RNA–Protein interactions for RNA: ENST00000498271.1

C4A-259, Transcript of complement C4A (Rodgers blood group), humanhuman

TSL 1 (best) BASIC

Gene C4A, Length 5,269 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4A-259ENST00000498271 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.25■□□□□ 0.197e-15■■■■■ 58.6
C4A-259ENST00000498271 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.58□□□□□ -0.565e-14■□□□□ 10.1
C4A-259ENST00000498271 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.889e-14■■■■■ 43.9
C4A-259ENST00000498271 PABPC4Q13310 644 aaKnown RBP eCLIP16.44■□□□□ 0.222e-12■■■■■ 82.5
C4A-259ENST00000498271 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.27■□□□□ 0.193e-11■■■■■ 53.8
C4A-259ENST00000498271 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.4■□□□□ 0.224e-11■■■■■ 90.6
C4A-259ENST00000498271 RBM22Q9NW64 420 aaKnown RBP eCLIP15.15■□□□□ 0.023e-10■■■■■ 41.9
C4A-259ENST00000498271 SND1Q7KZF4 910 aaKnown RBP eCLIP16.78■□□□□ 0.284e-10■■■■□ 21.5
C4A-259ENST00000498271 GPKOWQ92917 476 aaPredicted RBP eCLIP16.4■□□□□ 0.224e-10■■■■■ 31.5
C4A-259ENST00000498271 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.13■□□□□ 0.337e-10■■■□□ 15.6
C4A-259ENST00000498271 NPM1P06748 294 aaKnown RBP eCLIP20.72■□□□□ 0.911e-9■■■■■ 69
C4A-259ENST00000498271 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.27□□□□□ -0.121e-9■■■■■ 62.2
C4A-259ENST00000498271 LARP4Q71RC2 724 aaKnown RBP eCLIP14.3□□□□□ -0.125e-9■■■■□ 26.5
C4A-259ENST00000498271 NSUN2Q08J23 767 aaKnown RBP eCLIP15.67■□□□□ 0.19e-9■■■■■ 35.6
C4A-259ENST00000498271 NIP7Q9Y221 180 aaKnown RBP eCLIP16.89■□□□□ 0.291e-8■■□□□ 12
C4A-259ENST00000498271 RPS3P23396 243 aaKnown RBP eCLIP14.7□□□□□ -0.062e-8■■■□□ 19.1
C4A-259ENST00000498271 PPIGQ13427 754 aaKnown RBP eCLIP14.97□□□□□ -0.012e-8■■□□□ 14.2
C4A-259ENST00000498271 PCBP1Q15365 356 aaKnown RBP eCLIP14.99□□□□□ -0.013e-8■■□□□ 14.4
C4A-259ENST00000498271 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.12■□□□□ 0.172e-7■□□□□ 10.3
C4A-259ENST00000498271 NOLC1Q14978 699 aaKnown RBP eCLIP17.51■□□□□ 0.392e-7■■□□□ 13.7
C4A-259ENST00000498271 TROVE2P10155 538 aaKnown RBP eCLIP16.63■□□□□ 0.255e-7■■□□□ 12.9
C4A-259ENST00000498271 AQRO60306 1485 aaKnown RBP eCLIP18.89■□□□□ 0.618e-7■■■■■ 26.8
C4A-259ENST00000498271 DDX3XO00571 662 aaKnown RBP eCLIP15.42■□□□□ 0.061e-6■■■■■ 48.4
C4A-259ENST00000498271 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.71■□□□□ 0.111e-6■■■■□ 26
C4A-259ENST00000498271 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.28□□□□□ -0.122e-6■□□□□ 8.3
C4A-259ENST00000498271 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.85■□□□□ 0.292e-6■■■■□ 22
C4A-259ENST00000498271 RPS11P62280 158 aaKnown RBP eCLIP13.11□□□□□ -0.313e-6■■■■■ 46.6
C4A-259ENST00000498271 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.17□□□□□ -0.141e-5■■■■□ 21.4
C4A-259ENST00000498271 SMNDC1O75940 238 aaKnown RBP eCLIP15.41■□□□□ 0.061e-5■■□□□ 11.9
Retrieved 29 of 29 RNA–protein pairs in 8.3 ms