RNA–Protein interactions for RNA: ENST00000505458.5

NFKB1-205, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NFKB1, Length 3,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-205ENST00000505458 NISCHQ9Y2I1 1504 aa24.84■■□□□ 1.57
NFKB1-205ENST00000505458 CCDC180Q9P1Z9 1646 aa21.66■■□□□ 1.06
NFKB1-205ENST00000505458 ZCCHC6Q5VYS8 1495 aaKnown RBP20.96■□□□□ 0.95
NFKB1-205ENST00000505458 DCAF1Q9Y4B6 1507 aa20.7■□□□□ 0.9
NFKB1-205ENST00000505458 MYO15BQ96JP2 1530 aa20.36■□□□□ 0.85
NFKB1-205ENST00000505458 SHROOM4Q9ULL8 1493 aa20.23■□□□□ 0.83
NFKB1-205ENST00000505458 DCAF8L2P0C7V8 631 aa20.15■□□□□ 0.82
NFKB1-205ENST00000505458 NACADO15069 1562 aa20.05■□□□□ 0.8
NFKB1-205ENST00000505458 ABCC9O60706 1549 aa19.88■□□□□ 0.77
NFKB1-205ENST00000505458 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
NFKB1-205ENST00000505458 SCRIBQ14160 1630 aa19.74■□□□□ 0.75
NFKB1-205ENST00000505458 SUPT5HO00267 1087 aaKnown RBP19.68■□□□□ 0.74
NFKB1-205ENST00000505458 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
NFKB1-205ENST00000505458 UNC13AQ9UPW8 1703 aa19.28■□□□□ 0.68
NFKB1-205ENST00000505458 BAZ1AQ9NRL2 1556 aaPredicted RBP19.22■□□□□ 0.67
NFKB1-205ENST00000505458 CECR2Q9BXF3 1484 aa19.12■□□□□ 0.65
NFKB1-205ENST00000505458 MROH2BQ7Z745 1585 aa19.11■□□□□ 0.65
NFKB1-205ENST00000505458 CHIC1Q5VXU3 224 aa19.1■□□□□ 0.65
NFKB1-205ENST00000505458 SMARCA4P51532 1647 aa19.04■□□□□ 0.64
NFKB1-205ENST00000505458 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
NFKB1-205ENST00000505458 WIZO95785 1651 aa18.98■□□□□ 0.63
NFKB1-205ENST00000505458 TOP2AP11388 1531 aaKnown RBP18.92■□□□□ 0.62
NFKB1-205ENST00000505458 PEG3Q9GZU2 1588 aa18.87■□□□□ 0.61
NFKB1-205ENST00000505458 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
NFKB1-205ENST00000505458 PABPN1Q86U42 306 aaKnown RBP eCLIP18.71■□□□□ 0.59
NFKB1-205ENST00000505458 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
NFKB1-205ENST00000505458 CCDC88BA6NC98 1476 aa18.62■□□□□ 0.57
NFKB1-205ENST00000505458 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
NFKB1-205ENST00000505458 ATAD2BQ9ULI0 1458 aa18.6■□□□□ 0.57
NFKB1-205ENST00000505458 BAZ1BQ9UIG0 1483 aaKnown RBP18.55■□□□□ 0.56
NFKB1-205ENST00000505458 HMGXB3Q12766 1538 aa18.51■□□□□ 0.55
NFKB1-205ENST00000505458 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
NFKB1-205ENST00000505458 EEA1Q15075 1411 aa18.33■□□□□ 0.53
NFKB1-205ENST00000505458 ABCC8Q09428 1581 aa18.27■□□□□ 0.52
NFKB1-205ENST00000505458 WRNQ14191 1432 aaPredicted RBP eCLIP18.25■□□□□ 0.51
NFKB1-205ENST00000505458 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
NFKB1-205ENST00000505458 PRDM2Q13029 1718 aa18.16■□□□□ 0.5
NFKB1-205ENST00000505458 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
NFKB1-205ENST00000505458 TOP2BQ02880 1626 aa18.1■□□□□ 0.49
NFKB1-205ENST00000505458 FAM9AQ8IZU1 332 aaPredicted RBP18.1■□□□□ 0.49
NFKB1-205ENST00000505458 CFTRP13569 1480 aa18.1■□□□□ 0.49
NFKB1-205ENST00000505458 SYNJ1O43426 1573 aa18.1■□□□□ 0.49
NFKB1-205ENST00000505458 CC2D2AQ9P2K1 1620 aa18.08■□□□□ 0.49
NFKB1-205ENST00000505458 KIF21BO75037 1637 aa18■□□□□ 0.47
NFKB1-205ENST00000505458 GOLGA3Q08378 1498 aa17.99■□□□□ 0.47
NFKB1-205ENST00000505458 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
NFKB1-205ENST00000505458 SOGA1O94964 1423 aa17.99■□□□□ 0.47
NFKB1-205ENST00000505458 TNIKQ9UKE5 1360 aa17.98■□□□□ 0.47
NFKB1-205ENST00000505458 CEP164Q9UPV0 1460 aa17.97■□□□□ 0.47
NFKB1-205ENST00000505458 CADPSQ9ULU8 1353 aa17.95■□□□□ 0.46
NFKB1-205ENST00000505458 TRIM26Q12899 539 aaPredicted RBP17.93■□□□□ 0.46
NFKB1-205ENST00000505458 CUX1P39880 1505 aa17.88■□□□□ 0.45
NFKB1-205ENST00000505458 RUSC2Q8N2Y8 1516 aa17.85■□□□□ 0.45
NFKB1-205ENST00000505458 CEP162Q5TB80 1403 aa17.85■□□□□ 0.45
NFKB1-205ENST00000505458 PCGF6Q9BYE7 350 aa17.84■□□□□ 0.45
NFKB1-205ENST00000505458 ERICH3Q5RHP9 1530 aa17.84■□□□□ 0.45
NFKB1-205ENST00000505458 LAMC3Q9Y6N6 1575 aa17.81■□□□□ 0.44
NFKB1-205ENST00000505458 KIF27Q86VH2 1401 aa17.8■□□□□ 0.44
NFKB1-205ENST00000505458 UBTFP17480 764 aaKnown RBP17.75■□□□□ 0.43
NFKB1-205ENST00000505458 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
NFKB1-205ENST00000505458 HRCP23327 699 aa17.73■□□□□ 0.43
NFKB1-205ENST00000505458 PRXQ9BXM0 1461 aa17.73■□□□□ 0.43
NFKB1-205ENST00000505458 DNMBPQ6XZF7 1577 aa17.72■□□□□ 0.43
NFKB1-205ENST00000505458 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
NFKB1-205ENST00000505458 RAPGEF2Q9Y4G8 1499 aa17.66■□□□□ 0.42
NFKB1-205ENST00000505458 CLIP1P30622 1438 aa17.65■□□□□ 0.42
NFKB1-205ENST00000505458 FGD5Q6ZNL6 1462 aa17.65■□□□□ 0.42
NFKB1-205ENST00000505458 PDS5BQ9NTI5 1447 aa17.63■□□□□ 0.41
NFKB1-205ENST00000505458 CUX2O14529 1486 aa17.6■□□□□ 0.41
NFKB1-205ENST00000505458 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
NFKB1-205ENST00000505458 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.41
NFKB1-205ENST00000505458 ABCA10Q8WWZ4 1543 aa17.57■□□□□ 0.4
NFKB1-205ENST00000505458 ZEB1P37275 1124 aaPredicted RBP17.56■□□□□ 0.4
NFKB1-205ENST00000505458 NESP48681 1621 aa17.52■□□□□ 0.4
NFKB1-205ENST00000505458 CUL7Q14999 1698 aa17.52■□□□□ 0.4
NFKB1-205ENST00000505458 POLA1P09884 1462 aaPredicted RBP17.51■□□□□ 0.39
NFKB1-205ENST00000505458 IGF1RP08069 1367 aa17.49■□□□□ 0.39
NFKB1-205ENST00000505458 WDR97A6NE52 1622 aa17.49■□□□□ 0.39
NFKB1-205ENST00000505458 CARMIL1Q5VZK9 1371 aa17.46■□□□□ 0.39
NFKB1-205ENST00000505458 URB2Q14146 1524 aaKnown RBP17.45■□□□□ 0.38
NFKB1-205ENST00000505458 APLP2Q06481 763 aa17.44■□□□□ 0.38
NFKB1-205ENST00000505458 KIF21AQ7Z4S6 1674 aa17.44■□□□□ 0.38
NFKB1-205ENST00000505458 ABCA5Q8WWZ7 1642 aa17.4■□□□□ 0.38
NFKB1-205ENST00000505458 ARAP1Q96P48 1450 aa17.39■□□□□ 0.38
NFKB1-205ENST00000505458 MRC2Q9UBG0 1479 aa17.36■□□□□ 0.37
NFKB1-205ENST00000505458 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
NFKB1-205ENST00000505458 EFCAB5A4FU69 1503 aa17.35■□□□□ 0.37
NFKB1-205ENST00000505458 ARHGAP35Q9NRY4 1499 aa17.33■□□□□ 0.37
NFKB1-205ENST00000505458 CTTNBP2Q8WZ74 1663 aa17.33■□□□□ 0.37
NFKB1-205ENST00000505458 MAP3K1Q13233 1512 aa17.33■□□□□ 0.36
NFKB1-205ENST00000505458 TARBP1Q13395 1621 aaKnown RBP17.31■□□□□ 0.36
NFKB1-205ENST00000505458 GAPVD1Q14C86 1478 aa17.3■□□□□ 0.36
NFKB1-205ENST00000505458 FHAD1B1AJZ9 1412 aa17.29■□□□□ 0.36
NFKB1-205ENST00000505458 WDR62O43379 1518 aa17.27■□□□□ 0.35
NFKB1-205ENST00000505458 PPARGC1BQ86YN6 1023 aaKnown RBP17.26■□□□□ 0.35
NFKB1-205ENST00000505458 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
NFKB1-205ENST00000505458 PBRM1Q86U86 1689 aa17.22■□□□□ 0.35
NFKB1-205ENST00000505458 AQRO60306 1485 aaKnown RBP eCLIP17.21■□□□□ 0.35
NFKB1-205ENST00000505458 DNAJC5BQ9UF47 199 aa17.18■□□□□ 0.34
NFKB1-205ENST00000505458 TIAM1Q13009 1591 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms