredicted RBP18.38■□□□□ 0.53
DDR1-262ENST00000508312 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
DDR1-262ENST00000508312 KIF21BO75037 1637 aa18.35■□□□□ 0.53
DDR1-262ENST00000508312 HMGXB3Q12766 1538 aa18.34■□□□□ 0.53
DDR1-262ENST00000508312 CUX1P39880 1505 aa18.32■□□□□ 0.52
DDR1-262ENST00000508312 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
DDR1-262ENST00000508312 ARAP1Q96P48 1450 aa18.25■□□□□ 0.51
DDR1-262ENST00000508312 FKBP8Q14318 412 aa18.23■□□□□ 0.51
DDR1-262ENST00000508312 CC2D2AQ9P2K1 1620 aa18.22■□□□□ 0.51
DDR1-262ENST00000508312 KIF27Q86VH2 1401 aa18.2■□□□□ 0.5
DDR1-262ENST00000508312 PRXQ9BXM0 1461 aa18.2■□□□□ 0.5
DDR1-262ENST00000508312 CUX2O14529 1486 aa18.2■□□□□ 0.5
DDR1-262ENST00000508312 ERICH6Q7L0X2 663 aa18.19■□□□□ 0.5
DDR1-262ENST00000508312 RBM19Q9Y4C8 960 aaKnown RBP18.19■□□□□ 0.5
DDR1-262ENST00000508312 DNAJC5BQ9UF47 199 aa18.19■□□□□ 0.5
DDR1-262ENST00000508312 CFTRP13569 1480 aa18.15■□□□□ 0.5
DDR1-262ENST00000508312 KCNH8Q96L42 1107 aa18.12■□□□□ 0.49
DDR1-262ENST00000508312 FAM50AQ14320 339 aaKnown RBP18.12■□□□□ 0.49
DDR1-262ENST00000508312 NEFLP07196 543 aa18.12■□□□□ 0.49
DDR1-262ENST00000508312 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms