RNA–Protein interactions for RNA: ENST00000498271.1

C4A-259, Transcript of complement C4A (Rodgers blood group), humanhuman

TSL 1 (best) BASIC

Gene C4A, Length 5,269 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4A-259ENST00000498271 NISCHQ9Y2I1 1504 aa26.23■■□□□ 1.79
C4A-259ENST00000498271 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
C4A-259ENST00000498271 SUPT5HO00267 1087 aaKnown RBP24.74■■□□□ 1.55
C4A-259ENST00000498271 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
C4A-259ENST00000498271 PELP1Q8IZL8 1130 aaKnown RBP24.21■■□□□ 1.47
C4A-259ENST00000498271 MYT1Q01538 1121 aa23.79■■□□□ 1.4
C4A-259ENST00000498271 EHMT2Q96KQ7 1210 aa23.54■■□□□ 1.36
C4A-259ENST00000498271 FAM9AQ8IZU1 332 aaPredicted RBP23.46■■□□□ 1.35
C4A-259ENST00000498271 CENPBP07199 599 aaPredicted RBP23.35■■□□□ 1.33
C4A-259ENST00000498271 ZEB1P37275 1124 aaPredicted RBP23.33■■□□□ 1.33
C4A-259ENST00000498271 PCGF6Q9BYE7 350 aa23.19■■□□□ 1.3
C4A-259ENST00000498271 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
C4A-259ENST00000498271 ERICH6Q7L0X2 663 aa23.01■■□□□ 1.27
C4A-259ENST00000498271 TRIM41Q8WV44 630 aa22.96■■□□□ 1.27
C4A-259ENST00000498271 APLP2Q06481 763 aa22.94■■□□□ 1.26
C4A-259ENST00000498271 TTBK1Q5TCY1 1321 aaPredicted RBP22.77■■□□□ 1.24
C4A-259ENST00000498271 HRCP23327 699 aa22.59■■□□□ 1.21
C4A-259ENST00000498271 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
C4A-259ENST00000498271 NEFLP07196 543 aa22.52■■□□□ 1.2
C4A-259ENST00000498271 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
C4A-259ENST00000498271 UBTFP17480 764 aaKnown RBP22.44■■□□□ 1.18
C4A-259ENST00000498271 TRIM26Q12899 539 aaPredicted RBP22.36■■□□□ 1.17
C4A-259ENST00000498271 LOC105371045A0A1W2PR82 267 aa22.34■■□□□ 1.17
C4A-259ENST00000498271 YTHDC1Q96MU7 727 aaKnown RBP22.27■■□□□ 1.16
C4A-259ENST00000498271 PPARGC1BQ86YN6 1023 aaKnown RBP22.26■■□□□ 1.15
C4A-259ENST00000498271 ATP1B4Q9UN42 357 aaPredicted RBP22.11■■□□□ 1.13
C4A-259ENST00000498271 ABCC9O60706 1549 aa21.98■■□□□ 1.11
C4A-259ENST00000498271 ZCCHC6Q5VYS8 1495 aaKnown RBP21.86■■□□□ 1.09
C4A-259ENST00000498271 DAXXQ9UER7 740 aaPredicted RBP21.79■■□□□ 1.08
C4A-259ENST00000498271 DIEXFQ68CQ4 756 aaKnown RBP21.69■■□□□ 1.06
C4A-259ENST00000498271 HNRNPUL2Q1KMD3 747 aaKnown RBP21.69■■□□□ 1.06
C4A-259ENST00000498271 PABPN1Q86U42 306 aaKnown RBP eCLIP21.68■■□□□ 1.06
C4A-259ENST00000498271 RTL5Q5HYW3 569 aaPredicted RBP21.65■■□□□ 1.06
C4A-259ENST00000498271 ITGAEP38570 1179 aa21.63■■□□□ 1.05
C4A-259ENST00000498271 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
C4A-259ENST00000498271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.63■■□□□ 1.05
C4A-259ENST00000498271 MYT1LQ9UL68 1186 aa21.53■■□□□ 1.04
C4A-259ENST00000498271 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
C4A-259ENST00000498271 SCRIBQ14160 1630 aa21.48■■□□□ 1.03
C4A-259ENST00000498271 ACIN1Q9UKV3 1341 aaKnown RBP21.37■■□□□ 1.01
C4A-259ENST00000498271 ZNF316A6NFI3 1004 aaPredicted RBP21.3■■□□□ 1
C4A-259ENST00000498271 CLSPNQ9HAW4 1339 aa21.28■■□□□ 1
C4A-259ENST00000498271 DCAF1Q9Y4B6 1507 aa21.25■□□□□ 0.99
C4A-259ENST00000498271 CSRNP3Q8WYN3 585 aa21.25■□□□□ 0.99
C4A-259ENST00000498271 CDK11AQ9UQ88 783 aaPredicted RBP21.22■□□□□ 0.99
C4A-259ENST00000498271 FAM50AQ14320 339 aaKnown RBP21.18■□□□□ 0.98
C4A-259ENST00000498271 MYO15BQ96JP2 1530 aa21.11■□□□□ 0.97
C4A-259ENST00000498271 POLR3GLQ9BT43 218 aa21.08■□□□□ 0.97
C4A-259ENST00000498271 BCANQ96GW7 911 aa21.03■□□□□ 0.96
C4A-259ENST00000498271 RSF1Q96T23 1441 aaPredicted RBP21.01■□□□□ 0.95
C4A-259ENST00000498271 ANP32CO43423 234 aa20.99■□□□□ 0.95
C4A-259ENST00000498271 NEUROD1Q13562 356 aa20.98■□□□□ 0.95
C4A-259ENST00000498271 CNGB1Q14028 1251 aaPredicted RBP20.92■□□□□ 0.94
C4A-259ENST00000498271 TRIM52Q96A61 297 aa20.91■□□□□ 0.94
C4A-259ENST00000498271 ANP32AP39687 249 aaKnown RBP20.89■□□□□ 0.93
C4A-259ENST00000498271 P3H3Q8IVL6 736 aa20.86■□□□□ 0.93
C4A-259ENST00000498271 RB1CC1Q8TDY2 1594 aa20.84■□□□□ 0.93
C4A-259ENST00000498271 NACADO15069 1562 aa20.8■□□□□ 0.92
C4A-259ENST00000498271 GLIPR1L2Q4G1C9 344 aa20.78■□□□□ 0.92
C4A-259ENST00000498271 FBLN2P98095 1184 aa20.77■□□□□ 0.91
C4A-259ENST00000498271 NPM1P06748 294 aaKnown RBP eCLIP20.72■□□□□ 0.911e-9■■■■■ 69
C4A-259ENST00000498271 SCAF1Q9H7N4 1312 aaKnown RBP20.72■□□□□ 0.91
C4A-259ENST00000498271 ESF1Q9H501 851 aaKnown RBP20.64■□□□□ 0.89
C4A-259ENST00000498271 EIF5BO60841 1220 aaKnown RBP20.64■□□□□ 0.89
C4A-259ENST00000498271 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
C4A-259ENST00000498271 FKBP8Q14318 412 aa20.62■□□□□ 0.89
C4A-259ENST00000498271 EEA1Q15075 1411 aa20.61■□□□□ 0.89
C4A-259ENST00000498271 CLIP1P30622 1438 aa20.61■□□□□ 0.89
C4A-259ENST00000498271 ZNF326Q5BKZ1 582 aaKnown RBP20.6■□□□□ 0.89
C4A-259ENST00000498271 CEP162Q5TB80 1403 aa20.59■□□□□ 0.89
C4A-259ENST00000498271 CECR2Q9BXF3 1484 aa20.57■□□□□ 0.88
C4A-259ENST00000498271 GOLGA3Q08378 1498 aa20.56■□□□□ 0.88
C4A-259ENST00000498271 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.889e-14■■■■■ 43.9
C4A-259ENST00000498271 BAZ1AQ9NRL2 1556 aaPredicted RBP20.53■□□□□ 0.88
C4A-259ENST00000498271 SLC4A1APQ9BWU0 796 aaKnown RBP20.48■□□□□ 0.87
C4A-259ENST00000498271 ANP32BQ92688 251 aaKnown RBP20.48■□□□□ 0.87
C4A-259ENST00000498271 ZBTB47Q9UFB7 747 aaPredicted RBP20.47■□□□□ 0.87
C4A-259ENST00000498271 TNIKQ9UKE5 1360 aa20.46■□□□□ 0.87
C4A-259ENST00000498271 ANP32EQ9BTT0 268 aa20.45■□□□□ 0.86
C4A-259ENST00000498271 BAZ1BQ9UIG0 1483 aaKnown RBP20.45■□□□□ 0.86
C4A-259ENST00000498271 TONSLQ96HA7 1378 aa20.43■□□□□ 0.86
C4A-259ENST00000498271 NPM2Q86SE8 214 aaKnown RBP20.42■□□□□ 0.86
C4A-259ENST00000498271 ZNF777Q9ULD5 760 aaPredicted RBP20.42■□□□□ 0.86
C4A-259ENST00000498271 CANXP27824 592 aaKnown RBP20.38■□□□□ 0.85
C4A-259ENST00000498271 CEP164Q9UPV0 1460 aa20.38■□□□□ 0.85
C4A-259ENST00000498271 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
C4A-259ENST00000498271 DDX10Q13206 875 aaKnown RBP20.34■□□□□ 0.85
C4A-259ENST00000498271 HNRNPUQ00839 825 aaKnown RBP eCLIP20.31■□□□□ 0.84
C4A-259ENST00000498271 MIER1Q8N108 512 aa20.3■□□□□ 0.84
C4A-259ENST00000498271 UPF2Q9HAU5 1272 aaKnown RBP20.3■□□□□ 0.84
C4A-259ENST00000498271 MTUS2Q5JR59 1369 aa20.29■□□□□ 0.84
C4A-259ENST00000498271 CHIC2Q9UKJ5 165 aa20.28■□□□□ 0.84
C4A-259ENST00000498271 NBR1Q14596 966 aa20.28■□□□□ 0.84
C4A-259ENST00000498271 KIF27Q86VH2 1401 aa20.27■□□□□ 0.84
C4A-259ENST00000498271 SOGA1O94964 1423 aa20.27■□□□□ 0.83
C4A-259ENST00000498271 CCDC136Q96JN2 1154 aa20.24■□□□□ 0.83
C4A-259ENST00000498271 CCDC88BA6NC98 1476 aa20.21■□□□□ 0.83
C4A-259ENST00000498271 ABCC8Q09428 1581 aa20.17■□□□□ 0.82
C4A-259ENST00000498271 DDRGK1Q96HY6 314 aa20.14■□□□□ 0.81
C4A-259ENST00000498271 HSP90AA1P07900 732 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms