RNA–Protein interactions for RNA: ENST00000497658.5

PHC3-217, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best) BASIC

Gene PHC3, Length 2,087 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-217ENST00000497658 AEBP2Q6ZN18 517 aaPredicted RBP18.49■□□□□ 0.55
PHC3-217ENST00000497658 CHIC1Q5VXU3 224 aa17.27■□□□□ 0.36
PHC3-217ENST00000497658 SENP3Q9H4L4 574 aaPredicted RBP15.83■□□□□ 0.12
PHC3-217ENST00000497658 PHF23Q9BUL5 403 aaPredicted RBP15.57■□□□□ 0.08
PHC3-217ENST00000497658 FOXD1Q16676 465 aa14.8□□□□□ -0.04
PHC3-217ENST00000497658 POTEDQ86YR6 584 aa14.28□□□□□ -0.12
PHC3-217ENST00000497658 MSH5O43196 834 aa13.99□□□□□ -0.17
PHC3-217ENST00000497658 PIAS4Q8N2W9 510 aaPredicted RBP13.72□□□□□ -0.21
PHC3-217ENST00000497658 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
PHC3-217ENST00000497658 PPP6R1Q9UPN7 881 aa13.55□□□□□ -0.24
PHC3-217ENST00000497658 ADRA2BP18089 450 aa13.48□□□□□ -0.25
PHC3-217ENST00000497658 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
PHC3-217ENST00000497658 MAPK8IP2Q13387 824 aaPredicted RBP12.49□□□□□ -0.41
PHC3-217ENST00000497658 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
PHC3-217ENST00000497658 CACNB1Q02641 598 aaPredicted RBP12.22□□□□□ -0.45
PHC3-217ENST00000497658 DCAF8L1A6NGE4 600 aa11.96□□□□□ -0.49
PHC3-217ENST00000497658 HOXD11P31277 338 aaPredicted RBP11.9□□□□□ -0.5
PHC3-217ENST00000497658 RNF39Q9H2S5 420 aa11.9□□□□□ -0.5
PHC3-217ENST00000497658 PPP4R3CPQ6ZMV5 832 aa11.85□□□□□ -0.51
PHC3-217ENST00000497658 CNKSR2Q8WXI2 1034 aa11.72□□□□□ -0.53
PHC3-217ENST00000497658 C1QBPQ07021 282 aaKnown RBP11.71□□□□□ -0.53
PHC3-217ENST00000497658 RNF216Q9NWF9 866 aaPredicted RBP11.71□□□□□ -0.54
PHC3-217ENST00000497658 DNAJC5BQ9UF47 199 aa11.59□□□□□ -0.55
PHC3-217ENST00000497658 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.31□□□□□ -0.64e-8■■□□□ 12.6
PHC3-217ENST00000497658 NCBP3Q53F19 620 aaKnown RBP11.28□□□□□ -0.6
PHC3-217ENST00000497658 NPM3O75607 178 aaKnown RBP11.12□□□□□ -0.63
PHC3-217ENST00000497658 POTEHQ6S545 545 aa11.11□□□□□ -0.63
PHC3-217ENST00000497658 U3KPZ7 1027 aaPredicted RBP11.05□□□□□ -0.64
PHC3-217ENST00000497658 DSG3P32926 999 aa11.02□□□□□ -0.64
PHC3-217ENST00000497658 SPINK5Q9NQ38 1064 aaPredicted RBP10.99□□□□□ -0.65
PHC3-217ENST00000497658 NISCHQ9Y2I1 1504 aa10.98□□□□□ -0.65
PHC3-217ENST00000497658 CAPN15O75808 1086 aa10.97□□□□□ -0.65
PHC3-217ENST00000497658 SLC4A2P04920 1241 aa10.72□□□□□ -0.69
PHC3-217ENST00000497658 TRHP20396 242 aaPredicted RBP10.71□□□□□ -0.69
PHC3-217ENST00000497658 APLP2Q06481 763 aa10.7□□□□□ -0.7
PHC3-217ENST00000497658 ABCB7O75027 752 aa10.69□□□□□ -0.7
PHC3-217ENST00000497658 ZNF219Q9P2Y4 722 aaPredicted RBP10.69□□□□□ -0.7
PHC3-217ENST00000497658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.6□□□□□ -0.71
PHC3-217ENST00000497658 HNRNPUL2Q1KMD3 747 aaKnown RBP10.6□□□□□ -0.71
PHC3-217ENST00000497658 KCNA4P22459 653 aa10.57□□□□□ -0.72
PHC3-217ENST00000497658 SAMD1Q6SPF0 538 aaPredicted RBP10.52□□□□□ -0.73
PHC3-217ENST00000497658 RBM42Q9BTD8 480 aaKnown RBP10.52□□□□□ -0.73
PHC3-217ENST00000497658 CHRDL2Q6WN34 429 aa10.43□□□□□ -0.74
PHC3-217ENST00000497658 POLA2Q14181 598 aa10.35□□□□□ -0.75
PHC3-217ENST00000497658 MYCNP04198 464 aaPredicted RBP10.29□□□□□ -0.76
PHC3-217ENST00000497658 SP7Q8TDD2 431 aaPredicted RBP10.25□□□□□ -0.77
PHC3-217ENST00000497658 AKT1S1Q96B36 256 aa10.21□□□□□ -0.77
PHC3-217ENST00000497658 ZBTB12Q9Y330 459 aaPredicted RBP10.12□□□□□ -0.79
PHC3-217ENST00000497658 PIP4P2Q8N4L2 257 aa10.11□□□□□ -0.79
PHC3-217ENST00000497658 REM2Q8IYK8 340 aaPredicted RBP10.11□□□□□ -0.79
PHC3-217ENST00000497658 ATF5Q9Y2D1 282 aaPredicted RBP10.08□□□□□ -0.8
PHC3-217ENST00000497658 OSCARQ8IYS5 282 aa10.03□□□□□ -0.8
PHC3-217ENST00000497658 HAX1O00165 279 aa10.01□□□□□ -0.81
PHC3-217ENST00000497658 FXR2P51116 673 aaKnown RBP eCLIP10.01□□□□□ -0.81
PHC3-217ENST00000497658 PITPNM1O00562 1244 aa10□□□□□ -0.81
PHC3-217ENST00000497658 FOXD4L1Q9NU39 408 aa9.98□□□□□ -0.81
PHC3-217ENST00000497658 SLC4A1APQ9BWU0 796 aaKnown RBP9.9□□□□□ -0.82
PHC3-217ENST00000497658 EVX2Q03828 476 aa9.88□□□□□ -0.83
PHC3-217ENST00000497658 SPDYE2BA6NHP3 402 aa9.78□□□□□ -0.84
PHC3-217ENST00000497658 SPDYE6P0CI01 402 aa9.78□□□□□ -0.84
PHC3-217ENST00000497658 SPDYE2Q495Y8 402 aa9.78□□□□□ -0.84
PHC3-217ENST00000497658 ATXN8OSP0DMR3 200 aa9.73□□□□□ -0.85
PHC3-217ENST00000497658 PRKAR2AP13861 404 aaKnown RBP9.73□□□□□ -0.85
PHC3-217ENST00000497658 ZBTB22O15209 634 aa9.71□□□□□ -0.85
PHC3-217ENST00000497658 FBLN2P98095 1184 aa9.71□□□□□ -0.86
PHC3-217ENST00000497658 C19orf67A6NJJ6 358 aa9.7□□□□□ -0.86
PHC3-217ENST00000497658 SPDYE1Q8NFV5 336 aaPredicted RBP9.7□□□□□ -0.86
PHC3-217ENST00000497658 CLEC11AQ9Y240 323 aa9.68□□□□□ -0.86
PHC3-217ENST00000497658 GABBR2O75899 941 aa9.64□□□□□ -0.87
PHC3-217ENST00000497658 SSUH2Q9Y2M2 353 aa9.62□□□□□ -0.87
PHC3-217ENST00000497658 LHX8Q68G74 356 aa9.61□□□□□ -0.87
PHC3-217ENST00000497658 MKRN4PQ13434 485 aaPredicted RBP9.6□□□□□ -0.87
PHC3-217ENST00000497658 ZNF692Q9BU19 519 aaPredicted RBP9.59□□□□□ -0.87
PHC3-217ENST00000497658 CHADLQ6NUI6 762 aa9.54□□□□□ -0.88
PHC3-217ENST00000497658 PRR29P0C7W0 189 aa9.47□□□□□ -0.89
PHC3-217ENST00000497658 HRCP23327 699 aa9.45□□□□□ -0.9
PHC3-217ENST00000497658 POTEIP0CG38 1075 aa9.44□□□□□ -0.9
PHC3-217ENST00000497658 PABPN1Q86U42 306 aaKnown RBP eCLIP9.44□□□□□ -0.9
PHC3-217ENST00000497658 CD44P16070 742 aaKnown RBP9.4□□□□□ -0.9
PHC3-217ENST00000497658 SHROOM4Q9ULL8 1493 aa9.4□□□□□ -0.9
PHC3-217ENST00000497658 CLCN6P51797 869 aa9.38□□□□□ -0.91
PHC3-217ENST00000497658 SUPT5HO00267 1087 aaKnown RBP9.38□□□□□ -0.91
PHC3-217ENST00000497658 FARP1Q9Y4F1 1045 aaPredicted RBP9.37□□□□□ -0.91
PHC3-217ENST00000497658 ZCCHC6Q5VYS8 1495 aaKnown RBP9.34□□□□□ -0.91
PHC3-217ENST00000497658 DCBLD2Q96PD2 775 aa9.28□□□□□ -0.92
PHC3-217ENST00000497658 PLSCR2Q9NRY7 297 aa9.27□□□□□ -0.93
PHC3-217ENST00000497658 ZNF579Q8NAF0 562 aaKnown RBP9.25□□□□□ -0.93
PHC3-217ENST00000497658 CCDC180Q9P1Z9 1646 aa9.25□□□□□ -0.93
PHC3-217ENST00000497658 MYO15BQ96JP2 1530 aa9.25□□□□□ -0.93
PHC3-217ENST00000497658 PCGF6Q9BYE7 350 aa9.22□□□□□ -0.93
PHC3-217ENST00000497658 DCAF1Q9Y4B6 1507 aa9.21□□□□□ -0.93
PHC3-217ENST00000497658 ZRANB1Q9UGI0 708 aa9.21□□□□□ -0.93
PHC3-217ENST00000497658 CREBZFQ9NS37 354 aa9.17□□□□□ -0.94
PHC3-217ENST00000497658 GALR2O43603 387 aaPredicted RBP9.16□□□□□ -0.94
PHC3-217ENST00000497658 OTUD5Q96G74 571 aa9.16□□□□□ -0.94
PHC3-217ENST00000497658 POTEB2H3BUK9 544 aa9.12□□□□□ -0.95
PHC3-217ENST00000497658 PELP1Q8IZL8 1130 aaKnown RBP9.12□□□□□ -0.95
PHC3-217ENST00000497658 STAG3Q9UJ98 1225 aa9.12□□□□□ -0.95
PHC3-217ENST00000497658 PPARGC1BQ86YN6 1023 aaKnown RBP9.08□□□□□ -0.96
PHC3-217ENST00000497658 TRIM26Q12899 539 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms